메뉴 건너뛰기




Volumn 122, Issue 7, 2011, Pages 1265-1280

High-throughput genotyping of hop (Humulus lupulus L.) utilising diversity arrays technology (DArT)

Author keywords

[No Author keywords available]

Indexed keywords

ALTERNATE METHOD; COST-EFFECTIVE METHODS; COST-EFFICIENT; GENETIC DIVERSITY; GENETIC IDENTITY; GENETIC RELATIONSHIPS; GENETIC VARIATION; GENOTYPING; HIGH-THROUGHPUT; INFORMATION CONTENTS; MARKER-ASSISTED SELECTION; MOLECULAR MARKER; MOLECULAR METHODS; NORTH AMERICAN; POLYMORPHIC MARKERS;

EID: 79958712088     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-011-1529-4     Document Type: Article
Times cited : (30)

References (69)
  • 4
    • 0030466505 scopus 로고    scopus 로고
    • DNA typing of hops (Humulus lupulus) through application of RAPD and microsatellite marker sequences converted to sequence tagged sites (STS)
    • Brady JL, Scott NS, Thomas MR (1996) DNA typing of hops (Humulus lupulus) through application of RAPD and microsatellite marker sequences converted to sequence tagged sites (STS). Euphytica 91:277-284
    • (1996) Euphytica , vol.91 , pp. 277-284
    • Brady, J.L.1    Scott, N.S.2    Thomas, M.R.3
  • 5
    • 33747860314 scopus 로고    scopus 로고
    • Genetic mapping of hop (Humulus lupulus L.) applied to the detection of QTLs for alphaacid content
    • Cerenak A, Satovic Z, Javornik B (2006) Genetic mapping of hop (Humulus lupulus L.) applied to the detection of QTLs for alphaacid content. Genome 49:485-494
    • (2006) Genome , vol.49 , pp. 485-494
    • Cerenak, A.1    Satovic, Z.2    Javornik, B.3
  • 6
    • 9644287929 scopus 로고    scopus 로고
    • Assessment of genetic polymorphism in hop (Humulus lupulus L.) cultivars by ISSRPCR analysis
    • Danilova TV, Danilov SS, Karlov GI (2003) Assessment of genetic polymorphism in hop (Humulus lupulus L.) cultivars by ISSRPCR analysis. Russ J Genet 39:1252-1257
    • (2003) Russ J Genet , vol.39 , pp. 1252-1257
    • Danilova, T.V.1    Danilov, S.S.2    Karlov, G.I.3
  • 7
    • 0004135224 scopus 로고
    • Morphological complexes in hops (Humulus lupulus L.) with special reference to the American race
    • Davis E (1957) Morphological complexes in hops (Humulus lupulus L.) with special reference to the American race. Ann Mo Bot Gard 44:271-294
    • (1957) Ann Mo Bot Gard , vol.44 , pp. 271-294
    • Davis, E.1
  • 8
    • 77956597278 scopus 로고    scopus 로고
    • Accessed: 2009
    • Earl DA (2009) Structure Harvester v0.3. http://users.soe.ucsc.edu/*dearl/software/struct_harvest/. Accessed: 2009
    • (2009) Structure Harvester V0.3
    • Earl, D.A.1
  • 9
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study
    • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611-2620
    • (2005) Mol Ecol , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 10
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 12
    • 0345080170 scopus 로고
    • Gas-liquid chromatography, hop oils and variety identification
    • Green CP (1986) Gas-liquid chromatography, hop oils and variety identification. Engl Hops 6:10-11
    • (1986) Engl Hops , vol.6 , pp. 10-11
    • Green, C.P.1
  • 13
    • 2542487538 scopus 로고    scopus 로고
    • Isolation and characterization of polymorphic microsatellites for assessment of genetic variation of hops (Humulus lupulus L.)
