메뉴 건너뛰기




Volumn 2, Issue 3, 2011, Pages 130-134

The role of E. coli Nus-factors in transcription regulation and transcription: Translation coupling: From structure to mechanism

Author keywords

Elongation; Initiation; Nus factor; RNA polymerase; Termination; Transcription

Indexed keywords

BIOLOGICAL FACTOR; NUS PROTEIN; NUSA PROTEIN; NUSB PROTEIN; NUSE PROTEIN; NUSG PROTEIN; RNA POLYMERASE; SINGLE STRANDED DNA; SINGLE STRANDED RNA; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 79958719704     PISSN: 21541264     EISSN: 21541272     Source Type: Journal    
DOI: 10.4161/trns.2.3.15671     Document Type: Article
Times cited : (20)

References (37)
  • 1
    • 0015985734 scopus 로고
    • Genetic characterization of a bacterial locus involved in the activity of the N function of phage lambda
    • Friedman DI, Baron LS. Genetic characterization of a bacterial locus involved in the activity of the N function of phage lambda. Virology 1974; 58:141-148.
    • (1974) Virology , vol.58 , pp. 141-148
    • Friedman, D.I.1    Baron, L.S.2
  • 2
    • 0036668461 scopus 로고    scopus 로고
    • Transcription termination and anti-termination in E. coli
    • Nudler E, Gottesman ME. Transcription termination and anti-termination in E. coli. Genes Cells 2002; 7:755-768.
    • (2002) Genes Cells , vol.7 , pp. 755-768
    • Nudler, E.1    Gottesman, M.E.2
  • 3
    • 77955550450 scopus 로고    scopus 로고
    • The NusA N-terminal domain is necessary and sufficient for enhancement of transcriptional pausing via interaction with the RNA exit channel of RNA polymerase
    • Ha KS, Toulokhonov I, Vassylyev DG, Landick R. The NusA N-terminal domain is necessary and sufficient for enhancement of transcriptional pausing via interaction with the RNA exit channel of RNA polymerase. J Mol Biol 2010.
    • (2010) J Mol Biol
    • Ha, K.S.1    Toulokhonov, I.2    Vassylyev, D.G.3    Landick, R.4
  • 4
    • 0034973423 scopus 로고    scopus 로고
    • An extended RNA binding surface through arrayed S1 and KH domains in transcription factor NusA
    • Worbs M, Bourenkov GP, Bartunik HD, Huber R, Wahl MC. An extended RNA binding surface through arrayed S1 and KH domains in transcription factor NusA. Mol Cell 2001; 7:1177-1189.
    • (2001) Mol Cell , vol.7 , pp. 1177-1189
    • Worbs, M.1    Bourenkov, G.P.2    Bartunik, H.D.3    Huber, R.4    Wahl, M.C.5
  • 6
    • 23644454655 scopus 로고    scopus 로고
    • The E. coli NusA carboxy-terminal domains are structurally similar and show specific RNAP- and\N interaction
    • Eisenmann A, Schwarz S, Prasch S, Schweimer K, Rösch P. The E. coli NusA carboxy-terminal domains are structurally similar and show specific RNAP- and\N interaction. Protein Sci 2005; 14:2018-2029.
    • (2005) Protein Sci , vol.14 , pp. 2018-2029
    • Eisenmann, A.1    Schwarz, S.2    Prasch, S.3    Schweimer, K.4    Rösch, P.5
  • 7
    • 33645653047 scopus 로고    scopus 로고
    • Interaction of the intrinsically unstructured phage lambda N protein with E. coli NusA
    • Prasch S, Schwarz S, Eisenmann A, Wöhrl BM, Schweimer K, Rösch P. Interaction of the intrinsically unstructured phage lambda N protein with E. coli NusA. Biochemistry 2006; 45:4542-4549.
    • (2006) Biochemistry , vol.45 , pp. 4542-4549
    • Prasch, S.1    Schwarz, S.2    Eisenmann, A.3    Wöhrl, B.M.4    Schweimer, K.5    Rösch, P.6
  • 8
    • 79958701958 scopus 로고    scopus 로고
    • NusA interaction with the a-subunit of E. coli RNA polymerase is via the UP-element site and releases autoinhibition
    • In press
    • Schweimer K, Prasch S, Santhanam SP, Bubunenko M, Gottesman ME, Rösch P. NusA interaction with the a-subunit of E. coli RNA polymerase is via the UP-element site and releases autoinhibition. Structure 2011; In press.
    • (2011) Structure
    • Schweimer, K.1    Prasch, S.2    Santhanam, S.P.3    Bubunenko, M.4    Gottesman, M.E.5    Rösch, P.6
  • 9
  • 10
    • 0033120034 scopus 로고    scopus 로고
    • The mechanism of intrinsic transcription termination
    • Gusarov I, Nudler E. The mechanism of intrinsic transcription termination. Mol Cell 1999; 3:495-504.
