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Volumn 77, Issue 11, 2011, Pages 3884-3887

Syntrophomonadaceae-affiliated species as active butyrate-utilizing syntrophs in paddy field soil

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL; PADDY FIELD SOILS; PLANCTOMYCETES; STABLE-ISOTOPE PROBING;

EID: 79958296974     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00190-11     Document Type: Article
Times cited : (67)

References (30)
  • 1
    • 33646094482 scopus 로고    scopus 로고
    • Fatty acid-oxidizing consortia along a nutrient gradient in the Florida everglades
    • Chauhan, A., and A. Ogram. 2006. Fatty acid-oxidizing consortia along a nutrient gradient in the Florida everglades. Appl. Environ. Microbiol. 72: 2400-2406
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 2400-2406
    • Chauhan, A.1    Ogram, A.2
  • 2
    • 19144372182 scopus 로고    scopus 로고
    • Stable isotope probing-linking microbial identity to function
    • Dumont, M. G., and J. C. Murrell. 2005. Stable isotope probing-linking microbial identity to function. Nat. Rev. Microbiol. 3:499-504
    • (2005) Nat. Rev. Microbiol. , vol.3 , pp. 499-504
    • Dumont, M.G.1    Murrell, J.C.2
  • 3
    • 0033987692 scopus 로고    scopus 로고
    • Fermentation pattern of methanogenic degradation of rice straw in anoxic paddy soil
    • Glissmann, K., and R. Conrad. 2000. Fermentation pattern of methanogenic degradation of rice straw in anoxic paddy soil. FEMS Microbiol. Ecol. 31: 117-126
    • (2000) FEMS Microbiol. Ecol. , vol.31 , pp. 117-126
    • Glissmann, K.1    Conrad, R.2
  • 4
    • 0036926813 scopus 로고    scopus 로고
    • Saccharolytic activity and its role as a limiting step in methane formation during the anaerobic degradation of rice straw in rice paddy soil
    • Glissmann, K., and R. Conrad. 2002. Saccharolytic activity and its role as a limiting step in methane formation during the anaerobic degradation of rice straw in rice paddy soil. Biol. Fertil. Soils 35:62-67
    • (2002) Biol. Fertil. Soils , vol.35 , pp. 62-67
    • Glissmann, K.1    Conrad, R.2
  • 5
    • 44949223675 scopus 로고    scopus 로고
    • Detection of active butyrate-degrading microorganisms in methanogenic sludges by RNA-based stable isotope probing
    • Hatamoto, M., H. Imachi, Y. Yashiro, A. Ohashi, and H. Harada. 2008. Detection of active butyrate-degrading microorganisms in methanogenic sludges by RNA-based stable isotope probing. Appl. Environ. Microbiol. 74:3610-3614
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 3610-3614
    • Hatamoto, M.1    Imachi, H.2    Yashiro, Y.3    Ohashi, A.4    Harada, H.5
  • 6
    • 33846158810 scopus 로고    scopus 로고
    • Identification of acetate-assimilating microorganisms under methanogenic conditions in anoxic rice field soil by comparative stable isotope probing of RNA
    • Hori, T., M. Noll, Y. Igarashi, M. Friedrich, and R. Conrad. 2007. Identification of acetate-assimilating microorganisms under methanogenic conditions in anoxic rice field soil by comparative stable isotope probing of RNA. Appl. Environ. Microbiol. 73:101-109
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 101-109
    • Hori, T.1    Noll, M.2    Igarashi, Y.3    Friedrich, M.4    Conrad, R.5
  • 7
    • 77955250570 scopus 로고    scopus 로고
    • Thermoanaerobacteriaceae oxidize acetate in methanogenic rice field soil at 50°C
    • Liu, F. H., and R. Conrad. 2010. Thermoanaerobacteriaceae oxidize acetate in methanogenic rice field soil at 50°C. Environ. Microbiol. 12:2341-2354
