-
1
-
-
0037372658
-
Human population genetic structure and inference of group membership
-
Bamshad, M. J., Wooding, S., Watkins, W. S., Ostler, C. T., Batzer, M. A. & Jorde, L. B. (2003) Human population genetic structure and inference of group membership. Nat Genet 72, 578-589.
-
(2003)
Nat Genet
, vol.72
, pp. 578-589
-
-
Bamshad, M.J.1
Wooding, S.2
Watkins, W.S.3
Ostler, C.T.4
Batzer, M.A.5
Jorde, L.B.6
-
2
-
-
41549136385
-
Ancestry estimation and correction for population stratification in molecular epidemiologic association studies
-
Barnholtz-Sloan, J. S., McEvoy, B., Shriver, M. D. & Rebbeck, T. R. (2008) Ancestry estimation and correction for population stratification in molecular epidemiologic association studies. Cancer Epidemiol Biomarkers Prev 17, 471-477.
-
(2008)
Cancer Epidemiol Biomarkers Prev
, vol.17
, pp. 471-477
-
-
Barnholtz-Sloan, J.S.1
McEvoy, B.2
Shriver, M.D.3
Rebbeck, T.R.4
-
3
-
-
43249088516
-
Forensically relevant SNP classes
-
Budowle, B. & van Daal, A. (2008) Forensically relevant SNP classes. BioTechniques 44, 603-610.
-
(2008)
BioTechniques
, vol.44
, pp. 603-610
-
-
Budowle, B.1
van Daal, A.2
-
4
-
-
33845481812
-
Variable selection for logistic regression using a prediction-focused information criterion
-
Claeskens, G., Croux, C. & Kerckhoven, J. V. (2006) Variable selection for logistic regression using a prediction-focused information criterion. Biometrics 62, 972-979.
-
(2006)
Biometrics
, vol.62
, pp. 972-979
-
-
Claeskens, G.1
Croux, C.2
Kerckhoven, J.V.3
-
5
-
-
33645918323
-
Investigation of single-nucleotide polymorphisms associated with ethnicity
-
Progress in Forensic Genetics 11-Proceedings of the 21st International ISFG Congress.
-
Daniel, R., Walsh, S. J. & Piper, A. (2006) Investigation of single-nucleotide polymorphisms associated with ethnicity. Progress in Forensic Genetics 11-Proceedings of the 21st International ISFG Congress. International Congress Series 1288, 79-81.
-
(2006)
International Congress Series
, vol.1288
, pp. 79-81
-
-
Daniel, R.1
Walsh, S.J.2
Piper, A.3
-
6
-
-
84950461478
-
Estimating the error rate of a prediction rule: Improvement on cross-validation
-
Efron, B. (1983) Estimating the error rate of a prediction rule: Improvement on cross-validation. J Am Stat Assoc 78, 316-331.
-
(1983)
J Am Stat Assoc
, vol.78
, pp. 316-331
-
-
Efron, B.1
-
7
-
-
80053264999
-
How biased is the apparent error rate of a prediction rule?
-
Efron, B. (1986) How biased is the apparent error rate of a prediction rule? J Am Stat Assoc 81, 461-470.
-
(1986)
J Am Stat Assoc
, vol.81
, pp. 461-470
-
-
Efron, B.1
-
8
-
-
0031536511
-
Improvements on cross-validation: The 632+ bootstrap method
-
Efron, B. & Tibshirani, R. (1997) Improvements on cross-validation: The 632+ bootstrap method. J Am Stat Assoc 92, 548-560.
-
(1997)
J Am Stat Assoc
, vol.92
, pp. 548-560
-
-
Efron, B.1
Tibshirani, R.2
-
9
-
-
0000472542
-
Estimating phylogenetic trees from distance matrices
-
Farris, J. S. (1972) Estimating phylogenetic trees from distance matrices. Amer Nat 106, 645-668.
-
(1972)
Amer Nat
, vol.106
, pp. 645-668
-
-
Farris, J.S.1
-
10
-
-
12144285594
-
Assessing the impact of population stratification on genetic association studies
-
Freedman, M. L., Reich, D., Penney, K. L., McDonald, G. J., Mignault, A. A., Patterson, N., Gabriel, S. B., Topol, E. J., Smoller, J. W., Pato, C. N., Pato, M. T., Petryshen, T. L., Kolonel, L. N., Lander, E. S., Sklar, P., Henderson, B., Hirschhorn, J. N. & Altshuler, D. (2004) Assessing the impact of population stratification on genetic association studies. Nat Genet 36, 388-393.
