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Volumn 14, Issue 3, 2011, Pages 229-235

Metagenomic exploration of antibiotic resistance in soil

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT;

EID: 79959296377     PISSN: 13695274     EISSN: 18790364     Source Type: Journal    
DOI: 10.1016/j.mib.2011.04.010     Document Type: Review
Times cited : (80)

References (54)
  • 1
    • 77957820588 scopus 로고    scopus 로고
    • Antibiotic resistance in the environment: a link to the clinic?
    • Wright G.D. Antibiotic resistance in the environment: a link to the clinic?. Curr Opin Microbiol 2010, 13:589-594.
    • (2010) Curr Opin Microbiol , vol.13 , pp. 589-594
    • Wright, G.D.1
  • 3
    • 33846628530 scopus 로고    scopus 로고
    • How do antibiotic-producing bacteria ensure their self-resistance before antibiotic biosynthesis incapacitates them?
    • Hopwood D.A. How do antibiotic-producing bacteria ensure their self-resistance before antibiotic biosynthesis incapacitates them?. Mol Microbiol 2007, 63:937-940.
    • (2007) Mol Microbiol , vol.63 , pp. 937-940
    • Hopwood, D.A.1
  • 5
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann R.I., Ludwig W., Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 1995, 59:143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 7
    • 58549083738 scopus 로고    scopus 로고
    • Functional metagenomics reveals diverse beta-lactamases in a remote Alaskan soil
    • Allen H.K., Moe L.A., Rodbumrer J., Gaarder A., Handelsman J. Functional metagenomics reveals diverse beta-lactamases in a remote Alaskan soil. ISME J 2009, 3:243-251.
    • (2009) ISME J , vol.3 , pp. 243-251
    • Allen, H.K.1    Moe, L.A.2    Rodbumrer, J.3    Gaarder, A.4    Handelsman, J.5
  • 9
    • 33847151750 scopus 로고    scopus 로고
    • The antibiotic resistome: the nexus of chemical and genetic diversity
    • Wright G.D. The antibiotic resistome: the nexus of chemical and genetic diversity. Nat Rev Microbiol 2007, 5:175-186.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 175-186
    • Wright, G.D.1
  • 10
    • 0033594414 scopus 로고    scopus 로고
    • Fungus-growing ants use antibioticproducing bacteria to control garden parasites
    • Currie C.R., Scott J.A., Summerbell R.C., Malloch D. Fungus-growing ants use antibioticproducing bacteria to control garden parasites. Nature 1999, 398:701-704.
    • (1999) Nature , vol.398 , pp. 701-704
    • Currie, C.R.1    Scott, J.A.2    Summerbell, R.C.3    Malloch, D.4
  • 11
    • 0034881636 scopus 로고    scopus 로고
    • Competition and antibiosis in the biological control of potato scab
    • Neeno E.C., Kinkel L.L., Schottel J.L. Competition and antibiosis in the biological control of potato scab. Can J Microbiol 2001, 47:332-340.
    • (2001) Can J Microbiol , vol.47 , pp. 332-340
    • Neeno, E.C.1    Kinkel, L.L.2    Schottel, J.L.3
  • 13
    • 33748698411 scopus 로고    scopus 로고
    • The world of subinhibitory antibiotic concentrations
    • Davies J., Spiegelman G.B., Yim G. The world of subinhibitory antibiotic concentrations. Curr Opin Microbiol 2006, 9:445-453.
    • (2006) Curr Opin Microbiol , vol.9 , pp. 445-453
    • Davies, J.1    Spiegelman, G.B.2    Yim, G.3
  • 15
    • 77955953679 scopus 로고    scopus 로고
    • Meta-transcriptomic analysis of the response of river biofilms to pharmaceutical products using anonymous DNA microarrays
    • Yergeau E., Lawrence J.R., Waiser M.J., Korber D.R., Greer C.W. Meta-transcriptomic analysis of the response of river biofilms to pharmaceutical products using anonymous DNA microarrays. Appl Environ Microbiol 2010, 76:5432-5439.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 5432-5439
    • Yergeau, E.1    Lawrence, J.R.2    Waiser, M.J.3    Korber, D.R.4    Greer, C.W.5
  • 16
    • 77957980707 scopus 로고    scopus 로고
    • Origins and evolution of antibiotic resistance
    • Davies J., Davies D. Origins and evolution of antibiotic resistance. Microbiol Mol Biol Rev 2010, 74:417-433.
