Phylogenetic position of Coronastrum ellipsoideum and description of Parachlorella hussii sp. nov.

Biologia

Volumn 66, Issue 4, 2011, Pages 585-594

  Bock, Christina ^a   Pažoutová, Marie ^b   Krienitz, Lothar ^a  

^a LEIBNIZ INSTITUTE OF FRESHWATER ECOLOGY AND INLAND FISHERIES   (Germany)

^b UNIVERSITY OF SOUTH BOHEMIA   (Czech Republic)

Author keywords

Chlorella; Coronastrum; Dictyosphaerium; ITS; Parachlorella; phylogeny; taxonomy

Indexed keywords

CHLORELLA (CHLORELLALES); CHLORELLA (PRASIOLALES); CHLORELLA (UNCLASSIFIED CHLOROPHYCEAE); CHLORELLA (UNCLASSIFIED TREBOUXIOPHYCEAE); CHLORELLACEAE; CHLOROPHYCEAE; CORONASTRUM; DICTYOSPHAERIUM; PARACHLORELLA; SCENEDESMACEAE; TREBOUXIOPHYCEAE;

EID: 79958291282     PISSN: 00063088     EISSN: 13369563     Source Type: Journal    
DOI: 10.2478/s11756-011-0056-8     Document Type: Article

References (60)