-
(2004)
Nat Genet
, vol.36
, pp. 388-393
-
-
Freedman, M.L.1
Reich, D.2
Penney, K.L.3
McDonald, G.J.4
Mignault, A.A.5
Patterson, N.6
Gabriel, S.B.7
Topol, E.J.8
Smoller, J.W.9
Pato, C.N.10
Pato, M.T.11
Petryshen, T.L.12
Kolonel, L.N.13
Lander, E.S.14
Sklar, P.15
Henderson, B.16
Hirschhorn, J.N.17
Altshuler, D.18
-
11
-
-
0003684449
-
-
Springer Series in Statistics. New York, NY, USA: Springer New York Inc.
-
Hastie, T., Tibshirani, R. & Friedman, J. (2001) The Elements of Statistical Learning. Springer Series in Statistics. New York, NY, USA: Springer New York Inc.
-
(2001)
The Elements of Statistical Learning
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.3
-
12
-
-
33644871186
-
TAMAL: An integrated approach to choosing SNPs for genetic studies of human complex traits
-
Hemminger, B. M., Saelim, B. & Sullivan, P. F. (2006) TAMAL: An integrated approach to choosing SNPs for genetic studies of human complex traits. Bioinformatics 22, 626-627.
-
(2006)
Bioinformatics
, vol.22
, pp. 626-627
-
-
Hemminger, B.M.1
Saelim, B.2
Sullivan, P.F.3
-
13
-
-
39749197456
-
Genotype, haplotype, and copy number variation in worldwide human populations
-
Jakobsson, M., Scholz, S. W., Scheet, P., Gibbs, J. R., VanLiere, J. M., Fung, H.-C., Szpiech, Z. A., Degnan, J. H., Wang, K., Guerreiro, R., Bras, J. M., Schymick, J. C., Hernandez, D. G., Traynor, B. J., Simon-Sanchez, J., Matarin, M., Britton, A., van de Leemput, J., Rafferty, I., Bucan, M., Cann, H. M., Hardy, J. A., Rosenberg, N. & Singleton, A. B. (2008) Genotype, haplotype, and copy number variation in worldwide human populations. Nature 451, 998-10003.
-
(2008)
Nature
, vol.451
, pp. 998-10003
-
-
Jakobsson, M.1
Scholz, S.W.2
Scheet, P.3
Gibbs, J.R.4
VanLiere, J.M.5
Fung, H.-C.6
Szpiech, Z.A.7
Degnan, J.H.8
Wang, K.9
Guerreiro, R.10
Bras, J.M.11
Schymick, J.C.12
Hernandez, D.G.13
Traynor, B.J.14
Simon-Sanchez, J.15
Matarin, M.16
Britton, A.17
van de Leemput, J.18
Rafferty, I.19
Bucan, M.20
Cann, H.M.21
Hardy, J.A.22
Rosenberg, N.23
Singleton, A.B.24
more..
-
14
-
-
85031896203
-
Genetic variation, classification and 'race'
-
Jorde, L. B. & Wooding, S. P. (2004) Genetic variation, classification and 'race'. Nat Genet 36, s28-s33.
-
(2004)
Nat Genet
, vol.36
-
-
Jorde, L.B.1
Wooding, S.P.2
-
15
-
-
33645470540
-
Proportioning whole genome single nucleotid polymorphism diversity for the identification of geographic population structure and genetic ancestry
-
Lao, O., Duijn, K. V., Kersbergen, P., Knijff, P. D. & Kayser, M. (2006) Proportioning whole genome single nucleotid polymorphism diversity for the identification of geographic population structure and genetic ancestry. Am J Hum Genet 78, 680-690.
-
(2006)
Am J Hum Genet
, vol.78
, pp. 680-690
-
-
Lao, O.1
Duijn, K.V.2
Kersbergen, P.3
Knijff, P.D.4
Kayser, M.5
-
16
-
-
39749181521
-
Worldwide human relationships inferred from genome-wide patterns of variation
-
Li, J. Z., Absher, D. M., Tang, H., Southwick, A. M., Casto, A. M., Ramachandran, S., Cann, H. M., Barsh, G. S., Feldman, M., Cavalli-Sforza, L. L. & Myers, R. M. (2008) Worldwide human relationships inferred from genome-wide patterns of variation. Science 319, 1100-1104.