    • (2010) Microbiol Mol Biol Rev , vol.74 , pp. 417-433
    • Davies, J.1    Davies, D.2
  • 17
    • 0033936567 scopus 로고    scopus 로고
    • Mutation frequencies and antibiotic resistance
    • Martinez J.L., Baquero F. Mutation frequencies and antibiotic resistance. Antimicrob Agents Chemother 2000, 44:1771-1777.
    • (2000) Antimicrob Agents Chemother , vol.44 , pp. 1771-1777
    • Martinez, J.L.1    Baquero, F.2
  • 18
    • 78651066562 scopus 로고    scopus 로고
    • The joys and terrors of fast adaptation: new findings elucidate antibiotic resistance and natural selection
    • Roth J.R. The joys and terrors of fast adaptation: new findings elucidate antibiotic resistance and natural selection. Mol Microbiol 2011, 79:279-282.
    • (2011) Mol Microbiol , vol.79 , pp. 279-282
    • Roth, J.R.1
  • 19
    • 79952002621 scopus 로고    scopus 로고
    • Subinhibitory concentrations of ciprofloxacin induce SOS response and mutations of antibiotic resistance in bacteria
    • Wang P., Zhang X.N., Wang L., Zhen Z., Tang M.L., Li J.B. Subinhibitory concentrations of ciprofloxacin induce SOS response and mutations of antibiotic resistance in bacteria. Ann Microbiol 2010, 60:511-517.
    • (2010) Ann Microbiol , vol.60 , pp. 511-517
    • Wang, P.1    Zhang, X.N.2    Wang, L.3    Zhen, Z.4    Tang, M.L.5    Li, J.B.6
  • 22
    • 33846422394 scopus 로고    scopus 로고
    • Genes that enhance the ecological fitness of Shewanella oneidensis MR-1 in sediments reveal the value of antibiotic resistance
    • Groh J.L., Luo Q., Ballard J.D., Krumholz L.R. Genes that enhance the ecological fitness of Shewanella oneidensis MR-1 in sediments reveal the value of antibiotic resistance. Appl Environ Microbiol 2007, 73:492-498.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 492-498
    • Groh, J.L.1    Luo, Q.2    Ballard, J.D.3    Krumholz, L.R.4
  • 23
    • 57049167197 scopus 로고    scopus 로고
    • Complex ciprofloxacin resistome revealed by screening a Pseudomonas aeruginosa mutant library for altered susceptibility
    • Breidenstein E.B., Khaira B.K., Wiegand I., Overhage J., Hancock R.E. Complex ciprofloxacin resistome revealed by screening a Pseudomonas aeruginosa mutant library for altered susceptibility. Antimicrob Agents Chemother 2008, 52:4486-4491.
    • (2008) Antimicrob Agents Chemother , vol.52 , pp. 4486-4491
    • Breidenstein, E.B.1    Khaira, B.K.2    Wiegand, I.3    Overhage, J.4    Hancock, R.E.5
  • 24
    • 33750580687 scopus 로고    scopus 로고
    • Genes involved in intrinsic antibiotic resistance of Acinetobacter baylyi
    • Gomez M.J., Neyfakh A.A. Genes involved in intrinsic antibiotic resistance of Acinetobacter baylyi. Antimicrob Agents Chemother 2006, 50:3562-3567.
    • (2006) Antimicrob Agents Chemother , vol.50 , pp. 3562-3567
    • Gomez, M.J.1    Neyfakh, A.A.2
  • 25
    • 50249172242 scopus 로고    scopus 로고
    • Determination of antibiotic hypersensitivity among 4,000 single-gene-knockout mutants of Escherichia coli
    • Tamae C., Liu A., Kim K., Sitz D., Hong J., Becket E., Bui A., Solaimani P., Tran K.P., Yang H., et al. Determination of antibiotic hypersensitivity among 4,000 single-gene-knockout mutants of Escherichia coli. J Bacteriol 2008, 190:5981-5988.