    • (2010) Environ. Microbiol. , vol.12 , pp. 2341-2354
    • Liu, F.H.1    Conrad, R.2
  • 8
    • 23644433664 scopus 로고    scopus 로고
    • In situ stable isotope probing of methanogenic archaea in the rice rhizosphere
    • Lu, Y. H., and R. Conrad. 2005. In situ stable isotope probing of methanogenic archaea in the rice rhizosphere. Science 309:1088-1090
    • (2005) Science , vol.309 , pp. 1088-1090
    • Lu, Y.H.1    Conrad, R.2
  • 9
    • 14344266223 scopus 로고    scopus 로고
    • Detecting active methanogenic populations on rice roots using stable isotope probing
    • Lu, Y., T. Lueders, W. Michael, M. W. Friedrich, and R. Conrad. 2005.Detecting active methanogenic populations on rice roots using stable isotope probing. Environ. Microbiol. 7:326-336
    • (2005) Environ. Microbiol. , vol.7 , pp. 326-336
    • Lu, Y.1    Lueders, T.2    Michael, W.M.3    Friedrich, W.4    Conrad, R.5
  • 10
    • 2542523843 scopus 로고    scopus 로고
    • ARB: a software environment for sequence data
    • Ludwig, W., et al. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371
    • (2004) Nucleic Acids Res , vol.32 , pp. 1363-1371
    • Ludwig, W.1
  • 11
    • 0842266326 scopus 로고    scopus 로고
    • Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients
    • Lueders, T., M. Manefield, and M. W. Friedrich. 2004. Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients. Environ. Microbiol. 6:73-78
    • (2004) Environ. Microbiol. , vol.6 , pp. 73-78
    • Lueders, T.1    Manefield, M.2    Friedrich, M.W.3
  • 12
    • 8144231103 scopus 로고    scopus 로고
    • Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soil
    • Lueders, T., B. Pommerenke, and M. W. Friedrich. 2004. Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soil. Appl. Environ. Microbiol. 70:5778-5786
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5778-5786
    • Lueders, T.1    Pommerenke, B.2    Friedrich, M.W.3
  • 13
    • 26444536625 scopus 로고    scopus 로고
    • Defluvicoccus vanus gen. nov., sp. nov., a novel Gram-negative coccus/coccobacillus in the 'Alphaproteobacteria' from activated sludge
    • Maszenan, A. M., R. J. Seviour, B. K. Patel, P. H. Janssen, and J. Wanner. 2005. Defluvicoccus vanus gen. nov., sp. nov., a novel Gram-negative coccus/coccobacillus in the 'Alphaproteobacteria' from activated sludge. Int. J. Syst. Evol. Microbiol. 55:2105-2111
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 2105-2111
    • Maszenan, A.M.1    Seviour, R.J.2    Patel, B.K.3    Janssen, P.H.4    Wanner, J.5
  • 14
    • 0034023853 scopus 로고    scopus 로고
    • Pelospora glutarica gen. nov., sp nov., a glutarate-fermenting, strictly anaerobic, sporeforming bacterium
    • Matthies, C., N. Springer, W. Ludwig, and B. Schink. 2000. Pelospora glutarica gen. nov., sp nov., a glutarate-fermenting, strictly anaerobic, sporeforming bacterium. Int. J. Syst. Evol. Microbiol. 50:645-648
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 645-648
    • Matthies, C.1    Springer, N.2    Ludwig, W.3    Schink, B.4
  • 15
    • 0019420777 scopus 로고
    • Syntrophomonas wolfei gen. nov. sp. nov., an anaerobic, syntrophic, fatty acid-oxidizing bacterium
    • McInerney, M. J., M. P. Bryant, R. B. Hespell, and J. W. Costerton. 1981. Syntrophomonas wolfei gen. nov. sp. nov., an anaerobic, syntrophic, fatty acid-oxidizing bacterium. Appl. Environ. Microbiol. 41:1029-1039