-
(2008)
Science
, vol.319
, pp. 1100-1104
-
-
Li, J.Z.1
Absher, D.M.2
Tang, H.3
Southwick, A.M.4
Casto, A.M.5
Ramachandran, S.6
Cann, H.M.7
Barsh, G.S.8
Feldman, M.9
Cavalli-Sforza, L.L.10
Myers, R.M.11
-
17
-
-
0035371825
-
Inferring ethnic origin by means of an str profile
-
Lowe, A. L., Urquhart, A., Foreman, L. A. & Evett, I. W. (2001) Inferring ethnic origin by means of an str profile. Forensic Sci Int 119, 17-22.
-
(2001)
Forensic Sci Int
, vol.119
, pp. 17-22
-
-
Lowe, A.L.1
Urquhart, A.2
Foreman, L.A.3
Evett, I.W.4
-
18
-
-
2442585696
-
The effects of human population structure on large genetic association studies
-
Marchini, J., Cardon, L. R., Phillips, M. S. & Donnelly, P. (2004) The effects of human population structure on large genetic association studies. Nat Genet 36, 512-517.
-
(2004)
Nat Genet
, vol.36
, pp. 512-517
-
-
Marchini, J.1
Cardon, L.R.2
Phillips, M.S.3
Donnelly, P.4
-
19
-
-
0003612091
-
-
Englewood Cliffs, NJ: Prentice Hall.
-
Michie, D., Spiegelhalter, D. J. & Taylor, C. C. (1994) Machine learning, neural and statistical classification. Englewood Cliffs, NJ: Prentice Hall.
-
(1994)
Machine learning, neural and statistical classification
-
-
Michie, D.1
Spiegelhalter, D.J.2
Taylor, C.C.3
-
20
-
-
69249096209
-
An ancestry informative marker set for determining continental origin: Validation and extension using human genome diversity panels
-
Nassir, R., Kosoy, R., Tian, C., White, P., Butler, L., Silva, G., Kittles, R., Alarcon-Riquelme, M., Gregersen, P., Belmont, J., De La Vega, F. & Seldin, M. (2009) An ancestry informative marker set for determining continental origin: Validation and extension using human genome diversity panels. BMC Genetics 10, 39.
-
(2009)
BMC Genetics
, vol.10
, pp. 39
-
-
Nassir, R.1
Kosoy, R.2
Tian, C.3
White, P.4
Butler, L.5
Silva, G.6
Kittles, R.7
Alarcon-Riquelme, M.8
Gregersen, P.9
Belmont, J.10
De La Vega, F.11
Seldin, M.12
-
21
-
-
34848879778
-
Pca-correlated snps for structure identification in worldwide human populations
-
Paschou, P., Ziv, E., Burchard, E. G., Choudhry, S., Rodriguez-Cintron, W., Mahoney, M. W. & Drineas, P. (2007) Pca-correlated snps for structure identification in worldwide human populations. PLoS Genet 3, e160.
-
(2007)
PLoS Genet
, vol.3
-
-
Paschou, P.1
Ziv, E.2
Burchard, E.G.3
Choudhry, S.4
Rodriguez-Cintron, W.5
Mahoney, M.W.6
Drineas, P.7
-
22
-
-
34548494874
-
Inferring ancestral origin using a single multiplex assay of ancestry-informative marker snps
-
Phillips, C., Salas, A., Sanchez, J., Fondevila, M., Gomez-Tato, A., Alvarez-Dios, J., Calaza, M., de Cal, M. C., Ballard, D., Lareu, M. & Carracedo, A. (2007) Inferring ancestral origin using a single multiplex assay of ancestry-informative marker snps. Forensic Sci Int Genet 1, 273-280.
-
(2007)
Forensic Sci Int Genet
, vol.1
, pp. 273-280
-
-
Phillips, C.1
Salas, A.2
Sanchez, J.3
Fondevila, M.4
Gomez-Tato, A.5
Alvarez-Dios, J.6
Calaza, M.7
de Cal, M.C.8
Ballard, D.9
Lareu, M.10
Carracedo, A.11
-
23
-
-
28744455932
-
Algorithms for selecting informative marker panels for population assignment
-
Rosenberg, N. A. (2005) Algorithms for selecting informative marker panels for population assignment. J Comput Biol 12, 1183-1201.