    • (2008) J Bacteriol , vol.190 , pp. 5981-5988
    • Tamae, C.1    Liu, A.2    Kim, K.3    Sitz, D.4    Hong, J.5    Becket, E.6    Bui, A.7    Solaimani, P.8    Tran, K.P.9    Yang, H.10
  • 26
    • 34247277741 scopus 로고    scopus 로고
    • Antibiotic interactions that select against resistance
    • Chait R., Craney A., Kishony R. Antibiotic interactions that select against resistance. Nature 2007, 446:668-671.
    • (2007) Nature , vol.446 , pp. 668-671
    • Chait, R.1    Craney, A.2    Kishony, R.3
  • 27
    • 78650158551 scopus 로고    scopus 로고
    • A differential drug screen for compounds that select against antibiotic resistance
    • Chait R., Shrestha S., Shah A.K., Michel J.B., Kishony R. A differential drug screen for compounds that select against antibiotic resistance. PLoS ONE 2010, 5:e15179.
    • (2010) PLoS ONE , vol.5
    • Chait, R.1    Shrestha, S.2    Shah, A.K.3    Michel, J.B.4    Kishony, R.5
  • 29
    • 77955562279 scopus 로고    scopus 로고
    • Novel florfenicol and chloramphenicol resistance gene discovered in Alaskan soil by using functional metagenomics
    • Lang K.S., Anderson J.M., Schwarz S., Williamson L., Handelsman J., Singer R.S. Novel florfenicol and chloramphenicol resistance gene discovered in Alaskan soil by using functional metagenomics. Appl Environ Microbiol 2010, 76:5321-5326.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 5321-5326
    • Lang, K.S.1    Anderson, J.M.2    Schwarz, S.3    Williamson, L.4    Handelsman, J.5    Singer, R.S.6
  • 30
    • 34249076303 scopus 로고    scopus 로고
    • Evolution and ecology of antibiotic resistance genes
    • Aminov R.I., MacKie R.I. Evolution and ecology of antibiotic resistance genes. FEMS Microbiol Lett 2007, 271:147-161.
    • (2007) FEMS Microbiol Lett , vol.271 , pp. 147-161
    • Aminov, R.I.1    MacKie, R.I.2
  • 36
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    • Dohm J.C., Lottaz C., Borodina T., Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 2008, 36:e105.
    • (2008) Nucleic Acids Res , vol.36
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 38
    • 50949097622 scopus 로고    scopus 로고
    • Recovery of diverse genes for class 1 integron-integrases from environmental DNA samples
    • Gillings M.R., Krishnan S., Worden P.J., Hardwick S.A. Recovery of diverse genes for class 1 integron-integrases from environmental DNA samples. FEMS Microbiol Lett 2008, 287:56-62.
    • (2008) FEMS Microbiol Lett , vol.287 , pp. 56-62
    • Gillings, M.R.1    Krishnan, S.2    Worden, P.J.3    Hardwick, S.A.4
  • 41
    • 57049171854 scopus 로고    scopus 로고
    • New tools for discovering and characterizing microbial diversity
    • Cardenas E., Tiedje J.M. New tools for discovering and characterizing microbial diversity. Curr Opin Biotechnol 2008, 19:544-549.
    • (2008) Curr Opin Biotechnol , vol.19 , pp. 544-549
    • Cardenas, E.1    Tiedje, J.M.2
  • 42
    • 77956727495 scopus 로고    scopus 로고
    • Recent progress and new challenges in metagenomics for biotechnology
    • Chistoserdova L. Recent progress and new challenges in metagenomics for biotechnology. Biotechnol Lett 2010, 32:1351-1359.
    • (2010) Biotechnol Lett , vol.32 , pp. 1351-1359
    • Chistoserdova, L.1
  • 43
    • 73949090104 scopus 로고    scopus 로고
    • Applications of ultra-high-throughput sequencing
    • Fox S., Filichkin S., Mockler T.C. Applications of ultra-high-throughput sequencing. Methods Mol Biol 2009, 553:79-108.