    • (1981) Appl. Environ. Microbiol. , vol.41 , pp. 1029-1039
    • McInerney, M.J.1    Bryant, M.P.2    Hespell, R.B.3    Costerton, J.W.4
  • 16
    • 0018364444 scopus 로고
    • Anaerobic bacterium that degrades fatty-acids in syntrophic association with methanogens
    • McInerney, M. J., M. P. Bryant, and N. Pfennig. 1979. Anaerobic bacterium that degrades fatty-acids in syntrophic association with methanogens. Arch. Microbiol. 122:129-135
    • (1979) Arch. Microbiol. , vol.122 , pp. 129-135
    • McInerney, M.J.1    Bryant, M.P.2    Pfennig, N.3
  • 17
    • 34250634847 scopus 로고    scopus 로고
    • The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth
    • McInerney, M. J., et al. 2007. The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth. Proc. Natl. Acad. Sci. U. S. A. 104:7600-7605
    • (2007) Proc. Natl. Acad. Sci. U. S. A , vol.104 , pp. 7600-7605
    • McInerney, M.J.1
  • 18
    • 0003482588 scopus 로고
    • Chemical and microbiological properties. Part 2., 2nd ed. American Society of Agronomy, Madison WI
    • Page, A. L., R. H. Miller, and D. R. Keeney. 1982. Methods of soil analysis. Part 2. Chemical and microbiological properties, 2nd ed. American Society of Agronomy, Madison, WI
    • (1982) Methods of soil analysis
    • Page, A.L.1    Miller, R.H.2    Keeney, D.R.3
  • 19
    • 43049141492 scopus 로고    scopus 로고
    • Dynamics of the methanogenic archaeal community during plant residue decomposition in an anoxic rice field soil
    • Peng, J., Z. Lu, J. Rui, and Y. Lu. 2008. Dynamics of the methanogenic archaeal community during plant residue decomposition in an anoxic rice field soil. Appl. Environ. Microbiol. 74:2894-2901
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2894-2901
    • Peng, J.1    Lu, Z.2    Rui, J.3    Lu, Y.4
  • 20
    • 44849128159 scopus 로고    scopus 로고
    • Applying stable isotope probing of phospholipid fatty acids and rRNA in a Chinese rice field to study activity and composition of the methanotrophic bacterial communities in situ
    • Qiu, Q., M. Noll, W. R. Abraham, Y. Lu, and R. Conrad. 2008. Applying stable isotope probing of phospholipid fatty acids and rRNA in a Chinese rice field to study activity and composition of the methanotrophic bacterial communities in situ. ISME J. 2:602-614
    • (2008) ISME J , vol.2 , pp. 602-614
    • Qiu, Q.1    Noll, M.2    Abraham, W.R.3    Lu, Y.4    Conrad, R.5
  • 21
    • 0022459024 scopus 로고
    • Synthrophomonas sapovorans sp. nov., a new obligately proton reducing anaerobe oxidizing saturated and unsaturated long chain fatty acids
    • Roy, F., E. Samain, H. C. Dubourguier, and G. Albagnac. 1986. Synthrophomonas sapovorans sp. nov., a new obligately proton reducing anaerobe oxidizing saturated and unsaturated long chain fatty acids. Arch. Microbiol. 145:142-147
    • (1986) Arch. Microbiol. , vol.145 , pp. 142-147
    • Roy, F.1    Samain, E.2    Dubourguier, H.C.3    Albagnac, G.4
  • 22
    • 67650494989 scopus 로고    scopus 로고
    • Succession of bacterial populations during plant residue decomposition in rice field soil
    • Rui, J., J. Peng, and Y. Lu. 2009. Succession of bacterial populations during plant residue decomposition in rice field soil. Appl. Environ. Microbiol. 75:4879-4886
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 4879-4886
    • Rui, J.1    Peng, J.2    Lu, Y.3
  • 23
    • 0030871461 scopus 로고    scopus 로고
    • Energetics of syntrophic cooperation in methanogenic degradation
