-
3
-
-
70049089977
-
-
D. Hardy, "NAMD-lite," http//www.ks.uiuc.edu/Development/ MDTools/namdlite/, University of Illinois at Urbana-Champaign, 2007.
-
(2007)
NAMD-lite
-
-
Hardy, D.1
-
5
-
-
35948963714
-
Accelerating molecular modeling applications with graphics processors
-
DOI 10.1002/jcc.20829
-
J. Stone, J. Phillips, P. Freddolino, D. Hardy, L. Trabuco, and K. Schulten, "Accelerating molecular modeling applications with graphics processors," J. Computational Chemistry, vol. 28, pp. 2618-2640, 2007. (Pubitemid 350074136)
-
(2007)
Journal of Computational Chemistry
, vol.28
, Issue.16
, pp. 2618-2640
-
-
Stone, J.E.1
Phillips, J.C.2
Freddolino, P.L.3
Hardy, D.J.4
Trabuco, L.G.5
Schulten, K.6
-
6
-
-
67650135820
-
Efficient table lookup without inverse square roots for calculation of pair wise atomic interactions in classical simulations
-
L. Nilsson, "Efficient table lookup without inverse square roots for calculation of pair wise atomic interactions in classical simulations," J. Computational Chemistry, vol. 30, pp. 1490-1498, 2009.
-
(2009)
J. Computational Chemistry
, vol.30
, pp. 1490-1498
-
-
Nilsson, L.1
-
7
-
-
57749191489
-
High-througput pair-wise point interactions in anton, a specialized machine for molecular dynamics simulation
-
R. Larson, J. Salmon, M. Deneroff, C. Young, J. Grossman, Y. Shan, J. Klepseis, and D. Shaw, "High-througput pair-wise point interactions in Anton, a specialized machine for molecular dynamics simulation," in Proc. High Performance Computer Architecture, 2008, pp. 331-342.
-
(2008)
Proc. High Performance Computer Architecture
, pp. 331-342
-
-
Larson, R.1
Salmon, J.2
Deneroff, M.3
Young, C.4
Grossman, J.5
Shan, Y.6
Klepseis, J.7
Shaw, D.8
-
8
-
-
36749115010
-
The performance implications of thread management alternatives for shared-memory multiprocessors
-
T. Andrea, W. Swope, and H. Anderson, "The performance implications of thread management alternatives for shared-memory multiprocessors," J. of Chemical Physics, vol. 79, no. 9, pp. 4576-4584, 1983.
-
(1983)
J. of Chemical Physics
, vol.79
, Issue.9
, pp. 4576-4584
-
-
Andrea, T.1
Swope, W.2
Anderson, H.3
-
9
-
-
35348886062
-
Anton, a special-purpose machine for molecular dynamics simulation
-
DOI 10.1145/1250662.1250664, ISCA'07: 34th Annual International Symposium on Computer Architecture, Conference Proceedings
-
Shaw, D.E., et al., "Anton, a special-purpose machine for molecular dynamics simulation," in Proc. International Symp. on Computer Architecture, 2007, pp. 1-12. (Pubitemid 47582086)
-
(2007)
Proceedings - International Symposium on Computer Architecture
, pp. 1-12
-
-
Shaw, D.E.1
Deneroff, M.M.2
Dror, R.O.3
Kuskin, J.S.4
Larson, R.H.5
Salmon, J.K.6
Young, C.7
Batson, B.8
Bowers, K.J.9
Chao, J.C.10
Eastwood, M.P.11
Gagliardo, J.12
Grossman, J.P.13
Ho, C.R.14
Ierardi, D.J.15
Kolossvary, I.16
Klepeis, J.L.17
Layman, T.18
McLeavey, C.19
Moraes, M.A.20
Mueller, R.21
Priest, E.C.22
Shan, Y.23
Spengler, J.24
Theobald, M.25
Towles, B.26
Wang, S.C.27
more..
-
10
-
-
18144377695
-
Monitoring energy drift with shadow Hamiltonians
-
DOI 10.1016/j.jcp.2004.12.009, PII S0021999104005212
-
R. Engle, R. Skeel, and M. Drees, "Monitoring Energy Drift with Shadow Hamiltonians," J. Computational Physics, vol. 206, pp. 432-452, 2005. (Pubitemid 40621269)
-
(2005)
Journal of Computational Physics
, vol.206
, Issue.2
, pp. 432-452
-
-
Engle, R.D.1
Skeel, R.D.2
Drees, M.3
-
11
-
-
22944460220
-
Gaussian split ewald: A fast ewald mesh method for molecular simulation
-
Y. Shan, J. Klepeis, M. Eastwood, R. Dror, and D. Shaw, "Gaussian split Ewald: A fast Ewald mesh method for molecular simulation," J. Chemical Physics, vol. 122, no. 4, 2005.
-
(2005)
J. Chemical Physics
, vol.122
, Issue.4
-
-
Shan, Y.1
Klepeis, J.2
Eastwood, M.3
Dror, R.4
Shaw, D.5
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