-
1
-
-
0017122896
-
Degradation of purines and pyrimidines by microorganisms
-
Vogels GD, Van der Drift C. Degradation of purines and pyrimidines by microorganisms. Bacteriol Rev 1976; 40: 403-468.
-
(1976)
Bacteriol Rev
, vol.40
, pp. 403-468
-
-
Vogels, G.D.1
Van der Drift, C.2
-
2
-
-
0014034942
-
Epidemiology of gout and hyperuricemia. A long-term population study
-
Hall AP, Barry PE, Dawber TR, McNamara PM. Epidemiology of gout and hyperuricemia. A long-term population study. Am J Med 1967; 42: 27-37.
-
(1967)
Am J Med
, vol.42
, pp. 27-37
-
-
Hall, A.P.1
Barry, P.E.2
Dawber, T.R.3
McNamara, P.M.4
-
3
-
-
0019787519
-
Uric acid provides an antioxidant defense in humans against oxidant- and radical-caused aging and cancer: a hypothesis
-
Ames BN, Cathcart R, Schwiers E, Hochstein P. Uric acid provides an antioxidant defense in humans against oxidant- and radical-caused aging and cancer: a hypothesis. Proc Natl Acad Sci USA 1981; 78: 6858-6862.
-
(1981)
Proc Natl Acad Sci USA
, vol.78
, pp. 6858-6862
-
-
Ames, B.N.1
Cathcart, R.2
Schwiers, E.3
Hochstein, P.4
-
4
-
-
3042692195
-
Isolation of a chromosomal region of Klebsiella pneumoniae associated with allantoin metabolism and liver infection
-
Chou HC, Lee CZ, Ma LC, Fang CT, Chang SC, Wang JT. Isolation of a chromosomal region of Klebsiella pneumoniae associated with allantoin metabolism and liver infection. Infect Immun 2004; 72: 3783-3792.
-
(2004)
Infect Immun
, vol.72
, pp. 3783-3792
-
-
Chou, H.C.1
Lee, C.Z.2
Ma, L.C.3
Fang, C.T.4
Chang, S.C.5
Wang, J.T.6
-
5
-
-
33646580070
-
Completing the uric acid degradation pathway through phylogenetic comparison of whole genomes
-
Ramazzina I, Folli C, Secchi A, Berni R, Percudani R. Completing the uric acid degradation pathway through phylogenetic comparison of whole genomes. Nat Chem Biol 2006; 2: 144-148.
-
(2006)
Nat Chem Biol
, vol.2
, pp. 144-148
-
-
Ramazzina, I.1
Folli, C.2
Secchi, A.3
Berni, R.4
Percudani, R.5
-
6
-
-
4644275038
-
Serum uric acid-lowering therapies: where are we heading in management of hyperuricemia and the potential role of uricase
-
Bomalaski JS, Clark MA. Serum uric acid-lowering therapies: where are we heading in management of hyperuricemia and the potential role of uricase. Curr Rheumatol Rep 2004; 6: 240-247.
-
(2004)
Curr Rheumatol Rep
, vol.6
, pp. 240-247
-
-
Bomalaski, J.S.1
Clark, M.A.2
-
7
-
-
77950398327
-
Ureide catabolism in Arabidopsis thaliana and Escherichia coli
-
Werner AK, Romeis T, Witte CP. Ureide catabolism in Arabidopsis thaliana and Escherichia coli. Nature Chem Biol 2010; 6: 19-21.
-
(2010)
Nature Chem Biol
, vol.6
, pp. 19-21
-
-
Werner, A.K.1
Romeis, T.2
Witte, C.P.3
-
8
-
-
0009823739
-
Streptococcus allantoicus and the fermentation of allantoin
-
Barker HA. Streptococcus allantoicus and the fermentation of allantoin. J Bacteriol 1943; 46: 251-259.
-
(1943)
J Bacteriol
, vol.46
, pp. 251-259
-
-
Barker, H.A.1
-
10
-
-
0344879063
-
Induction of carbamyl-P specific oxamate transcarbamylase by parabanic acid in a Streptococcus
-
Tigier H, Grisolia S. Induction of carbamyl-P specific oxamate transcarbamylase by parabanic acid in a Streptococcus. Biochem Biophys Res Commun 1965; 19: 209-214.
