The Pif1 family in prokaryotes: What are our helicases doing in your bacteria?

Molecular Biology of the Cell

Volumn 22, Issue 12, 2011, Pages 1955-1959

  Bochman, Matthew L ^a   Judge, Colleen P ^a   Zakian, Virginia A ^a  

^a PRINCETON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; HELICASE; PIF1 PROTEIN; UNCLASSIFIED DRUG;

BACTERIUM; DNA RECOMBINATION; DNA REPLICATION; EUKARYOTE; GENE SEQUENCE; MITOCHONDRIAL GENOME; NONHUMAN; PRIORITY JOURNAL; PROKARYOTE; REVIEW; RNA STRUCTURE; TELOMERE;

BACTERIA; BASE SEQUENCE; DNA HELICASES; DNA REPAIR; DNA REPLICATION; MITOCHONDRIA; PHYLOGENY; RECOMBINATION, GENETIC;

EUKARYOTA; PROKARYOTA;

EID: 79959272474     PISSN: 10591524     EISSN: 19394586     Source Type: Journal    
DOI: 10.1091/mbc.E11-01-0045     Document Type: Review

References (31)

1. Azvolinsky A, Dunaway S, Torres JZ, Bessler JB, Zakian VA (2006). The S. cerevisiae Rrm3p DNA helicase moves with the replication fork and affects replication of all yeast chromosomes. Genes Dev 20, 3104-3116. (Pubitemid 44790626)
2. Azvolinsky A, Giresi PG, Lieb JD, Zakian VA (2009). Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae. Mol Cell 34, 722-734.
3. Bochman ML, Sabouri N, Zakian VA (2010). Unwinding the functions of the Pif1 family helicases. DNA Repair (Amst) 9, 237-249.
4. Boubakri H, de Septenville AL, Viguera E, Michel B (2010). The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo. EMBO J 29, 145-157.
5. Boule JB, Vega LR, Zakian VA (2005). The yeast Pif1p helicase removes telomerase from telomeric DNA. Nature 438, 57-61. (Pubitemid 41599817)
6. Boule JB, Zakian VA (2007). The yeast Pif1p DNA helicase preferentially unwinds RNA DNA substrates. Nucleic Acids Res 35, 5809-5818.
7. Capra JA, Paeschke K, Singh M, Zakian VA (2010). G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae. PLoS Comput Biol 6, e1000861.
8. Casjens SR, Huang WM (2008). Prokaryotic telomeres: Replication mechanisms and evolution. In: Origin and Evolution of Telomeres, ed. J Nosek and L Tomáska, Austin, TX: Landes Bioscience.
9. Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, Bork P (2006). Toward automatic reconstruction of a highly resolved tree of life. Science 311, 1283-1287.
10. Foury F, Dyck EV (1985). A PIF-dependent recombinogenic signal in the mitochondrial DNA of yeast. EMBO J 4, 3525-3530.
11. Henze K, Martin W (2001). How do mitochondrial genes get into the nucleus? Trends Genet 17, 383-387.
12. Huppert JL, Bugaut A, Kumari S, Balasubramanian S (2008). G-quadruplexes: the beginning and end of UTRs. Nucleic Acids Res 36, 6260-6268.
13. Ivessa AS, Lenzmeier BA, Bessler JB, Goudsouzian LK, Schnakenberg SL, Zakian VA (2003). The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes. Mol Cell 12, 1525-1536. (Pubitemid 38037020)
14. Ivessa AS, Zhou JQ, Zakian VA (2000). The Saccharomyces Pif1p DNA helicase and the highly related Rrm3p have opposite effects on replication fork progression in ribosomal DNA. Cell 100, 479-489.
15. Keil RL, McWilliams AD (1993). A gene with specific and global effects on recombination of sequences from tandemly repeated genes in Saccharomyces cerevisiae. Genetics 135, 711-718. (Pubitemid 23324815)
16. Lambert C, Chang CY, Capeness MJ, Sockett RE (2010). The first bite-profiling the predatosome in the bacterial pathogen Bdellovibrio. PLoS One 5, e8599.
17. Li X, Manley JL (2006). Cotranscriptional processes and their influence on genome stability. Genes Dev 20, 1838-1847. (Pubitemid 44079322)
18. Matson SW (1989). Escherichia coli DNA helicase II (uvrD gene product) catalyzes the unwinding of DNA.RNA hybrids in vitro. Proc Natl Acad Sci USA 86, 4430-4434.
19. Montague M, Barnes C, Smith HO, Chuang RY, Vashee S (2009). The evolution of RecD outside of the RecBCD complex. J Mol Evol 69, 360-371.
20. Neidle S, Balasubramanian S (2006). Quadruplex Nucleic Acids, Cambridge, UK: Royal Society of Chemistry.
21. Nosek J, Tomaska L, Fukuhara H, Suyama Y, Kovac L (1998). Linear mitochondrial genomes: 30 years down the line. Trends Genet 14, 184-188. (Pubitemid 28244242)
22. Paeschke K, Capra JA, Zakian VA (2011). DNA replication through Gquadruplex motifs is promoted by the Saccharomyces cerevisiae Pif1 DNA helicase. Cell 145, 678-691.
23. Paeschke K, Juranek S, Simonsson T, Hempel A, Rhodes D, Lipps HJ (2008). Telomerase recruitment by the telomere end binding protein-beta facilitates G-quadruplex DNA unfolding in ciliates. Nat Struct Mol Biol 15, 598-604. (Pubitemid 351799132)
24. Pike JE, Henry RA, Burgers PM, Campbell JL, Bambara RA (2010). An alternative pathway for Okazaki fragment processing: resolution of fold-back flaps by Pif1 helicase. J Biol Chem 285, 41712-41723.
25. Rawal P, Kummarasetti VB, Ravindran J, Kumar N, Halder K, Sharma R, Mukerji M, Das SK, Chowdhury S (2006). Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation. Genome Res 16, 644-655.
26. Ribeyre C, Lopes J, Boule JB, Piazza A, Guedin A, Zakian VA, Mergny JL, Nicolas A (2009). The yeast Pif1 helicase prevents genomic instability caused by G-quadruplex-forming CEB1 sequences in vivo. PLoS Genet 5, e1000475.
27. Sanders CM (2010). Human Pif1 helicase is a G-quadruplex DNA-binding protein with G-quadruplex DNA-unwinding activity. Biochem J 430, 119-128.
28. Shiratori A, Shibata T, Arisawa M, Hanaoka F, Murakami Y, Eki T (1999). Systematic identification, classification, and characterization of the open reading frames which encode novel helicase-related proteins in Saccharomyces cerevisiae by gene disruption and Northern analysis. Yeast 15, 219-253. (Pubitemid 29083957)
29. Stewart P, Rosa PA, Tilly K (2004). Linear Plasmids in Bacteria: Common origins, Uncommon Ends. In: Plasmid Biology, ed. BE Funnell and GJ Phillips, Washington, DC: ASM Press, 291-301.
30. Wu X, Maizels N (2001). Substrate-specific inhibition of RecQ helicase. Nucleic Acids Res 29, 1765-1771. (Pubitemid 32427857)
31. Zhou J, Monson EK, Teng SC, Schulz VP, Zakian VA (2000). Pif1p helicase, a catalytic inhibitor of telomerase in yeast. Science 289, 771-774. (Pubitemid 30650196)