-
(2005)
J Comput Biol
, vol.12
, pp. 1183-1201
-
-
Rosenberg, N.A.1
-
24
-
-
0347362518
-
Information on genetic markers for inference of ancestry
-
Rosenberg, N. A., Li, L. M., Wark, R. & Pritchard, J. K. (2003) Information on genetic markers for inference of ancestry. Am J Hum Genet 73, 1402-1422.
-
(2003)
Am J Hum Genet
, vol.73
, pp. 1402-1422
-
-
Rosenberg, N.A.1
Li, L.M.2
Wark, R.3
Pritchard, J.K.4
-
25
-
-
0037147189
-
Genetic structure of human populations
-
Rosenberg, N. A., Pritchard, J. K., Weber, J. L., Cann, H. M., Kidd, K. K., Zhivotovsky, L. A. & Feldman, M. W. (2002) Genetic structure of human populations. Science 298, 2381-2385.
-
(2002)
Science
, vol.298
, pp. 2381-2385
-
-
Rosenberg, N.A.1
Pritchard, J.K.2
Weber, J.L.3
Cann, H.M.4
Kidd, K.K.5
Zhivotovsky, L.A.6
Feldman, M.W.7
-
26
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
27
-
-
38949093617
-
Application of ancestry informative markers to association studies in european americans
-
Seldin, M. F. & Price, A. L. (2008) Application of ancestry informative markers to association studies in european americans. PLoS Genet 4, e5.
-
(2008)
PLoS Genet
, vol.4
-
-
Seldin, M.F.1
Price, A.L.2
-
28
-
-
0030946551
-
Ethnic-affiliation estimation by use of population-specific DNA markers
-
Shriver, M. D., Smith, M. W., Jin, L., Marcini, A., Akey, J. M., Deka, R. & Ferrell, R. E. (1997) Ethnic-affiliation estimation by use of population-specific DNA markers. Am J Hum Genet 60, 957-964.
-
(1997)
Am J Hum Genet
, vol.60
, pp. 957-964
-
-
Shriver, M.D.1
Smith, M.W.2
Jin, L.3
Marcini, A.4
Akey, J.M.5
Deka, R.6
Ferrell, R.E.7
-
29
-
-
27544501017
-
Measures of human population structure show heterogeneity among genomic regions
-
Weir, B. S., Cardon, L. R., Anderson, A. D., Nielsen, D. M. & Hill, W. G. (2005) Measures of human population structure show heterogeneity among genomic regions. Genome Res 15, 1468-1476.
-
(2005)
Genome Res
, vol.15
, pp. 1468-1476
-
-
Weir, B.S.1
Cardon, L.R.2
Anderson, A.D.3
Nielsen, D.M.4
Hill, W.G.5
-
30
-
-
27944436638
-
SNPselector: A web tool for selecting SNPs for genetic association studies
-
Xu, H., Gregory, S. G., Hauser, E. R., Stenger, J. E., Pericak-Vance, M. A., Vance, J. M., Zuchner, S. & Hauser, M. A. (2005) SNPselector: A web tool for selecting SNPs for genetic association studies. Bioinformatics 21, 4181-4186.
-
(2005)
Bioinformatics
, vol.21
, pp. 4181-4186
-
-
Xu, H.1
Gregory, S.G.2
Hauser, E.R.3
Stenger, J.E.4
Pericak-Vance, M.A.5
Vance, J.M.6
Zuchner, S.7
Hauser, M.A.8
-
31
-
-
53049090475
-
Japanese population structure, based on SNP genotypes from 7003 individuals compared to other ethnic groups: Effects on population-based association studies
-
Yamaguchi-Kabata, Y., Nakazono1, K., Takahashi, A., Saito, S., Hosono, N., Kubo, M., Nakamura, Y. & Kamatani, N. (2008) Japanese population structure, based on SNP genotypes from 7003 individuals compared to other ethnic groups: Effects on population-based association studies. Am J Hum Genet 83, 445-456.
-
(2008)
Am J Hum Genet
, vol.83
, pp. 445-456
-
-
Yamaguchi-Kabata, Y.1
Nakazono1, K.2
Takahashi, A.3
Saito, S.4
Hosono, N.5
Kubo, M.6
Nakamura, Y.7
Kamatani, N.8
|