-
(1965)
Biochem Biophys Res Commun
, vol.19
, pp. 209-214
-
-
Tigier, H.1
Grisolia, S.2
-
14
-
-
36949064964
-
Phosphate-dependent degradation of urea
-
Valentine RC, Wolfe RS. Phosphate-dependent degradation of urea. Nature 1961; 191: 925-926.
-
(1961)
Nature
, vol.191
, pp. 925-926
-
-
Valentine, R.C.1
Wolfe, R.S.2
-
15
-
-
0033797245
-
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage
-
Xi H, Schneider BL, Reitzer L. Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage. J Bacteriol 2000; 182: 5332-5341.
-
(2000)
J Bacteriol
, vol.182
, pp. 5332-5341
-
-
Xi, H.1
Schneider, B.L.2
Reitzer, L.3
-
16
-
-
0032762639
-
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli
-
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J. Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli. J Bacteriol 1999; 181: 7479-7484.
-
(1999)
J Bacteriol
, vol.181
, pp. 7479-7484
-
-
Cusa, E.1
Obradors, N.2
Baldoma, L.3
Badia, J.4
Aguilar, J.5
-
17
-
-
0036923450
-
Regulation of the Escherichia coli allantoin regulon: coordinated function of the repressor AllR and the activator AllS
-
Rintoul MR, Cusa E, Baldoma L, Badia J, Reitzer L, Aguilar J. Regulation of the Escherichia coli allantoin regulon: coordinated function of the repressor AllR and the activator AllS. J Mol Biol 2002; 324: 599-610.
-
(2002)
J Mol Biol
, vol.324
, pp. 599-610
-
-
Rintoul, M.R.1
Cusa, E.2
Baldoma, L.3
Badia, J.4
Reitzer, L.5
Aguilar, J.6
-
18
-
-
33646070547
-
Structural and biochemical study of effector molecule recognition by the E. coli glyoxylate and allantoin utilization regulatory protein AllR
-
Walker JR, Altamentova S, Ezersky A, Lorca G, Skarina T, Kudritska M, Ball LJ, Bochkarev A, Savchenko A. Structural and biochemical study of effector molecule recognition by the E. coli glyoxylate and allantoin utilization regulatory protein AllR. J Mol Biol 2006; 358: 810-828.
-
(2006)
J Mol Biol
, vol.358
, pp. 810-828
-
-
Walker, J.R.1
Altamentova, S.2
Ezersky, A.3
Lorca, G.4
Skarina, T.5
Kudritska, M.6
Ball, L.J.7
Bochkarev, A.8
Savchenko, A.9
-
19
-
-
33750267965
-
ORENZA: a web resource for studying ORphan ENZyme activities
-
Lespinet O, Labedan B. ORENZA: a web resource for studying ORphan ENZyme activities. BMC Bioinform 2006; 7: 436.
-
(2006)
BMC Bioinform
, vol.7
, pp. 436
-
-
Lespinet, O.1
Labedan, B.2
-
20
-
-
33746018654
-
Structure and catalytic mechanism of a novel N-succinyl-L-ornithine transcarbamylase in arginine biosynthesis of Bacteroides fragilis
-
Shi D, Morizono H, Cabrera-Luque J, Yu X, Roth L, Malamy MH, Allewell NM, Tuchman M. Structure and catalytic mechanism of a novel N-succinyl-L-ornithine transcarbamylase in arginine biosynthesis of Bacteroides fragilis. J Biol Chem 2006; 281: 20623-20631.
-
(2006)
J Biol Chem
, vol.281
, pp. 20623-20631
-
-
Shi, D.1
Morizono, H.2
Cabrera-Luque, J.3
Yu, X.4
Roth, L.5
Malamy, M.H.6
Allewell, N.M.7
Tuchman, M.8
-
21
-
-
34547611288
-
A single mutation in the active site swaps the substrate specificity of N-acetyl-L-ornithine transcarbamylase and N-succinyl-L-ornithine transcarbamylase
-
Shi D, Yu X, Cabrera-Luque J, Chen TY, Roth L, Morizono H, Allewell NM, Tuchman M. A single mutation in the active site swaps the substrate specificity of N-acetyl-L-ornithine transcarbamylase and N-succinyl-L-ornithine transcarbamylase. Protein Sci 2007; 16: 1689-1699.
