Estimating specific inherent optical properties of tropical coastal waters using bio-optical model inversion and in situ measurements: Case of the Berau estuary, East Kalimantan, Indonesia

Hydrobiologia

Volumn 658, Issue 1, 2011, Pages 197-211

  Ambarwulan, W ^a,b   Salama, M S ^a   Mannaerts, C M ^a   Verhoef, W ^a  

^a UNIVERSITY OF TWENTE   (Netherlands)

^b National Coordinating Agency For Survey and Mapping   (Indonesia)

Author keywords

Bio optical model; Chlorophyll a; Ocean optics; Subsurface irradiance reflectance; Total suspended matter; Tropical waters

Indexed keywords

BACKSCATTER; CHLOROPHYLL A; COASTAL WATER; CONCENTRATION (COMPOSITION); DATA SET; DISSOLVED ORGANIC MATTER; ESTIMATION METHOD; ESTUARINE ENVIRONMENT; IN SITU MEASUREMENT; IRRADIANCE; NUMERICAL MODEL; OCEAN COLOR; OPEN OCEAN; OPTICAL PROPERTY; REMOTE SENSING; SUSPENDED LOAD; TURBIDITY;

BERAU ESTUARY; EAST KALIMANTAN; INDONESIA;

EID: 79959347228     PISSN: 00188158     EISSN: 15735117     Source Type: Journal    
DOI: 10.1007/s10750-010-0473-7     Document Type: Article

References (56)