    • (2009) Methods Mol Biol , vol.553 , pp. 79-108
    • Fox, S.1    Filichkin, S.2    Mockler, T.C.3
  • 44
    • 79952108717 scopus 로고    scopus 로고
    • Sequencing and genome assembly using next-generation technologies
    • Nagarajan N., Pop M. Sequencing and genome assembly using next-generation technologies. Methods Mol Biol 2010, 673:1-17.
    • (2010) Methods Mol Biol , vol.673 , pp. 1-17
    • Nagarajan, N.1    Pop, M.2
  • 46
    • 77649206077 scopus 로고    scopus 로고
    • Expanding small-molecule functional metagenomics through parallel screening of broad-host-range cosmid environmental DNA libraries in diverse Proteobacteria
    • Craig J.W., Chang F.Y., Kim J.H., Obiajulu S.C., Brady S.F. Expanding small-molecule functional metagenomics through parallel screening of broad-host-range cosmid environmental DNA libraries in diverse Proteobacteria. Appl Environ Microbiol 2010, 76:1633-1641.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 1633-1641
    • Craig, J.W.1    Chang, F.Y.2    Kim, J.H.3    Obiajulu, S.C.4    Brady, S.F.5
  • 47
    • 77249153701 scopus 로고    scopus 로고
    • Genome-minimized Streptomyces host for the heterologous expression of secondary metabolism
    • Komatsu M., Uchiyama T., Omura S., Cane D.E., Ikeda H. Genome-minimized Streptomyces host for the heterologous expression of secondary metabolism. Proc Natl Acad Sci U S A 2010, 107:2646-2651.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 2646-2651
    • Komatsu, M.1    Uchiyama, T.2    Omura, S.3    Cane, D.E.4    Ikeda, H.5
  • 48
    • 67650161493 scopus 로고    scopus 로고
    • Suppression subtractive hybridisation allows selective sampling of metagenomic subsets of interest
    • Chew Y.V., Holmes A.J. Suppression subtractive hybridisation allows selective sampling of metagenomic subsets of interest. J Microbiol Methods 2009, 78:136-143.
    • (2009) J Microbiol Methods , vol.78 , pp. 136-143
    • Chew, Y.V.1    Holmes, A.J.2
  • 49
    • 67349208005 scopus 로고    scopus 로고
    • A new approach to retrieve full lengths of functional genes from soil by PCR-DGGE and metagenome walking
    • Morimoto S., Fujii T. A new approach to retrieve full lengths of functional genes from soil by PCR-DGGE and metagenome walking. Appl Microbiol Biotechnol 2009, 83:389-396.
    • (2009) Appl Microbiol Biotechnol , vol.83 , pp. 389-396
    • Morimoto, S.1    Fujii, T.2
  • 50
    • 77956253021 scopus 로고    scopus 로고
    • Detection of denitrification genes by in situ rolling circle amplification-fluorescence in situ hybridization to link metabolic potential with identity inside bacterial cells
    • Hoshino T., Schramm A. Detection of denitrification genes by in situ rolling circle amplification-fluorescence in situ hybridization to link metabolic potential with identity inside bacterial cells. Environ Microbiol 2010, 12:2508-2517.
    • (2010) Environ Microbiol , vol.12 , pp. 2508-2517
    • Hoshino, T.1    Schramm, A.2
  • 51
    • 33745127708 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization-flow cytometry-cell sorting-based method for separation and enrichment of type I and type II methanotroph populations
    • Kalyuzhnaya M.G., Zabinsky R., Bowerman S., Baker D.R., Lidstrom M.E., Chistoserdova L. Fluorescence in situ hybridization-flow cytometry-cell sorting-based method for separation and enrichment of type I and type II methanotroph populations. Appl Environ Microbiol 2006, 72:4293-4301.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4293-4301
    • Kalyuzhnaya, M.G.1    Zabinsky, R.2    Bowerman, S.3    Baker, D.R.4    Lidstrom, M.E.5    Chistoserdova, L.6


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