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Volumn 53, Issue 1, 2011, Pages 44-49

Evaluation of the impact of DNA extraction methods on BAC bacterial community composition measured by denaturing gradient gel electrophoresis

Author keywords

Bacterial community; Biological activated carbon; Denaturing gradient gel electrophoresis; DNA extraction

Indexed keywords

ACTIVATED CARBON; BACTERIOLOGY; DNA; ELECTROPHORESIS; EXTRACTION;

EID: 79958769871     PISSN: 02668254     EISSN: 1472765X     Source Type: Journal    
DOI: 10.1111/j.1472-765X.2011.03064.x     Document Type: Article
Times cited : (13)

References (22)
  • 1
    • 33847420155 scopus 로고    scopus 로고
    • Adsorption, desorption and bioregeneration in the treatment of 2-chlorophenol with activated carbon
    • Aktaş, Ö. and Çeçen, F. (2007) Adsorption, desorption and bioregeneration in the treatment of 2-chlorophenol with activated carbon. J Hazard Mater 141, 769-777.
    • (2007) J Hazard Mater , vol.141 , pp. 769-777
    • Aktaş, O.1    Çeçen, F.2
  • 3
    • 36348995417 scopus 로고    scopus 로고
    • DNA extraction method affects microbial community profiles from soils and sediment
    • Carrigg, C., Rice, O., Kavanagh, S., Collins, G. and O'Flaherty, V. (2007) DNA extraction method affects microbial community profiles from soils and sediment. Appl Microbiol Biotechnol 77, 955-964.
    • (2007) Appl Microbiol Biotechnol , vol.77 , pp. 955-964
    • Carrigg, C.1    Rice, O.2    Kavanagh, S.3    Collins, G.4    O'Flaherty, V.5
  • 6
    • 67650266240 scopus 로고    scopus 로고
    • Analysis of bacteria communities in an up-flow fixed-bed (UFB) bioreactor for treating sulfide in hydrocarbon wastewater
    • Ji, G., Liao, B., Tao, H. and Lei, Z. (2009) Analysis of bacteria communities in an up-flow fixed-bed (UFB) bioreactor for treating sulfide in hydrocarbon wastewater. Bioresour Technol 100, 5056-5062.
    • (2009) Bioresour Technol , vol.100 , pp. 5056-5062
    • Ji, G.1    Liao, B.2    Tao, H.3    Lei, Z.4
  • 7
    • 0032718452 scopus 로고    scopus 로고
    • Comparison of different methods for the isolation and purification of total community DNA from soil
    • Krsek, M. and Wellington, E.M.H. (1999) Comparison of different methods for the isolation and purification of total community DNA from soil. J Microbiol Methods 39, 1-16.
    • (1999) J Microbiol Methods , vol.39 , pp. 1-16
    • Krsek, M.1    Wellington, E.M.H.2
  • 8
    • 36049023747 scopus 로고    scopus 로고
    • Biosorption of Cr(VI) using a bacterial biofilm supported on granular activated carbon and on zeolite
    • Lameiras, S., Quintelas, C. and Tavares, T. (2008) Biosorption of Cr(VI) using a bacterial biofilm supported on granular activated carbon and on zeolite. Bioresour Technol 99, 801-806.
    • (2008) Bioresour Technol , vol.99 , pp. 801-806
    • Lameiras, S.1    Quintelas, C.2    Tavares, T.3
  • 9
    • 5344253948 scopus 로고    scopus 로고
    • Impact of DNA extraction method on bacterial community composition measured by denaturing gradient gel electrophoresis
    • de Lipthay, J.R., Enzinger, C., Johnsen, K., Aamand, J. and Sørensen, S.J. (2004) Impact of DNA extraction method on bacterial community composition measured by denaturing gradient gel electrophoresis. Soil Biol Biochem 36, 1607-1614.
    • (2004) Soil Biol Biochem , vol.36 , pp. 1607-1614
    • de Lipthay, J.R.1    Enzinger, C.2    Johnsen, K.3    Aamand, J.4    Sørensen, S.J.5
  • 10
    • 66749097256 scopus 로고    scopus 로고
    • Simple DNA extraction protocol for a 16S rDNA study of bacterial diversity in tropical landfarm soil used for bioremediation of oil waste
    • Maciel, B.M., Santos, A.C.F., Dias, J.C.T., Vidal, R.O., Dias, R.J.C., Gross, E., Cascardo, J.C.M. and Rezende, R.P. (2009) Simple DNA extraction protocol for a 16S rDNA study of bacterial diversity in tropical landfarm soil used for bioremediation of oil waste. Genet Mol Res 8, 375-388.
    • (2009) Genet Mol Res , vol.8 , pp. 375-388
    • Maciel, B.M.1    Santos, A.C.F.2    Dias, J.C.T.3    Vidal, R.O.4    Dias, R.J.C.5    Gross, E.6    Cascardo, J.C.M.7    Rezende, R.P.8
  • 11
    • 4544292762 scopus 로고    scopus 로고
    • Optimisation and significance of ATP analysis for measuring active biomass in granular activated carbon filters used in water treatment
    • Magic-Knezev, A. and van der Kooij, D. (2004) Optimisation and significance of ATP analysis for measuring active biomass in granular activated carbon filters used in water treatment. Water Res 38, 3971-3979.
