Characterization of the transcripts of human cytomegalovirus UL144

Virology Journal

Volumn 8, Issue , 2011, Pages

  He, Rong ^a   Ma, Yanping ^a   Qi, Ying ^a   Wang, Ning ^a   Li, Mali ^a   Ji, Yaohua ^a   Sun, Zhengrong ^a   Jiang, Shujuan ^a   Ruan, Qiang ^a  

^a CHINA MEDICAL UNIVERSITY   (China)

Author keywords

cytomegalovirus; transcription; UL144

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; MEMBRANE PROTEIN; UL144 ORF PROTEIN, HUMAN HERPESVIRUS 5; VIRUS PROTEIN;

ARTICLE; CONGENITAL INFECTION; CONTROLLED STUDY; DNA LIBRARY; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; HUMAN CYTOMEGALOVIRUS; HYBRIDIZATION; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; URINALYSIS; VIRUS ISOLATION; CYTOMEGALOVIRUS; CYTOMEGALOVIRUS INFECTION; GENE EXPRESSION PROFILING; GENE LIBRARY; GENETICS; ISOLATION AND PURIFICATION; URINE; VIROLOGY;

CYTOMEGALOVIRUS; HUMAN HERPESVIRUS 5;

BLOTTING, NORTHERN; CYTOMEGALOVIRUS; CYTOMEGALOVIRUS INFECTIONS; GENE EXPRESSION PROFILING; GENE LIBRARY; HUMANS; MEMBRANE GLYCOPROTEINS; TRANSCRIPTION, GENETIC; URINE; VIRAL PROTEINS;

EID: 79958266618     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-8-299     Document Type: Article

References (36)

