Sim4db and Leaff: Utilities for fast batch spliced alignment and sequence indexing

Bioinformatics

Volumn 27, Issue 13, 2011, Pages 1869-1870

  Walenz, Brian ^a   Florea, Liliana ^b  

^a J CRAIG VENTER INSTITUTE   (United States)

^b Bldg 142   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA;

ANIMAL; ARTICLE; COMPUTER PROGRAM; EVOLUTION; GENETICS; GENOME; HUMAN; METHODOLOGY; NUCLEOTIDE SEQUENCE; RNA SPLICING; SEQUENCE ALIGNMENT; VERTEBRATE;

ANIMALS; BASE SEQUENCE; BIOLOGICAL EVOLUTION; DNA, COMPLEMENTARY; GENOME; HUMANS; RNA SPLICING; SEQUENCE ALIGNMENT; SOFTWARE; VERTEBRATES;

EID: 79959385909     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr285     Document Type: Article

References (6)

1. Florea, L. et al. (1998) A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res., 8, 967-974.
2. Genome 10K Community of Scientists (2009) Genome 10K: a proposal to obtain wholegenome sequence for 10 000 vertebrate species. J. Hered., 100, 659-674.
3. Kent, W.J. (2002) BLAT - the BLAST-like alignment tool. Genome Res., 12, 656-664.
4. Turkey Genome Sequencing Consortium (2010) Changing the landscape of genome sequencing: the domestic turkey (Meleagris gallopavo) genome assembly and analysis. PLoS Biol., 8, e1000475.
5. Wu, T.D. and Watanabe, C.K. (2005) GMAP: a genomicmapping and alignment program for mRNA and EST sequences. Bioinformatics, 21, 1859-1875.
6. Zhou, L. et al. (2009) Sim4cc: a cross-species spliced alignment program. Nucleic Acids Res., 37, e80.