    • Hadonou AM, Walden R, Darby P (2004) Isolation and characterization of polymorphic microsatellites for assessment of genetic variation of hops (Humulus lupulus L.). Mol Ecol Notes 4:280-282
    • (2004) Mol Ecol Notes , vol.4 , pp. 280-282
    • Hadonou, A.M.1    Walden, R.2    Darby, P.3
  • 14
    • 0031887134 scopus 로고    scopus 로고
    • Diversity of selected hop cultivars detected by fluorescent AFLPs
    • Hartl L, Seefelder S (1998) Diversity of selected hop cultivars detected by fluorescent AFLPs. Theor Appl Genet 96:112-116
    • (1998) Theor Appl Genet , vol.96 , pp. 112-116
    • Hartl, L.1    Seefelder, S.2
  • 16
    • 1542380285 scopus 로고    scopus 로고
    • Genetic diversity among world hop accessions grown in the USA
    • Henning JA, Steiner JJ, Hummer KE (2004) Genetic diversity among world hop accessions grown in the USA. Crop Sci 44:411-417
    • (2004) Crop Sci , vol.44 , pp. 411-417
    • Henning, J.A.1    Steiner, J.J.2    Hummer, K.E.3
  • 17
    • 0035866187 scopus 로고    scopus 로고
    • Diversity arrays: A solid state technology for sequence information independent genotyping
    • Jaccoud D, Peng K, Feinstein D, Kilian A (2001) Diversity arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Res 29:E25
    • (2001) Nucleic Acids Res , vol.29
    • Jaccoud, D.1    Peng, K.2    Feinstein, D.3    Kilian, A.4
  • 18
    • 34547861256 scopus 로고    scopus 로고
    • CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    • Jakobsson M, Risenberg NA (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23:1801-1806
    • (2007) Bioinformatics , vol.23 , pp. 1801-1806
    • Jakobsson, M.1    Risenberg, N.A.2
  • 19
    • 0034766129 scopus 로고    scopus 로고
    • Assessment of genetic variation and differentiation of hop genotypes by microsatellite and AFLP markers
    • Jakše J, Kindlhofer K, Javornik B (2001) Assessment of genetic variation and differentiation of hop genotypes by microsatellite and AFLP markers. Genome 44:773-782
    • (2001) Genome , vol.44 , pp. 773-782
    • Jakše, J.1    Kindlhofer, K.2    Javornik, B.3
  • 20
    • 11144352686 scopus 로고    scopus 로고
    • Microsatellite variability among wild and cultivated hops (Humulus lupulus L.)
    • Jakše J, Satovic Z, Javornik B (2004) Microsatellite variability among wild and cultivated hops (Humulus lupulus L.). Genome 47:889-899
    • (2004) Genome , vol.47 , pp. 889-899
    • Jakše, J.1    Satovic, Z.2    Javornik, B.3
  • 21
    • 84858613828 scopus 로고    scopus 로고
    • Development of transcript-associated microsatellite markers for diversity and linkage mapping studies in hop (Humulus lupulus L.)
    • in press
    • Jakše J, Stajner N, Luthar Z, Jeltsch JM, Javornik B (2010) Development of transcript-associated microsatellite markers for diversity and linkage mapping studies in hop (Humulus lupulus L.). Mol Breed (in press)
    • (2010) Mol Breed
    • Jakše, J.1    Stajner, N.2    Luthar, Z.3    Jeltsch, J.M.4    Javornik, B.5
  • 23
    • 0031314120 scopus 로고    scopus 로고
    • Investigations about the contents of the lupulin gladns of hop leaves and their importance for hop breeding
    • Kammhuber K (1997) Investigations about the contents of the lupulin gladns of hop leaves and their importance for hop breeding. Monschr Brauwiss 50:210-213
    • (1997) Monschr Brauwiss , vol.50 , pp. 210-213
    • Kammhuber, K.1
  • 25
    • 84880084339 scopus 로고    scopus 로고
    • Construction of the genetic linkage map and QTL analysis on hop (Humulus lupulus L.)