1. Allgaier M. & Grossart H. P. 2006. Seasonal dynamics and phylogenetic diversity of free-living and particle-associated bacterial communities in four lakes in northeastern Germany. Aquatic Microbial Ecology 45: 115-128.
2. An S. S., Friedl T. & Hegewald E. 1999. Phylogenetic relationships of Scenedesmus and Scenedesmus-like coccoid green algae as inferred from ITS-2 rDNA sequence comparisons. Plant Biology 1: 418-428.
3. Bischoff H. & Bold H. C. 1963. Some soil algae from Enchanted Rock and related algal species. Phycological studies IV. Univ. Texas Publ. 6318: 1-95.
4. Bock C., Pröschold T. & Krienitz L. 2010. Two new Dictyosphaerium-morphotype lineages of the Chlorellaceae (Trebouxiophyceae): Heynigia gen. nov. and Hindakia gen. nov. Eur. J. Phycol. 45: 267-277.
5. Bock, C., Pröschold, T.& Krienitz L. 2011. Updating the genus Dictyosphaerium and description of Mucidosphaerium gen. nov. (Trebouxiophyceae) based on morphological and molecular data. J. Phycol. 47.
6. Bürgi H. R., Weber P. & Bachmann H. 1985. Seasonal variations in the trophic structure of phyto-and zooplankton communities in lakes in different trophic states. Aquat. Sci. 47: 197-224.
7. Byun Y. & Han K. 2006. PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures. Nucleic Acids Res. 34: 416-422.
8. Chapman R. L., Buchheim J., Delwiche C. F., Friedl T., Huss V. A. R., Karol K. G., Lewis L. A., Manhart R. M., McCourt M., Olsen J. L. & Waters D. A. 1998. Molecular systematics of the green algae, pp. 508-540. In: Soltis S., Soltis D. E. & Doyle J. J. (eds), The molecular systematics of plants II, Kluwer Academic Publishers, Norwell, Massachusetts.
9. Coleman A. W. 2003. ITS2 is a double-edged tool for eukaryote evolutionary comparisons. Trends in Genetics 19: 370-375.
10. Coleman A. W. 2007. Pan-eukaryote ITS2 homologies revealed by RNA secondary structure. Nucleic Acids Res. 35: 3322-3329.
11. Coleman A. W. 2009. Is there a molecular key to the level of "biological species" in eukaryotes? A DNA guide. Mol. Phylogenet. Evol. 50: 197-203.
12. Comas A. 1992. Taxonomical contributions to the green algal flora (Chlorellales) of Cuba. Archiv für Hydrobiologie (Suppl.) 93: 11-21.
13. Darienko T., Gustavs L., Mudimu O., Menendez C. R., Schumann R., Karsten U., Friedl T. & Pröschold T. 2010. Chloroidium, a common terrestrial coccoid green alga previously assigned to Chlorella (Trebouxiophyceae, Chlorophyta). Eur. J. Phycol. 45: 79-95.
14. Fawley M. W., Fawley K. P. & Owen H. A. 2005. Diversity and ecology of small coccoid green algae from Lake Itasca, Minnesota, USA, including Meyerella planktonica, gen. et sp. nov. Phycologia 44: 35-48.
15. Flint E. A. 1950. An investigation of the distribution in time and space of the algae of a British water reservoir. Hydrobiologia 2: 217-240.
16. Fott B. 1946. Taxonomical Studies on Chlorococcales I. Stud. Bot. Chechoslov. 7: 165-171.
17. Friedl T. 1997. The evolution of the Green Algae. Plant Systematics and Evolution 11: 87-101.
18. Gemeinholzer B., Droege G., Zetsche H., Knebelsberger T., Raupach M., Borsch T., Klenk H.-P., Haszprunar G. & Waegele J.-W. 2010. DNA Bank Network Webportal. http://www. dnabank-network. org.
19. Hegewald E. H. & Hanagata N. 2000. Phylogenetic studies on Scenedesmaceae (Chlorophyta). Algological studies 100: 29-49.
20. Hepperle D. 2004a. SeqAssem©. A sequence analysis tool, contig assembler and trace data visualization tool for molecular sequences. http://www. sequentix. de.
21. Hepperle D. 2004b. SequentiX Alignment Editor. Distributed by Author.
22. Huelsenbeck J. P. & Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
23. Huss V. A. R., Frank C., Hartmann E. C., Hirmer M., Kloboucek A., Seidel B. M., Wenzeler P. & Kessler E. 1999. Biochemical taxonomy and molecular phylogeny of the genus Chlorella sensu lato (Chlorophyta). J. Phycol. 35: 587-598.
24. Jahn R. & Kusber W. H. (eds) 2010. AlgaTerra Information System [online]. Botanic Garden and Botanical Museum Berlin-Dahlem, FU-Berlin. Available at http://www. algaterra. org.
25. John D. M. & Tsarenko P. M. 2002. Order Chlorococcales, pp. 409. In: John D. M., Whitton B. A. & Brook A. J. (eds), The Freshwater Algal Flora of the British Isles. An identification guide to freshwater and terrestrial algae, Cambridge University Press., Cambridge.
26. Jose L., Shaji C. & Patel R. J. 1990. Coronastrum lunatum. A new chlorococcal alga from India. Cryptogamie Algologie 11: 9-12.
27. Katana A., Kwiatowski J., Spalik K., Zakrys B., Szalacha E. & Szymanska H. 2001. Phylogenetic position of Koliella (Chlorophyta) as inferred from nuclear and chloroplast small subunit rDNA. J. Phycol. 37: 443-451.
28. Keller A., Forster F., Müller T., Dandekar T., Schultz J. & Wolf M. 2010. Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees. Biology Direct 5: 4.
29. Kim B. H. & Takamura N. 2000. Morphological study of the coenobium of Coronastrum lunatum (Chlorophyceae). Phycologia 39: 153-156.
30. Komárek J. 1974. The morphology and taxonomy of crucigenoid algae (Scenedesmaceae, Chlorococcales). Archiv für Protistenkunde 116: 1-75.