-
(2007)
Protein Sci
, vol.16
, pp. 1689-1699
-
-
Shi, D.1
Yu, X.2
Cabrera-Luque, J.3
Chen, T.Y.4
Roth, L.5
Morizono, H.6
Allewell, N.M.7
Tuchman, M.8
-
22
-
-
33744491009
-
Expression, purification, crystallization and preliminary X-ray crystallographic studies of a novel acetylcitrulline deacetylase from Xanthomonas campestris
-
Shi D, Yu X, Roth L, Morizono H, Hathout Y, Allewell NM, Tuchman M. Expression, purification, crystallization and preliminary X-ray crystallographic studies of a novel acetylcitrulline deacetylase from Xanthomonas campestris. Acta Crystallogr Sect F Struct Biol Cryst Commun 2005; 61: 676-679.
-
(2005)
Acta Crystallogr Sect F Struct Biol Cryst Commun
, vol.61
, pp. 676-679
-
-
Shi, D.1
Yu, X.2
Roth, L.3
Morizono, H.4
Hathout, Y.5
Allewell, N.M.6
Tuchman, M.7
-
23
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976; 72: 248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
24
-
-
33645958863
-
Acetylornithine transcarbamylase: a novel enzyme in arginine biosynthesis
-
Morizono H, Cabrera-Luque J, Shi D, Gallegos R, Yamaguchi S, Yu X, Allewell NM, Malamy MH, Tuchman M. Acetylornithine transcarbamylase: a novel enzyme in arginine biosynthesis. J Bacteriol 2006; 188: 2974-2982.
-
(2006)
J Bacteriol
, vol.188
, pp. 2974-2982
-
-
Morizono, H.1
Cabrera-Luque, J.2
Shi, D.3
Gallegos, R.4
Yamaguchi, S.5
Yu, X.6
Allewell, N.M.7
Malamy, M.H.8
Tuchman, M.9
-
25
-
-
0019799867
-
An improved colorimetric assay for aspartate and ornithine transcarbamylases
-
Pastra-Landis SC, Foote J, Kantrowitz ER. An improved colorimetric assay for aspartate and ornithine transcarbamylases. Anal Biochem 1981; 118: 358-363.
-
(1981)
Anal Biochem
, vol.118
, pp. 358-363
-
-
Pastra-Landis, S.C.1
Foote, J.2
Kantrowitz, E.R.3
-
26
-
-
0031043291
-
Expression, purification and kinetic characterization of wild-type human ornithine transcarbamylase and a recurrent mutant that produces 'late onset' hyperammonaemia
-
Morizono H, Tuchman M, Rajagopal BS, McCann MT, Listrom CD, Yuan X, Venugopal D, Barany G, Allewell NM. Expression, purification and kinetic characterization of wild-type human ornithine transcarbamylase and a recurrent mutant that produces 'late onset' hyperammonaemia. Biochem J 1997; 322: 625-631.
-
(1997)
Biochem J
, vol.322
, pp. 625-631
-
-
Morizono, H.1
Tuchman, M.2
Rajagopal, B.S.3
McCann, M.T.4
Listrom, C.D.5
Yuan, X.6
Venugopal, D.7
Barany, G.8
Allewell, N.M.9
-
27
-
-
0032518449
-
Kinetic studies of allosteric catabolic ornithine carbamoyltransferase from Pseudomonas aeruginosa
-
Sainz G, Tricot C, Foray MF, Marion D, Dideberg O, Stalon V. Kinetic studies of allosteric catabolic ornithine carbamoyltransferase from Pseudomonas aeruginosa. Eur J Biochem 1998; 251: 528-533.
-
(1998)
Eur J Biochem
, vol.251
, pp. 528-533
-
-
Sainz, G.1
Tricot, C.2
Foray, M.F.3
Marion, D.4
Dideberg, O.5
Stalon, V.6
-
28
-
-
43749094344
-
The crystal structure of N-acetyl-L-glutamate synthase from Neisseria gonorrhoeae provides insights into mechanisms of catalysis and regulation
-
Shi D, Sagar V, Jin Z, Yu X, Caldovic L, Morizono H, Allewell NM, Tuchman M. The crystal structure of N-acetyl-L-glutamate synthase from Neisseria gonorrhoeae provides insights into mechanisms of catalysis and regulation. J Biol Chem 2008; 283: 7176-7184.