    • (1999) Mol Cell , vol.3 , pp. 495-504
    • Gusarov, I.1    Nudler, E.2
  • 11
    • 0024237544 scopus 로고
    • Effects of rifampicin resistant rpoB mutations on antiter mi nation and interaction with nusA in Escherichia coli
    • Jin DJ, Cashel M, Friedman DI, Nakamura Y, Walter WA, Gross CA. Effects of rifampicin resistant rpoB mutations on antiter mi nation and interaction with nusA in Escherichia coli. J Mol Biol 1988; 204:247-261.
    • (1988) J Mol Biol , vol.204 , pp. 247-261
    • Jin, D.J.1    Cashel, M.2    Friedman, D.I.3    Nakamura, Y.4    Walter, W.A.5    Gross, C.A.6
  • 13
    • 0035900642 scopus 로고    scopus 로고
    • Control of intrinsic transcription termination by N and NusA: The basic mechanisms
    • Gusarov I, Nudler E. Control of intrinsic transcription termination by N and NusA: The basic mechanisms. Cell 2001; 107:437-449.
    • (2001) Cell , vol.107 , pp. 437-449
    • Gusarov, I.1    Nudler, E.2
  • 15
    • 0026565484 scopus 로고
    • Direct interaction between two Escherichia coli transcription antiter-mination factors, NusB and ribosomal protein S10
    • Mason SW, Li J, Greenblatt J. Direct interaction between two Escherichia coli transcription antiter-mination factors, NusB and ribosomal protein S10. J Mol Biol 1992; 223:55-66.
    • (1992) J Mol Biol , vol.223 , pp. 55-66
    • Mason, S.W.1    Li, J.2    Greenblatt, J.3
  • 16
    • 75649100484 scopus 로고    scopus 로고
    • Fine tuning of the E. coli NusB:NusE complex affinity to BoxA RNA is required for processive anti-termination
    • Burmann BM, Luo X, Wahl MC, Rösch P, Gottesman ME. Fine tuning of the E. coli NusB:NusE complex affinity to BoxA RNA is required for processive anti-termination. Nucleic Acids Res 2010; 38:314-326.
    • (2010) Nucleic Acids Res , vol.38 , pp. 314-326
    • Burmann, B.M.1    Luo, X.2    Wahl, M.C.3    Rösch, P.4    Gottesman, M.E.5
  • 17
    • 57749115164 scopus 로고    scopus 로고
    • Structural and functional analysis of the E. coli NusB-S10 transcription antiter-mination complex
    • Luo X, Hsiao HH, Bubunenko M, Weber G, Court DL, Gottesman ME, et al. Structural and functional analysis of the E. coli NusB-S10 transcription antiter-mination complex. Mol Cell 2008; 32:791-802.
    • (2008) Mol Cell , vol.32 , pp. 791-802
    • Luo, X.1    Hsiao, H.H.2    Bubunenko, M.3    Weber, G.4    Court, D.L.5    Gottesman, M.E.6
  • 18
    • 27744509046 scopus 로고    scopus 로고
    • Assembly of an RNA-protein complex. Binding of NusB and NusE (S10) proteins to box A RNA nucleates the formation of the antitermination complex involved in controlling rRNA transcription in Escherichia coli
    • Greive SJ, Lins AF, von Hippel PH. Assembly of an RNA-protein complex. Binding of NusB and NusE (S10) proteins to box A RNA nucleates the formation of the antitermination complex involved in controlling rRNA transcription in Escherichia coli. J Biol Chem 2005; 280:36397-36408.
    • (2005) J Biol Chem , vol.280 , pp. 36397-36408
    • Greive, S.J.1    Lins, A.F.2    von Hippel, P.H.3
  • 19
    • 0004576260 scopus 로고    scopus 로고
    • Escherichia Coli and Salmonella: Cellular and Molecular Biology
    • In: Neidhardt FC, Curtiss R, Ingraham J, Lin ECC, Low KB, Eds, Washington DC, USA
    • Noller HF, Nomura M. Ribosomes. In: Neidhardt FC, Curtiss R, Ingraham J, Lin ECC, Low KB, Eds. Escherichia Coli and Salmonella: Cellular and Molecular Biology. Washington DC, USA: Am Soc Microbiol 1996; 1:167-186.
    • (1996) Am Soc Microbiol , vol.1 , pp. 167-186
    • Noller, H.F.1    Ribosomes, N.M.2
  • 22
    • 0032004953 scopus 로고    scopus 로고
    • Evidence that Spt4, Spt5 and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevi-siae
    • Hartzog GA, Wada T, Handa H, Winston F. Evidence that Spt4, Spt5 and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevi-siae. Genes Dev 1998; 12:357-369.
    • (1998) Genes Dev , vol.12 , pp. 357-369
    • Hartzog, G.A.1    Wada, T.2    Handa, H.3    Winston, F.4
  • 23
    • 79954470299 scopus 로고    scopus 로고