31. Komárek J. & Fott B. 1983. Chlorophyceae (Grünalgen) Ordung: Chlorococcales, pp. 1-1044. In: Huber-Pestalozzi G. (ed.), Das Phytoplankton des Süsswasser, 7. Teil, 1. Hälfte. Schweizerbart'sche Verlagsbuchhandlung, Stuttgart.
32. Krienitz L., Bock C., Luo W. & Pröschold T. 2010. Polyphyletic origin of the Dictyosphaerium morphotype within Chlorellaceae (Trebouxiophyceae). J. Phycol. 46: 559-563.
33. Krienitz L., Hegewald E., Hepperle D. & Wolf M. 2003. The systematics of coccoid green algae: 18S rRNA gene sequence data versus morphology. Biologia 58: 437-446.
34. Krienitz L., Hegewald E. H., Hepperle D., Huss V. A. R., Rohr T. & Wolf M. 2004. Phylogenetic relationship of Chlorella and Parachlorella gen. nov. (Chlorophyta, Trebouxiophyceae). Phycologia 43: 529-542.
35. Krienitz L. & Wirth M. 2006. The high content of polyunsaturated fatty acids in Nannochloropsis limnetica (Eustigmatophyceae) and its implication for food web interactions, freshwater aquaculture and biotechnology. Limnologica 36: 204-210.
36. Lewis L. A. & McCourt M. 2004. Green Algae and the origin of land plants. Am. J. Bot. 91: 1535-1556.
37. Luo W., Pröschold T., Bock C. & Krienitz L. 2010. Generic concept in Chlorella-related coccoid green algae (Chlorophyta, Trebouxiophyceae). Plant Biology 12: 545-53.
38. Marin B., Klingberg M. & Melkonian M. 1998. Phylogenetic relationships among the cryptophyta: Analyses of nuclearencoded SSU rRNA sequences support the monophyly of extant plastid-containing lineages. Protist 149: 265-276.
39. Marin B., Palm A., Klingberg M. & Melkonian M. 2003. Phylogeny and taxonomic revision of plastid-containing euglenophytes based on SSU rDNA sequence comparisons and synapomorphic signatures in the SSU rRNA secondary structure. Protist 154: 99-145.
40. Melkonian M. & Surek B. 1995. Phylogeny of the Chlorophyta - Congruence between ultrastructural and molecular evidence. Bulletin de la Societe Zoologique de France-Evolution et Zoologie 120: 191-208.
41. Müller T., Philippi N., Dandekar T., Schultz J. & Wolf M. 2007. Distinguishing species. RNA 13: 1469-1472.
42. Nakada T., Nozaki H. & Pröschold T. 2008. Molecular phylogeny, ultrastructure, and taxonomic revision of Chlorogonium (Chlorophyta): Emendation of Chlorogonium and description of Gungnir gen. nov and Rusalka gen. nov. J. Phycol. 44: 751-760.
43. Pažoutová M., Škaloud P. & Nemjová K. 2010. Phylogenetic position of Ooplanctella planoconvexa, gen. et comb. nova and Echinocoleum elegans (Oocystaceae, Trebouxiophyceae, Chlorophyta). Fottea 10: 75-82.
44. Pfiester L. A. 1977. Alga Coronastrum - rare find. Transactions of the American Microscopical Society 96: 163.
45. Posada D. & Crandall K. A. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
46. Posada D. & Buckley T. R. 2004. Model selection and model averaging in phylogenetics: Advantages of akaike information criterion and Bayesian approaches over likelihood ratio tests. Systematic Biology 53: 793-808.
47. Pröschold T., Bock C., Luo W. & Krienitz L. 2010. Polyphyletic distribution of bristle formation in Chlorellaceae: Micractinium, Diacanthos, Didymogenes and Hegewaldia gen. nov. (Trebouxiophyceae, Chlorophyta). Phycological Research 58: 1-8.
48. Pröschold T. & Leliaert F. 2007. Systematics of the green algae: conflict of classic and modern approaches, pp. 123-153. In: Brodie J. & Lewis J. M. (eds), Unravelling the algae: the past, present, and future of algal systematics, CRC Press, Boca Raton, FL (USA).
49. Rosenthal A., Coutelle O. & Craxton M. 1993. Large-scale production of DNA sequencing templates by microtitre format PCR. Nucleic Acids Res. 21: 173-174.
50. Schnepf E. & Hegewald E. H. 1993. Didymogenes palatina Schmidle and Didymogenes anomala (G. M. Smith) Hind. (Chlorococcales): Taxonomy, ultrastructure, autosporogenesis and autospore wall assembly. Arch. Protistenkd. 143: 41-53.
51. Schultz J., Maisel S., Gerlach D., Müller T. & Wolf M. 2005. A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota. RNA 11: 361-364.
52. Schultz J. & Wolf M. 2009. ITS2 sequence-structure analysis in phylogenetics: A how-to manual for molecular systematics. Mol. Phylogenet. Evol. 52: 250-252.
53. Seibel P. N., Müller T., Dandekar T., Schultz J. & Wolf M. 2006. 4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing. BMC 7: 498.
54. Seibel P. N., Dandekar T., Müller T. & Wolf M. 2008. Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE. BMC Bioinf. 91: 1-7.
55. Swofford D. L. 2002. Phylogenetic analysis using parsimony (* and other methods), version 4. 0b 10.
56. Thompson R. H. 1938. Coronastrum: A new genus of algae in the family Scenedesmaceae. Am. J. Bot. 25: 692-694.
57. Thompson R. H. 1950. A new species of Coronastrum. Am. J. Bot. 37: 371-373.
58. Williams E. G. 1972. Notes on two algae of small bodies of water. Eur. J. Phycol. 7: 61-63.
59. Wolf M., Hepperle D. & Krienitz L. 2003. On the phylogeny of Radiococcus, Planktosphaeria and Schizochlamydella (Radiococcaceae, Chlorophyta). Biologia 58: 759-765.
60. Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31: 3406-3415.