    • Koie K, Inaba A, Okada Y, Kaneko T, Ito K (2005) Construction of the genetic linkage map and QTL analysis on hop (Humulus lupulus L.). Acta Hortic 668:59-67
    • (2005) Acta Hortic , vol.668 , pp. 59-67
    • Koie, K.1    Inaba, A.2    Okada, Y.3    Kaneko, T.4    Ito, K.5
  • 28
    • 0030037980 scopus 로고    scopus 로고
    • Evaluation fo genetic variability among common buckwheat (Fagopyrum exculentum Monech) publications by RAPD markers
    • Kump B, Javornik B (1996) Evaluation fo genetic variability among common buckwheat (Fagopyrum exculentum Monech) publications by RAPD markers. Plant Sci 114:149-158
    • (1996) Plant Sci , vol.114 , pp. 149-158
    • Kump, B.1    Javornik, B.2
  • 30
    • 0345304399 scopus 로고    scopus 로고
    • The power and promise of population genomics: From genotyping to genome typing
    • Luikart G, England PR, Tallmon D, Jordan S, Taberlet P (2003) The power and promise of population genomics: from genotyping to genome typing. Nat Rev Genet 4:981-994
    • (2003) Nat Rev Genet , vol.4 , pp. 981-994
    • Luikart, G.1    England, P.R.2    Tallmon, D.3    Jordan, S.4    Taberlet, P.5
  • 33
    • 0033773254 scopus 로고    scopus 로고
    • Hops- a millennium review
    • Moir M (2000) Hops- a millennium review. J Amer Soc Brew Chem 58:131-146
    • (2000) J Amer Soc Brew Chem , vol.58 , pp. 131-146
    • Moir, M.1
  • 34
    • 0041292672 scopus 로고
    • Mechanism of humulone and lupulone synthesis in the hop cone 1: Free amino acid in the developing cones of hops
    • Mori Y (1961) Mechanism of humulone and lupulone synthesis in the hop cone 1: free amino acid in the developing cones of hops. Bull Brew Sci 6:19-22
    • (1961) Bull Brew Sci , vol.6 , pp. 19-22
    • Mori, Y.1
  • 35
    • 0034343437 scopus 로고    scopus 로고
    • Hop variety classification using the genetic distance based on RAPD
    • Murakami A (2000) Hop variety classification using the genetic distance based on RAPD. J Inst Brew 106:157-161
    • (2000) J Inst Brew , vol.106 , pp. 157-161
    • Murakami, A.1
  • 39
    • 0005814023 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonucleases
    • Nei M, Li W-H (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269-5273
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 5269-5273
    • Nei, M.1    Li, W.-H.2
  • 40
    • 0003393073 scopus 로고
    • Chapman and Hall, London
    • Neve RA (1991) Hops. Chapman and Hall, London
    • (1991) Hops
    • Neve, R.1
  • 42
    • 0034760463 scopus 로고    scopus 로고
    • Comparison of RAPD, STS, ISSR and AFLP molecular methods used for assessment of genetic diversity in hop (Humulus lupulus L.)
    • Patzak J (2001) Comparison of RAPD, STS, ISSR and AFLP molecular methods used for assessment of genetic diversity in hop (Humulus lupulus L.). Euphytica 121:9-18
    • (2001) Euphytica , vol.121 , pp. 9-18
    • Patzak, J.1
  • 43
    • 34250028493 scopus 로고    scopus 로고
    • New STS molecular markers for assessment of genetic diversity and DNA fingerprinting in hop (Humulus lupulus L.)
    • Patzak J, Vrba L, Matoušek J (2007) New STS molecular markers for assessment of genetic diversity and DNA fingerprinting in hop (Humulus lupulus L.). Genome 50:15-25
    • (2007) Genome , vol.50 , pp. 15-25
    • Patzak, J.1    Vrba, L.2    Matoušek, J.3
  • 44
    • 77949566654 scopus 로고    scopus 로고
    • Assessment of the genetic diversity of wild hops (Humulus lupulus L.) in Europe using chemical and molecular analyses
    • Patzak J, Nesvadba V, Henychová A, Krofta K (2010a) Assessment of the genetic diversity of wild hops (Humulus lupulus L.) in Europe using chemical and molecular analyses. Biochem Syst Ecol 38:136-145
    • (2010) Biochem Syst Ecol , vol.38 , pp. 136-145
    • Patzak, J.1    Nesvadba, V.2    Henychová, A.3    Krofta, K.4
  • 45
    • 78049496950 scopus 로고    scopus 로고
    • Evaluation of genetic variability of wild hops (Humulus lupulus L.) in Canada and Caucasus region by chemical and molecular methods