1. Albert, A. & C. D. Mobley, 2003. An analytical model for substance irradiance and remote sensing reflectance in deep and shallow case-2 waters. Optics Express 11(22): 2873-2890.
2. Astoreca, R., K. Ruddick, V. Rousseau, B. V. Mol, J. Y. Parent & C. Lancelot, 2006. Variability of the inherent and apparent optical properties in a highly turbid coastal area: impact on the calibration of remote sensing algorithms. EARSeL eProceedings 5(1): 1-17.
3. Babin, M., D. Stramski, G. M. Ferrari, H. Claustre, A. Bricaud, G. Obolenski & N. Hoepffner, 2003. Variation in the light absorption coefficient of phytoplankton, nonalgal particles, and dissolved organic matter in coastal waters around Europe. Journal of Geophysical Research 108(C7): 3211.
4. Babin, M., D. Stramski, G. M. Ferrari, H. Claustre, A. Bricaud, G. Obolenski & N. Hoepffner, 2004. Variation in the light absorption coefficient of phytoplankton, nonalgal particles, and dissolved organic matter in coastal waters around Europe. Journal of Geophysical Research 108: 3211.
5. Bricaud, A., A. Morel & A. L. Prieur, 1981. Absorption by dissolved organic matter of the sea (yellow substances) in the UV and visible domains. Limnology and Oceanography 26: 43-53.
6. Carder, K. L., F. R. Chen, C. P. Lee, S. Hawes & D. Kamykowski, 1999. Semi-analytic MODIS algorithms for chlorophyll a and absorption with bio-optical domains based on nitrate-depletion temperatures. Journal of Geophysical Research 104(C3): 5403-5421.
7. Chang, C. G., T. D. Dickey, C. D. Mobley, E. Boss & W. S. Pegau, 2003. Toward closure of upwelling radiance in coastal waters. Applied Optics 42(9): 1574-1582.
8. D'Sa, E. J. & R. L. Miller, 2005. Bio-optical properties of coastal waters. In Miller, R. L., C. E. Del Castillo & B. A. McKee (eds), Remote Sensing of Coastal Aquatic Environments: Technologies, Techniques and Applications. Springer, Dordrecht.
9. D'Sa, E. J., C. Hu, F. E. Muller-Karger & K. L. Carder, 2002. Estimation of colored dissolved organic matter and salinity fields in case 2 waters using SeaWiFS: examples from Florida Bay and Florida Shelf. Journal of Earth System Science 111(3): 197-207.
10. de Haan, J. F., J. M. M. Kokke, A. G. Dekker & M. Rijkeboer, 1999. Remote sensing algorithm development: operationalisation of tools for the analysis and processing of remote sensing data of coastal and inland waters. NBN 90 54 11 267 0.
11. Dekker, A. G., 1993. Detection of optical water quality parameters for eutrophic waters by high resolution remote sensing. Ph.D. Thesis, Free University, Amsterdam, The Netherlands: 1-240.
12. Dekker, A. G., S. W. M. Peters, M. Rijkeboer & H. Berghuis, 1999. Analytical processing of multi-temporal SPOT and Landsat images for estuarine management in Kalimantan Indonesia. In Nieuwenhuis, G. J. A., R. Vaughan & M. Molenaar (eds), 18th EARSeL Symposium on Operational Remote Sensing for Sustainable Development. A.A. Balkema, Rotterdam: 315-324.
13. Doerffer, R. & J. Fischer, 1994. Concentration of chlorophyll, suspended matter, and gelbstoff in case II waters derived from satellite coastal zone color scanner with inverse methods. Journal of Geophysical Research 99(C4): 7457-7466.
14. Doerffer, R. & H. Schiller, 2007. The MERIS Case 2 water algorithm. International Journal of Remote Sensing 28: 517-535.
15. Gallegos, C. L. & D. L. Correl, 1990. Modelling spectral diffuse attenuation, absorption and scattering coefficients in a turbid estuary. Limnology and Oceanography 35: 1486-1502.
16. Gege, P., 2005. The water colour simulator WASI. User manual for version 3. DLR Internal Report IB 564-01/05: 83 pp.
17. Glantz, M., R. Katz & N. Nicholls (eds), 1991. Teleconnections Linking Worldwide Climate Anomalies. Cambridge University Press, Cambridge.
18. Gordon, H. R., 1991. Absorption and scattering estimates from irradiance measurements: Monte Carlo simulation. Limnology and Oceanography 36: 769-777.
19. Gordon, H. R. & A. Y. Morel, 1983. Remote Assessment of Ocean Color for Interpretation of Satellite Visible Imagery: A Review. Springer, New York.
20. Gordon, H. R. & M. Wang, 1994. Retrieval of water-leaving radiance and aerosol optical thickness over the oceans with SeaWiFS: A preliminary algorithm. Applied Optics 33: 443-452.
21. Gordon, H. R., O. B. Brown & M. M. Jacobs, 1975. Computed relationship between the inherent and apparent optical properties of a flat homogeneous ocean. Applied Optics 14: 417-427.
22. Gordon, A. L., R. D. Susanto & A. Ffield, 1999. Through flow within Makassar Strait. Geophysical Research Letters 26(21): 3325-3328.
23. Haltrin, V. I. & R. A. Arnone, 2003. An algorithm to estimate concentrations of suspended particles in seawater from satellite optical images. In I. Levin & G. Gilbert (eds), Current Problems in Optic Natural Waters. Proceedings of the II International Conference ONW, St. Petersburg, Russia.
24. Hamre, B., Ø. Frette, S. R. Erga, J. J. Stamnes & K. Stamnes, 2003. Parameterization and analysis of the optical absorption and scattering coefficients in a Western Norwegian fjord: a case II water study. Applied Optics 42: 883-892.
25. Hautala, S. L., J. Sprintall, J. T. Potemra, J. C. Chong, W. Pandoe, N. Bray & A. G. Ilahude, 2001. Velocity structure and transport of the Indonesian through flow in the major straits restricting flow into the Indian Ocean. Journal of Geophysical Research 106(C6): 19527-19546.
26. Hendiarti, N., H. Siegel & T. Ohde, 2004. Investigation of different coastal processes in Indonesian waters using SeaWiFS data. Deep Sea Research II 51: 85-97.
27. Hooker, S. B. & S. Maritorena, 2000. An evaluation of oceanographic radiometers and deployment methodologies. Journal of Atmospheric and Ocean Technology 17: 811-830.