    • Schink, B. 1997. Energetics of syntrophic cooperation in methanogenic degradation. Microbiol. Mol. Biol. Rev. 61:262-280
    • (1997) Microbiol. Mol. Biol. Rev. , vol.61 , pp. 262-280
    • Schink, B.1
  • 24
    • 77955241649 scopus 로고    scopus 로고
    • The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production
    • Sieber, J. R., et al. 2010. The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production. Environ. Microbiol. 12:2289-2301
    • (2010) Environ. Microbiol. , vol.12 , pp. 2289-2301
    • Sieber, J.R.1
  • 25
    • 73349117538 scopus 로고    scopus 로고
    • Composition of archaeal community in a paddy field as affected by rice cultivar and N fertilizer
    • Wu, L. Q., K. Ma, Q. Li, X. B. Ke, and Y. H. Lu. 2009. Composition of archaeal community in a paddy field as affected by rice cultivar and N fertilizer. Microb. Ecol. 58:819-826
    • (2009) Microb. Ecol. , vol.58 , pp. 819-826
    • Wu, L.Q.1    Ma, K.2    Li, Q.3    Ke, X.B.4    Lu, Y.H.5
  • 26
    • 77955639024 scopus 로고    scopus 로고
    • Thermosporothrix hazakensis gen. nov., sp nov., isolated from compost, description of Thermosporotrichaceae fam. nov within the class Ktedonobacteria Cavaletti et al. 2007 and emended description of the class Ktedonobacteria
    • Yabe, S., Y. Aiba, Y. Sakai, M. Hazaka, and A. Yokota. 2010. Thermosporothrix hazakensis gen. nov., sp nov., isolated from compost, description of Thermosporotrichaceae fam. nov within the class Ktedonobacteria Cavaletti et al. 2007 and emended description of the class Ktedonobacteria. Int. J. Syst. Evol. Microbiol. 60:1794-1801
    • (2010) Int. J. Syst. Evol. Microbiol. , vol.60 , pp. 1794-1801
    • Yabe, S.1    Aiba, Y.2    Sakai, Y.3    Hazaka, M.4    Yokota, A.5
  • 27
    • 35648976034 scopus 로고    scopus 로고
    • Yamada, T., et al. 2007. Bellilinea caldifistulae gen. nov., sp nov and Longilinea arvoryzae gen. nov., sp nov., strictly anaerobic, filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate-degrading consortia. Int. J. Syst. Evol. Microbiol. 57:2299-2306
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 2299-2306
    • Yamada, T.1
  • 28
    • 78649715235 scopus 로고    scopus 로고
    • Response of methanogenic archaeal community to nitrate addition in rice field soil
    • Yuan, Q. A., and Y. H. Lu. 2009. Response of methanogenic archaeal community to nitrate addition in rice field soil. Environ. Microbiol. Rep. 1:362-369
    • (2009) Environ. Microbiol. Rep. , vol.1 , pp. 362-369
    • Yuan, Q.A.1    Lu, Y.H.2
  • 29
    • 78649714405 scopus 로고    scopus 로고
    • Responses of methanogenic archaeal community to oxygen exposure in rice field soil
    • Yuan, Y. L., R. Conrad, and Y. H. Lu. 2009. Responses of methanogenic archaeal community to oxygen exposure in rice field soil. Environ. Microbiol. Rep. 1:347-354
    • (2009) Environ. Microbiol. Rep. , vol.1 , pp. 347-354
    • Yuan, Y.L.1    Conrad, R.2    Lu, Y.H.3
  • 30
    • 2942674763 scopus 로고    scopus 로고
    • Syntrophomonas curvata sp. nov., an anaerobe that degrades fatty acids in co-culture with methanogens
    • Zhang, C., X. Liu, and X. Dong. 2004. Syntrophomonas curvata sp. nov., an anaerobe that degrades fatty acids in co-culture with methanogens. Int. J. Syst. Evol. Microbiol. 54:969-973.
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 969-973
    • Zhang, C.1    Liu, X.2    Dong, X.3


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