-
(2008)
J Biol Chem
, vol.283
, pp. 7176-7184
-
-
Shi, D.1
Sagar, V.2
Jin, Z.3
Yu, X.4
Caldovic, L.5
Morizono, H.6
Allewell, N.M.7
Tuchman, M.8
-
30
-
-
0035788107
-
Pushing the boundaries of molecular replacement with maximum likelihood
-
Read RJ. Pushing the boundaries of molecular replacement with maximum likelihood. Acta Crystallogr 2001; 57: 1373-1382.
-
(2001)
Acta Crystallogr
, vol.57
, pp. 1373-1382
-
-
Read, R.J.1
-
32
-
-
23844492576
-
Auto-rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment
-
Panjikar S, Parthasarathy V, Lamzin VS, Weiss MS, Tucker PA. Auto-rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment. Acta Crystallogr 2005; 61: 449-457.
-
(2005)
Acta Crystallogr
, vol.61
, pp. 449-457
-
-
Panjikar, S.1
Parthasarathy, V.2
Lamzin, V.S.3
Weiss, M.S.4
Tucker, P.A.5
-
33
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
Collaborative Computational Project, Number 4
-
Collaborative Computational Project, Number 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr 1994; 50: 760-763.
-
(1994)
Acta Crystallogr
, vol.50
, pp. 760-763
-
-
-
34
-
-
37549039510
-
A short history of SHELX
-
Sheldrick GM. A short history of SHELX. Acta Crystallogr A 2008; 64: 112-122.
-
(2008)
Acta Crystallogr A
, vol.64
, pp. 112-122
-
-
Sheldrick, G.M.1
-
35
-
-
3442875865
-
ABS: a program to determine absolute configuration and evaluate anomalous scatterer substructure
-
Hao Q. ABS: a program to determine absolute configuration and evaluate anomalous scatterer substructure. J Appl Crystallogr 2004; 37: 498-499.
-
(2004)
J Appl Crystallogr
, vol.37
, pp. 498-499
-
-
Hao, Q.1
-
36
-
-
2142750049
-
Breaking good resolutions with ARP/wARP
-
Morris RJ, Zwart PH, Cohen S, Fernandez FJ, Kakaris M, Kirillova O, Vonrhein C, Perrakis A, Lamzin VS. Breaking good resolutions with ARP/wARP. J Synchrotron Radiat 2004; 11: 56-59.
-
(2004)
J Synchrotron Radiat
, vol.11
, pp. 56-59
-
-
Morris, R.J.1
Zwart, P.H.2
Cohen, S.3
Fernandez, F.J.4
Kakaris, M.5
Kirillova, O.6
Vonrhein, C.7
Perrakis, A.8
Lamzin, V.S.9
-
37
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
Perrakis A, Morris R, Lamzin VS. Automated protein model building combined with iterative structure refinement. Nat Struct Biol 1999; 6: 458-463.
-
(1999)
Nat Struct Biol
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
38
-
-
13244281317
-
Coot: model-building tools for molecular graphics
-
Emsley P, Cowtan K. Coot: model-building tools for molecular graphics. Acta Crystallogr 2004; 60: 2126-2132.
-
(2004)
Acta Crystallogr
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
39
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr 2010; 66: 213-221.
-
(2010)
Acta Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
41
-
-
0030802657
-
Crystal structure at 2.8 A resolution of anabolic ornithine transcarbamylase from Escherichia coli
-
Jin L, Seaton BA, Head JF. Crystal structure at 2.8 A resolution of anabolic ornithine transcarbamylase from Escherichia coli. Nat Struct Biol 1997; 4: 622-625.
-
(1997)
Nat Struct Biol
, vol.4
, pp. 622-625
-
-
Jin, L.1
Seaton, B.A.2
Head, J.F.3
-
42
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel E, Henrick K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr 2004; 60: 2256-2268.
-
(2004)
Acta Crystallogr
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
45
-
-
0034710671
-
A deeply knotted protein structure and how it might fold
-
Taylor WR. A deeply knotted protein structure and how it might fold. Nature 2000; 406: 916-919.
-
(2000)
Nature
, vol.406
, pp. 916-919
-
-
Taylor, W.R.1
-
46
-
-
0037413604
-
Protein knots: a tangled problem
-
Taylor WR, Lin K. Protein knots: a tangled problem. Nature 2003; 421: 25.