    • Patzak J, Nesvadba V, Krofta K, Henychová A, Inalovic M, Richards K (2010b) Evaluation of genetic variability of wild hops (Humulus lupulus L.) in Canada and Caucasus region by chemical and molecular methods. Genome 53:545-557
    • (2010) Genome , vol.53 , pp. 545-557
    • Patzak, J.1    Nesvadba, V.2    Krofta, K.3    Henychová, A.4    Inalovic, M.5    Richards, K.6
  • 47
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-959
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 49
    • 84980125889 scopus 로고
    • Composition and biogenesis of essential oil in hop
    • Roberts JB, Stevens R (1962) Composition and biogenesis of essential oil in hop. J Inst Brew 68:420-426
    • (1962) J Inst Brew , vol.68 , pp. 420-426
    • Roberts, J.B.1    Stevens, R.2
  • 50
    • 79958754302 scopus 로고    scopus 로고
    • NTSYS-pc: Numerical taxonomy and multivariate analysis system, version 2.1. Exeter Software, Setauket Rosenberg NA (2004) DISTRUCT: A program for the graphical display of population structure
    • Rohlf FJ (2000) NTSYS-pc: numerical taxonomy and multivariate analysis system, version 2.1. Exeter Software, Setauket Rosenberg NA (2004) DISTRUCT: a program for the graphical display of population structure. Mol Ecol Notes 4:137-138
    • (2000) Mol Ecol Notes , vol.4 , pp. 137-138
    • Rohlf, F.J.1
  • 51
    • 0034045775 scopus 로고    scopus 로고
    • Genetic diversity and phylogenetic relationships among accessions of hop, Humulus lupulus, as determined by amplified fragment length polymorphism fingerprinting compared with pedigree data
    • Seefelder S, Ehrmaier H, Schweizer G, Seigner E (2000a) Genetic diversity and phylogenetic relationships among accessions of hop, Humulus lupulus, as determined by amplified fragment length polymorphism fingerprinting compared with pedigree data. Plant Breed 119:257-263
    • (2000) Plant Breed , vol.119 , pp. 257-263
    • Seefelder, S.1    Ehrmaier, H.2    Schweizer, G.3    Seigner, E.4
  • 52
    • 0034089087 scopus 로고    scopus 로고
    • Male and female genetic linkage map of hops, Humulus lupulus
    • Seefelder S, Ehrmaier H, Schweizer G, Seigner E (2000b) Male and female genetic linkage map of hops, Humulus lupulus. Plant Breed 119:249-255
    • (2000) Plant Breed , vol.119 , pp. 249-255
    • Seefelder, S.1    Ehrmaier, H.2    Schweizer, G.3    Seigner, E.4
  • 53
    • 0002951412 scopus 로고
    • A numerical and nomenclatural analysis of morphogeographic taxa of Humulus
    • Small E (1978) A numerical and nomenclatural analysis of morphogeographic taxa of Humulus. Syst Bot 3:37-76
    • (1978) Syst Bot , vol.3 , pp. 37-76
    • Small, E.1
  • 54
    • 0012012546 scopus 로고
    • The relationships of hop cultivars and wild variants of Humulus lupulus
    • Small E (1980) The relationships of hop cultivars and wild variants of Humulus lupulus. Can J Bot 58:676-686
    • (1980) Can J Bot , vol.58 , pp. 676-686
    • Small, E.1
  • 55
    • 0011999292 scopus 로고
    • A numerical analysis of morph-geographic groups of cultivars of Humulus lupulus based on samples of cones
    • Small E (1981) A numerical analysis of morph-geographic groups of cultivars of Humulus lupulus based on samples of cones. Can J Bot 59:311-324
    • (1981) Can J Bot , vol.59 , pp. 311-324
    • Small, E.1
  • 56
    • 42149186400 scopus 로고    scopus 로고
    • Genetic structure and differentiation in hop (Humulus lupulus L.) as inferred from microsatellites
    • Stajner N, Satovic Z, Cerenak A, Javornik B (2008) Genetic structure and differentiation in hop (Humulus lupulus L.) as inferred from microsatellites. Euphytica 161:301-311
    • (2008) Euphytica , vol.161 , pp. 301-311
    • Stajner, N.1    Satovic, Z.2    Cerenak, A.3    Javornik, B.4
  • 57
    • 0034616192 scopus 로고    scopus 로고
    • Prenylflavonoid variation in Humulus lupulus: Distribution and taxonomic significance of xanthogalenol and 40-O0methylxanthohumol