1. Congenital and perinatal cytomegalovirus infections. C Alford S Stagno R Pass W Britt, Rev Infect Dis 1990 12 Suppl 7 745 753 2173104
2. Congenital cytomegalovirus infection and hearing loss. RF Pass, Herpes 2005 12 50 55 16209862 (Pubitemid 41512784)
3. M Ho, Cytomegalovirus biology and infection NEW YORK: plenum publishing corp 2 1991
4. Fibroblasts, epithelial cells, endothelial cells and smooth muscle cells are major targets of human cytomegalovirus infection in lung and gastrointestinal tissues. C Sinzger A Grefte B Plachter A Gouw T The G Jahn, J Gen Virol 1995 76 Pt 4 741 750 9049319
5. Genetic content of wild-type human cytomegalovirus. A Dolan C Cunningham R Hector A Hassan-Walker L Lee C Addison D Dargan D McGeoch D Gatherer V Emery P Griffiths C Sinzger B McSharry G Wilkinson A Davison, J Gen Virol 2004 85 1301 1312 10.1099/vir.0.79888-0 15105547 (Pubitemid 38659794)
6. Coding potential of laboratory and clinical strains of human cytomegalovirus. E Murphy D Yu J Grimwood J Schmutz M Dickson M Jarvis G Hahn J Nelson R Myers T Shenk, Proc Natl Acad Sci USA 2003 100 14976 14981 10.1073/pnas.2136652100 14657367 (Pubitemid 37518002)
7. Analysis of the protein-coding content of the sequence of human cytomegalovirus strain AD169. M Chee A Bankier S Beck R Bohni C Brown R Cerny T Horsnell Cr Hutchison T Kouzarides J Martignetti, Curr Top Microbiol Immunol 1990 154 125 169 2161319 (Pubitemid 20151030)
8. The human cytomegalovirus genome revisited: comparison with the chimpanzee cytomegalovirus genome. AJ Davison A Dolan P Akter C Addison DJ Dargan DJ Alcendor DJ McGeoch GS Hayward, J Gen Virol 2003 84 17 28 10.1099/vir.0.18606-0 12533697 (Pubitemid 36113546)
9. Human cytomegalovirus UL144 open reading frame: sequence hypervariability in low-passage clinical isolates. NS Lurain KS Kapell DD Huang JA Short J Paintsil E Winkfield CA Benedict CF Ware JW Bremer, J Virol 1999 73 10040 10050 10559318
10. gpUL73 (gN) genomic variants of human cytomegalovirus isolates are clustered into four distinct genotypes. S Pignatelli P Dal Monte M Landini, J Gen Virol 2001 82 2777 2784 11602789 (Pubitemid 32998655)
11. A review of genetic differences between limited and extensively passaged human cytomegalovirus strains. M Prichard M Penfold G Duke R Spaete G Kemble, Rev Med Virol 2001 11 191 200 10.1002/rmv.315 11376481 (Pubitemid 32510202)
12. Sequence variability of the alpha-chemokine UL146 from clinical strains of human cytomegalovirus. A Hassan-Walker S Okwuadi L Lee P Griffiths V Emery, J Med Virol 2004 74 573 579 10.1002/jmv.20210 15484281 (Pubitemid 39426098)
13. Inter- and intragenic variations complicate the molecular epidemiology of human cytomegalovirus. L Rasmussen A Geissler M Winters, J Infect Dis 2003 187 809 819 10.1086/367900 12599055 (Pubitemid 36286942)
14. Genetic variability of the major histocompatibility complex class I homologue encoded by human cytomegalovirus leads to differential binding to the inhibitory receptor ILT2. M Valés-Gámez M Shiroishi K Maenaka H Reyburn, J Virol 2005 79 2251 2260 10.1128/JVI.79.4.2251-2260.2005 15681427 (Pubitemid 40204582)
15. Differentiation of human cytomegalovirus genotypes in immunocompromised patients on the basis of UL4 gene polymorphisms. M Bar C Shannon-Lowe A Geballe, J Infect Dis 2001 183 218 225 10.1086/317939 11110652 (Pubitemid 32066022)
16. Homology between the human cytomegalovirus RL11 gene family and human adenovirus E3 genes. A Davison P Akter C Cunningham A Dolan C Addison D Dargan A Hassan-Walker V Emery P Griffiths G Wilkinson, J Gen Virol 2003 84 657 663 10.1099/vir.0.18856-0 12604818 (Pubitemid 36267140)
17. Analysis of interstrain variation in cytomegalovirus glycoprotein B sequences encoding neutralization-related epitopes. S Chou K Dennison, J Infect Dis 1991 163 1229 1234 10.1093/infdis/163.6.1229 1709960
18. Human cytomegalovirus a sequence and UL144 variability in strains from infected children. JF Bale SJ Petheram M Robertson JR Murph G Demmler, J Med Virol 2001 65 90 96 10.1002/jmv.2006 11505449
19. Herpes simplex virus-1 entry into cells mediated by a novel member of the TNF/NGF receptor family. R Montgomery M Warner B Lum P Spear, Cell 1996 87 427 436 10.1016/S0092-8674(00)81363-X 8898196 (Pubitemid 26374317)