-
(2003)
Nature
, vol.421
, pp. 25
-
-
Taylor, W.R.1
Lin, K.2
-
48
-
-
33646904782
-
Statistics of knots, geometry of conformations, and evolution of proteins
-
Lua RC, Grosberg AY. Statistics of knots, geometry of conformations, and evolution of proteins. PLoS Comput Biol 2006; 2: e45.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Lua, R.C.1
Grosberg, A.Y.2
-
49
-
-
78049235694
-
Knotted vs. unknotted proteins: evidence of knot-promoting loops
-
Potestio R, Micheletti C, Orland H. Knotted vs. unknotted proteins: evidence of knot-promoting loops. PLoS Comput Biol 2010; 6: e1000864.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Potestio, R.1
Micheletti, C.2
Orland, H.3
-
50
-
-
11044231848
-
The difficulty of annotating genes: the case of putrescine carbamoyltransferase
-
Naumoff DG, Xu Y, Stalon V, Glansdorff N, Labedan B. The difficulty of annotating genes: the case of putrescine carbamoyltransferase. Microbiology 2004; 150: 3908-3911.
-
(2004)
Microbiology
, vol.150
, pp. 3908-3911
-
-
Naumoff, D.G.1
Xu, Y.2
Stalon, V.3
Glansdorff, N.4
Labedan, B.5
-
51
-
-
9144265895
-
Retrieving sequences of enzymes experimentally characterized but erroneously annotated: the case of the putrescine carbamoyltransferase
-
Naumoff DG, Xu Y, Glansdorff N, Labedan B. Retrieving sequences of enzymes experimentally characterized but erroneously annotated: the case of the putrescine carbamoyltransferase. BMC Genomics 2004; 5: 52.
-
(2004)
BMC Genomics
, vol.5
, pp. 52
-
-
Naumoff, D.G.1
Xu, Y.2
Glansdorff, N.3
Labedan, B.4
-
53
-
-
0036017388
-
Evolutionary rate heterogeneity in proteins with long disordered regions
-
Brown CJ, Takayama S, Campen AM, Vise P, Marshall TW, Oldfield CJ, Williams CJ, Dunker AK. Evolutionary rate heterogeneity in proteins with long disordered regions. J Mol Evol 2002; 55: 104-110.
-
(2002)
J Mol Evol
, vol.55
, pp. 104-110
-
-
Brown, C.J.1
Takayama, S.2
Campen, A.M.3
Vise, P.4
Marshall, T.W.5
Oldfield, C.J.6
Williams, C.J.7
Dunker, A.K.8
-
54
-
-
1542286881
-
Analysis of an agmatine deiminase gene cluster in Streptococcus mutans UA159
-
Griswold AR, Chen YY, Burne RA. Analysis of an agmatine deiminase gene cluster in Streptococcus mutans UA159. J Bacteriol 2004; 186: 1902-1904.
-
(2004)
J Bacteriol
, vol.186
, pp. 1902-1904
-
-
Griswold, A.R.1
Chen, Y.Y.2
Burne, R.A.3
-
55
-
-
0035868405
-
Human ornithine transcarbamylase: crystallographic insights into substrate recognition and conformational changes
-
Shi D, Morizono H, Yu X, Tong L, Allewell NM, Tuchman M. Human ornithine transcarbamylase: crystallographic insights into substrate recognition and conformational changes. Biochem J 2001; 354: 501-509.
-
(2001)
Biochem J
, vol.354
, pp. 501-509
-
-
Shi, D.1
Morizono, H.2
Yu, X.3
Tong, L.4
Allewell, N.M.5
Tuchman, M.6
-
56
-
-
21144434991
-
Structural basis for ordered substrate binding and cooperativity in aspartate transcarbamoylase
-
Wang J, Stieglitz KA, Cardia JP, Kantrowitz ER. Structural basis for ordered substrate binding and cooperativity in aspartate transcarbamoylase. Proc Natl Acad Sci USA 2005; 102: 8881-8886.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 8881-8886
-
-
Wang, J.1
Stieglitz, K.A.2
Cardia, J.P.3
Kantrowitz, E.R.4
-
57
-
-
42449092465
-
Crystal structure of the catalytic trimer of Methanococcus jannaschii aspartate transcarbamoylase
-
Vitali J, Colaneri MJ, Kantrowitz E. Crystal structure of the catalytic trimer of Methanococcus jannaschii aspartate transcarbamoylase. Proteins 2008; 71: 1324-1334.
-
(2008)
Proteins
, vol.71
, pp. 1324-1334
-
-
Vitali, J.1
Colaneri, M.J.2
Kantrowitz, E.3
|