    • Stevens JF, Taylor AW, Nickerson GB, Ivancic M, Henning J, Haunold A, Deinzer ML (2000) Prenylflavonoid variation in Humulus lupulus: distribution and taxonomic significance of xanthogalenol and 40-O0methylxanthohumol. Phytochemistry 53:759-775
    • (2000) Phytochemistry , vol.53 , pp. 759-775
    • Stevens, J.F.1    Taylor, A.W.2    Nickerson, G.B.3    Ivancic, M.4    Henning, J.5    Haunold, A.6    Deinzer, M.L.7
  • 58
    • 0345399126 scopus 로고
    • The probable error or a mean
    • Student
    • Student (1908) The probable error or a mean. Biometrika VI:1-25
    • (1908) Biometrika VI , pp. 1-25
  • 59
    • 0345104283 scopus 로고    scopus 로고
    • Genetic relationships in cultivars of hop, Humulus lupulus L., determined by RAPD analysis
    • Šuštar-Vozlič J, Javornik B (1999) Genetic relationships in cultivars of hop, Humulus lupulus L., determined by RAPD analysis. Plant Breed 118:175-181
    • (1999) Plant Breed , vol.118 , pp. 175-181
    • Šuštar-Vozlič, J.1    Javornik, B.2
  • 60
    • 0004248459 scopus 로고    scopus 로고
    • PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer, Sunderland Tajima F (1983) Evolutionary relationship of DNA sequences in finite populations
    • Swofford DL (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer, Sunderland Tajima F (1983) Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460
    • (2002) Genetics , vol.105 , pp. 437-460
    • Swofford, D.L.1
  • 62
    • 63149134337 scopus 로고    scopus 로고
    • AFLP discrimination of native North American and cultivated hop
    • Townsend MS, Henning JA (2009) AFLP discrimination of native North American and cultivated hop. Crop Sci 49:600-607
    • (2009) Crop Sci , vol.49 , pp. 600-607
    • Townsend, M.S.1    Henning, J.A.2
  • 63
    • 0000495111 scopus 로고
    • Characterization of tricyclic sesquiterpenes in hop (Humulus lupulus, var. Hersbrucker Spät)
    • Tressl R, Engel KH, Kossa M, Köppler H (1983) Characterization of tricyclic sesquiterpenes in hop (Humulus lupulus, var. Hersbrucker Spät). J Agric Food Chem 31:892-897
    • (1983) J Agric Food Chem , vol.31 , pp. 892-897
    • Tressl, R.1    Engel, K.H.2    Kossa, M.3    Köppler, H.4
  • 64
    • 0003043159 scopus 로고
    • Centenary review: 100 years of hop chemistry and its relevance to brewing
    • Verzele M (1986) Centenary review: 100 years of hop chemistry and its relevance to brewing. J Inst Brew 92:32-48
    • (1986) J Inst Brew , vol.92 , pp. 32-48
    • Verzele, M.1
  • 67
    • 84890417804 scopus 로고
    • The genetical structure of populations
    • Wright S (1951) The genetical structure of populations. Ann Eugen 15:323-354
    • (1951) Ann Eugen , vol.15 , pp. 323-354
    • Wright, S.1
  • 68
    • 18144381082 scopus 로고    scopus 로고
    • DArT for high-throughput genotyping of Cassava (Manihot esculenta) and its wild relatives
    • Xia L, Peng K, Yang S, Wenzl P, Carmen De Vicente M, Fregene M, Kilian A (2005) DArT for high-throughput genotyping of Cassava (Manihot esculenta) and its wild relatives. Theor Appl Genet 110:1092-1098
    • (2005) Theor Appl Genet , vol.110 , pp. 1092-1098
    • Xia, L.1    Peng, K.2    Yang, S.3    Wenzl, P.4    De Vicente, C.M.5    Fregene, M.6    Kilian, A.7
  • 69
    • 33746448684 scopus 로고    scopus 로고
    • Low level of genetic diversity in cultivated Pigeonpea compared to its wild relatives is revealed by diversity arrays technology
    • Yang S, Pang W, Ash G, Harper J, Carling J, Wenzl P, Huttner E, Zong X, Kilian A (2006) Low level of genetic diversity in cultivated Pigeonpea compared to its wild relatives is revealed by diversity arrays technology. Theor Appl Genet 113:585-595
    • (2006) Theor Appl Genet , vol.113 , pp. 585-595
    • Yang, S.1    Pang, W.2    Ash, G.3    Harper, J.4    Carling, J.5    Wenzl, P.6    Huttner, E.7    Zong, X.8    Kilian, A.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.