20. Translational effects of mutations and polymorphisms in a repressive upstream open reading frame of the human cytomegalovirus UL4 gene. J Alderete S Jarrahian A Geballe, J Virol 1999 73 8330 8337 10482583 (Pubitemid 29441694)
21. Shot-gun sequencing strategy for long-range genome mapping: a pilot study. E Zabarovsky V Kashuba B Pettersson N Petrov V Zakharyev R Gizatullin T Lebedeva V Bannikov E Pokrovskaya V Zabarovska, Genomics 1994 21 495 500 10.1006/geno.1994.1307 7959725 (Pubitemid 24189879)
22. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. P Chomczynski N Sacchi, Anal Biochem 1987 162 156 159 2440339 (Pubitemid 17064313)
23. Characterisation of transcripts from the human cytomegalovirus genes TRL7, UL20a, UL36, UL65, UL94, US3 and US34. G Scott B Barrell J Oram W Rawlinson, Virus Genes 2002 24 39 48 10.1023/A:1014033920070 11928987 (Pubitemid 34229611)
24. Novel transcripts of human cytomegalovirus clinical strain found by cDNA library screening. YP Ma Q Ruan YH Ji N Wang ML Li Y Qi R He ZR Sun GW Ren, Genetics and Molecular Research 2011 10 566 575 10.4238/vol10-2gmr1059 21491367
25. Human cytomegalovirus clinical isolates carry at least 19 genes not found in laboratory strains. T Cha E Tom G Kemble G Duke E Mocarski R Spaete, J Virol 1996 70 78 83 8523595 (Pubitemid 126508771)
26. Cutting edge: a novel viral TNF receptor superfamily member in virulent strains of human cytomegalovirus. CA Benedict KD Butrovich NS Lurain J Corbeil I Rooney P Schneider J Tschopp CF Ware, J Immunol 1999 162 6967 6970 10358135 (Pubitemid 29277660)
27. The UL144 gene product of human cytomegalovirus activates NFkappaB via a TRAF6-dependent mechanism. E Poole C King J Sinclair A Alcami, EMBO J 2006 25 4390 4399 10.1038/sj.emboj.7601287 16932746 (Pubitemid 44435236)
28. Evolutionarily divergent herpesviruses modulate T cell activation by targeting the herpesvirus entry mediator cosignaling pathway. T Cheung I Humphreys K Potter P Norris H Shumway B Tran G Patterson R Jean-Jacques M Yoon P Spear K Murphy N Lurain C Benedict C Ware, Proc Natl Acad Sci USA 2005 102 13218 13223 10.1073/pnas.0506172102 16131544 (Pubitemid 41325004)
29. Selective induction of Th2-attracting chemokines CCL17 and CCL22 in human B cells by latent membrane protein 1 of Epstein-Barr virus. T Nakayama K Hieshima D Nagakubo E Sato M Nakayama K Kawa O Yoshie, J Virol 2004 78 1665 1674 10.1128/JVI.78.4.1665-1674.2004 14747532 (Pubitemid 38176699)
30. TRAF6 is a critical mediator of signal transduction by the viral oncogene latent membrane protein 1. U Schultheiss S Püschner E Kremmer T Mak H Engelmann W Hammerschmidt A Kieser, EMBO J 2001 20 5678 5691 10.1093/emboj/20.20.5678 11598011 (Pubitemid 33010045)
31. Cytomegalovirus (CMV)-encoded UL144 (truncated tumor necrosis factor receptor) and outcome of congenital CMV infection. R Arav-Boger C Battaglia T Lazzarotto L Gabrielli J Zong G Hayward M Diener-West M Landini, J Infect Dis 2006 194 464 473 10.1086/505427 16845629 (Pubitemid 44162657)
32. Human cytomegalovirus UL144 gene polymorphisms in congenital infections. O Picone J Costa M Chaix Y Ville C Rouzioux M Leruez-Ville, J Clin Microbiol 2005 43 25 29 10.1128/JCM.43.1.25-29.2005 15634946 (Pubitemid 40096275)
33. Polymorphisms of the cytomegalovirus (CMV)-encoded tumor necrosis factor-alpha and beta-chemokine receptors in congenital CMV disease. R Arav-Boger R Willoughby R Pass J Zong W Jang D Alcendor G Hayward, J Infect Dis 2002 186 1057 1064 10.1086/344238 12355354 (Pubitemid 35177106)
34. Cytomegalovirus assembly protein nested gene family: four 3'-coterminal transcripts encode four in-frame, overlapping proteins. AR Welch LM McNally W Gibson, J Virol 1991 65 4091 4100 1649317
35. Analysis of the human cytomegalovirus genomic region from UL146 through UL147A reveals sequence hypervariability, genotypic stability, and overlapping transcripts. N Lurain A Fox H Lichy S Bhorade C Ware D Huang S Kwan E Garrity S Chou, Virol J 2006 3 4 10.1186/1743-422X-3-4 16409621
36. Transcriptional analysis of human cytomegalovirus and rat cytomegalovirus homologues of the M73/M73.5 spliced gene family. AA Scalzo CA Forbes LM Smith LC Loh, Archives of Virology 2009 154 65 75 10.1007/s00705-008-0274-8 19066712