-
1
-
-
34548420113
-
Rapid retrieval of protein structures from databases
-
Aung,Z. and Tan,K.-L. (2007) Rapid retrieval of protein structures from databases. Drug Discov. Today, 12, 732-739.
-
(2007)
Drug Discov. Today
, vol.12
, pp. 732-739
-
-
Aung, Z.1
Tan, K.-L.2
-
2
-
-
0141607824
-
Latent dirichlet allocation
-
Blei,D.M. et al. (2003) Latent dirichlet allocation. J. Mach. Learn. Res., 3, 993-1022.
-
(2003)
J. Mach. Learn. Res.
, vol.3
, pp. 993-1022
-
-
Blei, D.M.1
-
3
-
-
77649240530
-
FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately
-
Budowski-Tal,I. et al. (2010) FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and ccurately. Proc. Natl Acad. Sci. USA, 107, 3481-3486.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 3481-3486
-
-
Budowski-Tal, I.1
-
4
-
-
1642389927
-
Local feature frequency profile: a method to measure structural similarity in proteins
-
Choi,I.-G. et al. (2004) Local feature frequency profile: a method to measure structural similarity in proteins. Proc. Natl Acad. Sci. USA, 101, 3797-802.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 3797-3802
-
-
Choi, I.-G.1
-
5
-
-
33846653633
-
Using an alignment of fragment strings for comparing protein structures
-
Friedberg,I. et al. (2007) Using an alignment of fragment strings for comparing protein structures. Bioinformatics, 23, e219-e224.
-
(2007)
Bioinformatics
, vol.23
-
-
Friedberg, I.1
-
6
-
-
0021518209
-
Stochastic relaxation Gibbs distributions and the Bayesian restoration of images
-
Geman,S. and Geman,D. (1984) Stochastic relaxation, Gibbs distributions and the Bayesian restoration of images. IEEE Trans. Pattern Anal. Mach. Intell., 6, 721-741.
-
(1984)
IEEE Trans. Pattern Anal. Mach. Intell.
, vol.6
, pp. 721-741
-
-
Geman, S.1
Geman, D.2
-
8
-
-
0029785147
-
Mapping the protein universe
-
Holm,L. and Sander,C. (1996) Mapping the protein universe. Science, 273, 595-603.
-
(1996)
Science
, vol.273
, pp. 595-603
-
-
Holm, L.1
Sander, C.2
-
9
-
-
0024420202
-
Comparing short protein substructures by a method based on backbone torsion angles
-
Karpen,M.E. et al. (1989) Comparing short protein substructures by a method based on backbone torsion angles. Proteins, 6, 155-167.
-
(1989)
Proteins
, vol.6
, pp. 155-167
-
-
Karpen, M.E.1
-
10
-
-
0030501419
-
Use of non-crystallographic symmetry in protein structure refinement
-
Kleywegt,G.J. (1996) Use of non-crystallographic symmetry in protein structure refinement. Acta Crystallogr., Sect. D: Biol. Crystallogr., 52, 842-857.
-
(1996)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.52
, pp. 842-857
-
-
Kleywegt, G.J.1
-
11
-
-
13444279981
-
Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures
-
Kolodny,R. et al. (2005) Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. J. Mol. Biol., 346, 1173-188.
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 1173-1188
-
-
Kolodny, R.1
-
12
-
-
41149134509
-
Sequence-similar, structure-dissimilar protein pairs in the PDB
-
Kosloff,M. and Kolodny,R. (2008) Sequence-similar, structure-dissimilar protein pairs in the PDB. Proteins, 71, 891-902.
-
(2008)
Proteins
, vol.71
, pp. 891-902
-
-
Kosloff, M.1
Kolodny, R.2
-
14
-
-
0019512326
-
Relation between hen egg white lysozyme and bacteriophage T4 lysozyme: evolutionary implications
-
Matthews,B.W. et al. (1981) Relation between hen egg white lysozyme and bacteriophage T4 lysozyme: evolutionary implications. J. Mol. Biol., 147, 45-558.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 545-558
-
-
Matthews, B.W.1
-
15
-
-
3843073537
-
The potential to improve retrieval effectiveness with multiple viewpoints
-
Charlottesville, VA, USA
-
Powell,A.L. and French,J.C. (1998) The potential to improve retrieval effectiveness with multiple viewpoints. Technical report CS-98-15, harlottesville, VA, USA.
-
(1998)
Technical report CS-98-15
-
-
Powell, A.L.1
French, J.C.2
-
16
-
-
0037422619
-
Automatic classification of protein structure by usingGauss integrals
-
Rogen,P. and Fain,B. (2003) Automatic classification of protein structure by usingGauss integrals. Proc. Natl Acad. Sci. USA, 100, 119-124.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 119-124
-
-
Rogen, P.1
Fain, B.2
-
17
-
-
0025317502
-
Definition of general topological equivalence in protein structures Aprocedure involving comparison of properties and relationships through simulated annealing and dynamic programming
-
Sali,A. and Blundell,T.L. (1990) Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming. J. Mol. Biol., 212, 403-428.
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 403-428
-
-
Sali, A.1
Blundell, T.L.2
-
18
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov,I.N. and Bourne,P.E. (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng., 11, 39-747.
-
(1998)
Protein Eng.
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
19
-
-
0024349252
-
Protein structure alignment
-
Taylor,W.R. and Orengo,C.A. (1989) Protein structure alignment. J. Mol. Biol., 208, 1-22.
-
(1989)
J. Mol. Biol.
, vol.208
, pp. 1-22
-
-
Taylor, W.R.1
Orengo, C.A.2
-
20
-
-
0035029073
-
Protein structure: geometry, topology and classification
-
Taylor,W.R. et al. (2001) Protein structure: geometry, topology and classification. Rep. Prog. Phys., 64, 517-590.
-
(2001)
Rep. Prog. Phys.
, vol.64
, pp. 517-590
-
-
Taylor, W.R.1
-
21
-
-
34250167965
-
Kappa-alpha plot derived structural alphabet and BLOSUMlike substitution matrix for rapid search of protein structure database
-
Tung,C.-H. et al. (2007) Kappa-alpha plot derived structural alphabet and BLOSUMlike substitution matrix for rapid search of protein structure atabase. Genome Biol., 8, R31-R31.
-
(2007)
Genome Biol.
, vol.8
-
-
Tung, C.-H.1
-
22
-
-
33747079562
-
Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification
-
Zotenko,E. et al. (2006) Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification. MC Struct. Biol., 6, 12-12.
-
(2006)
BMC Struct. Biol.
, vol.6
, pp. 12-112
-
-
Zotenko, E.1
-
23
-
-
0024557588
-
The alignment of protein structures in threedimensions
-
Zuker,M. and Somorjai,R.L. (1989) The alignment of protein structures in threedimensions. Bull. Math. Biol., 51, 55-78.
-
(1989)
Bull. Math. Biol.
, vol.51
, pp. 55-78
-
-
Zuker, M.1
Somorjai, R.L.2
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