    • (2004) Water Res , vol.38 , pp. 3971-3979
    • Magic-Knezev, A.1    van der Kooij, D.2
  • 12
    • 0033152336 scopus 로고    scopus 로고
    • DGGE/TGGE a method for identifying genes from natural ecosystems
    • Muyzer, G. (1999) DGGE/TGGE a method for identifying genes from natural ecosystems. Curr Opin Microbiol 2, 317-322.
    • (1999) Curr Opin Microbiol , vol.2 , pp. 317-322
    • Muyzer, G.1
  • 13
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Muyzer, G. and Smalla, K. (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek 73, 127-141.
    • (1998) Antonie Van Leeuwenhoek , vol.73 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 14
    • 52049107425 scopus 로고    scopus 로고
    • Combination of adsorption and biodegradation processes for textile effluent treatment using a granular activated carbon-biofilm configured packed column system
    • Ong, S., Toorisaka, E., Hirata, M. and Hano, T. (2008) Combination of adsorption and biodegradation processes for textile effluent treatment using a granular activated carbon-biofilm configured packed column system. J Environ Sci (China) 20, 952-956.
    • (2008) J Environ Sci (China) , vol.20 , pp. 952-956
    • Ong, S.1    Toorisaka, E.2    Hirata, M.3    Hano, T.4
  • 15
    • 40949137837 scopus 로고    scopus 로고
    • Biosorption of Cr(VI) by three different bacterial species supported on granular activated carbon: a comparative study
    • Quintelas, C., Fernandes, B., Castro, J., Figueiredo, H. and Tavares, T. (2008) Biosorption of Cr(VI) by three different bacterial species supported on granular activated carbon: a comparative study. J Hazard Mater 153, 799-809.
    • (2008) J Hazard Mater , vol.153 , pp. 799-809
    • Quintelas, C.1    Fernandes, B.2    Castro, J.3    Figueiredo, H.4    Tavares, T.5
  • 16
    • 0028116158 scopus 로고
    • Rapid silver staining and recovery of PCR products separated on polyacrylamide gels
    • Sanguinetti, C.J., Dias Neto, E. and Simpson, A.J. (1994) Rapid silver staining and recovery of PCR products separated on polyacrylamide gels. BioTechniques 17, 914-921.
    • (1994) BioTechniques , vol.17 , pp. 914-921
    • Sanguinetti, C.J.1    Dias Neto, E.2    Simpson, A.J.3
  • 17
    • 58849143055 scopus 로고    scopus 로고
    • Extraction of DNA from soil for analysis of bacterial diversity in transgenic and nontransgenic papaya sites
    • Sheu, C., Wu, C.Y., Chen, S.C. and Lo, C.C. (2008) Extraction of DNA from soil for analysis of bacterial diversity in transgenic and nontransgenic papaya sites. J Agric Food Chem 56, 11969-11975.
    • (2008) J Agric Food Chem , vol.56 , pp. 11969-11975
    • Sheu, C.1    Wu, C.Y.2    Chen, S.C.3    Lo, C.C.4
  • 19
    • 34548695899 scopus 로고    scopus 로고
    • Discriminating and assessing adsorption and biodegradation removal mechanisms during granular activated carbon filtration of microcystin toxins
    • Wang, H., Ho, L., Lewis, D.M., Brookes, J.D. and Newcombe, G. (2007) Discriminating and assessing adsorption and biodegradation removal mechanisms during granular activated carbon filtration of microcystin toxins. Water Res 41, 4262-4270.
    • (2007) Water Res , vol.41 , pp. 4262-4270
    • Wang, H.1    Ho, L.2    Lewis, D.M.3    Brookes, J.D.4    Newcombe, G.5
  • 20
    • 33847289745 scopus 로고    scopus 로고
    • Comparison of methods for total community DNA extraction and purification from compost
    • Yang, Z.H., Xiao, Y., Zeng, G.M., Xu, Z.Y. and Liu, Y.S. (2007) Comparison of methods for total community DNA extraction and purification from compost. Appl Microbiol Biotechnol 74, 918-925.
    • (2007) Appl Microbiol Biotechnol , vol.74 , pp. 918-925
    • Yang, Z.H.1    Xiao, Y.2    Zeng, G.M.3    Xu, Z.Y.4    Liu, Y.S.5
  • 21
    • 67650706683 scopus 로고    scopus 로고
    • DNA extraction from soil for molecular microbial community analysis
    • Zhao, Y., Zhou, Z.H., Li, W., Pan, Y.J. and Zhao, L.P. (2005) DNA extraction from soil for molecular microbial community analysis. J Agro-Environ Sci 24, 854-860.
    • (2005) J Agro-Environ Sci , vol.24 , pp. 854-860
    • Zhao, Y.1    Zhou, Z.H.2    Li, W.3    Pan, Y.J.4    Zhao, L.P.5
  • 22
    • 0030070838 scopus 로고    scopus 로고
    • DNA recovery from soils of diverse composition
    • Zhou, J., Bruns, M.A. and Tiedje, J.M. (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62, 316-322.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 316-322
    • Zhou, J.1    Bruns, M.A.2    Tiedje, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.