    • Domain interactions of the transcription-translation coupling factor E. coli NusG are intermo-lecular and transient
    • Burmann BM, Schweimer K, Scheckenhofer U, Rösch P. Domain interactions of the transcription-translation coupling factor E. coli NusG are intermo-lecular and transient. Biochem J 2011; 435:783-789.
    • (2011) Biochem J , vol.435 , pp. 783-789
    • Burmann, B.M.1    Schweimer, K.2    Scheckenhofer, U.3    Rösch, P.4
  • 24
    • 67650676737 scopus 로고    scopus 로고
    • Two structurally independent domains of E. coli NusG create regulatory plasticity via distinct interactions with RNA polymerase and regulators
    • Mooney RA, Schweimer K, Rösch P, Gottesman ME, Landick R. Two structurally independent domains of E. coli NusG create regulatory plasticity via distinct interactions with RNA polymerase and regulators. J Mol Biol 2009; 391:341-358.
    • (2009) J Mol Biol , vol.391 , pp. 341-358
    • Mooney, R.A.1    Schweimer, K.2    Rösch, P.3    Gottesman, M.E.4    Landick, R.5
  • 26
    • 0034691146 scopus 로고    scopus 로고
    • Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals
    • Artsimovitch I, Landick R. Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals. Proc Natl Acad Sci USA 2000; 97:7090-7095.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 7090-7095
    • Artsimovitch, I.1    Landick, R.2
  • 27
    • 77953082083 scopus 로고    scopus 로고
    • E. coli NusG inhibits backtracking and accelerates pause-free transcription by promoting forward translocation of RNA polymerase
    • Herbert KM, Zhou J, Mooney RA, Porta AL, Landick R, Block SM. E. coli NusG inhibits backtracking and accelerates pause-free transcription by promoting forward translocation of RNA polymerase. J Mol Biol 2010; 399:17-30.
    • (2010) J Mol Biol , vol.399 , pp. 17-30
    • Herbert, K.M.1    Zhou, J.2    Mooney, R.A.3    Porta, A.L.4    Landick, R.5    Block, S.M.6
  • 28
    • 0034026376 scopus 로고    scopus 로고
    • RNA polymerase structure-function: Insights into points of transcriptional regulation
    • Severinov K. RNA polymerase structure-function: Insights into points of transcriptional regulation. Curr Opin Microbiol 2000; 3:118-25.
    • (2000) Curr Opin Microbiol , vol.3 , pp. 118-125
    • Severinov, K.1
  • 29
    • 27644560257 scopus 로고    scopus 로고
    • Sigma and RNA polymerase: An on-again, off-again relationship
    • Mooney RA, Darst SA, Landick R. Sigma and RNA polymerase: An on-again, off-again relationship? Mol Cell 2005; 20:335-345.
    • (2005) Mol Cell , vol.20 , pp. 335-345
    • Mooney, R.A.1    Darst, S.A.2    Landick, R.3
  • 31
    • 74549191169 scopus 로고    scopus 로고
    • An allosteric mechanism of rho-dependent transcription termination
    • Epshtein V, Dutta D, Wade J, Nudler E. An allosteric mechanism of rho-dependent transcription termination. Nature 2010; 463:245-249.
    • (2010) Nature , vol.463 , pp. 245-249
    • Epshtein, V.1    Dutta, D.2    Wade, J.3    Nudler, E.4
  • 33
    • 66149123741 scopus 로고    scopus 로고
    • Direct detection of abortive RNA transcripts in vivo
    • Goldman SR, Ebright RH, Nickels BE. Direct detection of abortive RNA transcripts in vivo. Science 2009; 324:927-928.
    • (2009) Science , vol.324 , pp. 927-928
    • Goldman, S.R.1    Ebright, R.H.2    Nickels, B.E.3
  • 34
    • 77951589688 scopus 로고    scopus 로고
    • Cooperation between translating ribosomes and RNA polymerase in transcription elongation
    • Proshkin S, Rahmouni AR, Mironov A, Nudler E. Cooperation between translating ribosomes and RNA polymerase in transcription elongation. Science 2010; 328:504-508.
    • (2010) Science , vol.328 , pp. 504-508
    • Proshkin, S.1    Rahmouni, A.R.2    Mironov, A.3    Nudler, E.4
  • 37
    • 77951599654 scopus 로고    scopus 로고
    • Molecular biology. Syntheses that stay together
    • Roberts JW Molecular biology. Syntheses that stay together. Science 2010; 328:436-437
    • (2010) Science , vol.328 , pp. 436-437
    • Roberts, J.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.