28. Ibelings, B., R. Vos, P. Boderie, H. Hakvoort & E. Hoogenboom, 2001. The RALLY project: remote sensing of algal blooms in Lake IJssel-integration with in situ data and computational modeling. RIZA report 2001.036, RIZA Institute for Inland Water Management and Waste Water Treatment.
29. IOCCG, 2006. Remote sensing of inherent optical properties: fundamentals, tests of algorithms, and applications. In Lee, Z.-P. (ed.), Reports of the International Ocean-Colour Coordinating Group, No. 5. IOCCG, Dartmouth, Canada.
30. Jerlov, N. G., 1976. Marine Optics. Elsevier, Amsterdam. 231 p.
31. Kahru, M. & B. G. Mitchell, 2001. Seasonal and non-seasonal variability of satellite derived chlorophyll and colored dissolved organic matter concentration in the California current. Journal of Geophysical Research 106: 2517-2529.
32. Kirk, J. T. O., 1984. Dependence of relationship between inherent and apparent optical properties of water on solar altitude. Limnology and Oceanography 29: 350-356.
33. Kratzer, S., C. Brockmann & G. Moore, 2008. Using MERIS full resolution data to monitor coastal waters-a case study from Himmerfjärden, a fjord-like bay in the northwestern Baltic Sea. Remote Sensing of Environment 112: 2284-2300.
34. Le, C., Y. Li, Y. Zha & Y. Sun, 2009. Specific absorption coefficient and the phytoplankton package effect in Lake Taihu, China. Hydrobiologia 619: 27-37.
35. Maritorena, S., D. A. Siegel & A. R. Peterson, 2002. Optimization of a semi-analytical ocean color model for globalscale applications. Applied Optics 41: 2705-2714.
36. Matthew, M. W., S. M. Adler-Golden, A. Berk, S. C. Richtsmeier, R. Y. Levine, L. S. Bernstein, P. K. Acharya, G. P. Anderson, G. W. Felde, M. P. Hoke, A. Ratkowski, H.-H. Burke, R. D. Kaiser, D. P. Miller, 2000. Status of atmospheric correction using a MODTRAN4-based algorithm. SPIE Proceeding, Algorithms for Multispectral, Hyperspectral, and Ultraspectral Imagery VI, Vol. 4049.
37. Mercado, J. M., T. Ramírez, & D. Cortés, 2007. Changes in nutrient concentration induced by hydrological variability and its effect on light absorption by phytoplankton in the Alborán Sea (Western Mediterranean Sea). Journal of Marine Systems. doi:10.1016/j.jmarsys.2007.05.009.
38. Mitchell, B. G. & D. A. Kiefer, 1988. Variability in the pigment specific fluorescence and absorption spectra in the northeastern Pacific Ocean. Deep Sea Research A 35: 665-689.
39. Morel, A., 1974. Optical properties of pure water and pure sea water. In Jerlov, N. G. & E. Steemann Nielsen (eds), Optical Aspects of Oceanography. Academic Press, London: 1-24.
40. Morel, A. & L. Prieur, 1977. Analysis of variations in ocean color. Limnology and Oceanography 22: 709-722.
41. Pope, R. M. & E. S. Fry, 1997. Absorption spectrum (380-700 nm) of pure water, II, integrating cavity measurements. Applied Optics 36: 8710-8723.
42. Preisendorfer, R. W., 1976. Hydrologic Optics. U.S. Department of Commerce, National Oceanic and Atmospheric Administration, Environmental Research Laboratories, Pacific Marine Environmental Laboratory.
43. Prieur, L. & S. Sathyendranath, 1981. An optical classification of coastal and oceanic waters based on the specific spectral absorption curves of phytoplankton pigments, dissolved organic matter, and other particulate materials. Limnology and Oceanography 26: 671-689.
44. Reynolds, R. A., D. Stramski & B. G. Mitchell, 2001. A chlorophyll dependent semi-analytical reflectance model derived from field measurements of absorption and backscattering coefficients within the Southern Ocean. Journal of Geophysical Research 106(C4): 7125-7138.
45. Salama, M. S. & F. Shen, 2010a. Stochastic inversion of ocean color data using the cross-entropy method. Optics Express 18(2): 479-499.
46. Salama, M. S. & F. Shen, 2010b. Simultaneous atmospheric correction and quantification of suspended particulate matter from orbital and geostationary earth observation sensors. Estuarine, Coastal and Shelf Sciences 86(3): 499-511.
47. Salama, M. S. & A. Stein, 2009. Error decomposition and estimation of inherent optical properties. Applied Optics 48: 4947-4962.
48. Salama, M. S., J. Monbaliu & P. Coppin, 2004. The atmospheric correction of AVHRR images. International Journal of Remote Sensing 25(7-8): 1349-1355.
49. Salama, M. S., A. Dekker, Z. Su, C. M. Mannaerts & W. Verhoef, 2009. Deriving inherent optical properties and associated inversion-uncertainties in the Dutch lakes. Hydrology and Earth System Sciences 13: 1113-1121.
50. Sathyendranath, S., L. Lazzara & L. Prieur, 1987. Variations in the spectral values of specific absorption of phytoplankton. Limnology and Oceanography 32(2): 403-415.
51. Sharkov, E. A., 1998. Remote Sensing of Tropical Region. John Wiley & Sons in association with Praxis Publishing, Chichester.
52. Smith, R. C. & K. S. Baker, 1981. Optical properties of the clearest natural waters (200-800 nm). Applied Optics 20: 177-184.
53. Stramski, D., A. Sciandra & H. Claustre, 2002. Effects of temperature, nitrogen, and light limitation on the optical properties of the marine diatom Thalassiosira pseudonana. Limnology and Oceanography 47: 392-403.
54. Susanto, R. D., T. S. Moore II & J. Marra, 2006. Ocean color variability in the Indonesian Seas during the SeaWiFS era. Geochemistry, Geophysics, Geosystem 7: Q05021. doi: 10.1029/2005GC001009.
55. Tilstone, G. H., G. F. Moore, K. Sørensen, R. Doerfeer, R. Røttgers, K. D. Ruddick, R. Pasterkamp & P. V. Jørgensen, 2002. Regional validation of MERIS chlorophyll products in North Sea coastal waters. REVAMP Methodologies EVGI-CT-2001-00049.
56. Van der Woerd, H. J. & R. Pasterkamp, 2001. A rigorous method to retrieve TSM concentrations from multi-temporal SPOT images in highly turbid coastal waters. 11ARSPC.