Development and validation of a concentration method for the detection of influenza a viruses from large volumes of surface water

Applied and Environmental Microbiology

Volumn 77, Issue 11, 2011, Pages 3802-3808

  Deboosere, Nathalie ^a   Horm, Srey Viseth ^b   Pinon, Anthony ^a   Gachet, Jessica ^a   Coldefy, Chloé ^b   Buchy, Philippe ^b   Vialette, Michèle ^a  

^a INSTITUT PASTEUR DE LILLE   (France)

^b INSTITUT PASTEUR DU CAMBODGE   (Cambodia)

Author keywords

[No Author keywords available]

Indexed keywords

EFFICIENCY; GLASS; LAKES; RECOVERY; TISSUE CULTURE; VIRUSES; WATER FILTRATION; WOOL; YARN;

AVIAN INFLUENZA A; CONCENTRATION METHOD; DETECTION OF VIRUS; FILTRATION SYSTEMS; NATURALLY OCCURRING; RECOVERY EFFICIENCY; REVERSE TRANSCRIPTASES; THEORETICAL DETECTIONS;

RESERVOIRS (WATER);

ALCOHOL; ASSESSMENT METHOD; AVIAN INFLUENZA; CONCENTRATION (COMPOSITION); DETECTION METHOD; FILTER; FILTRATION; INFECTIOUS DISEASE; LAKE WATER; PATHOGENICITY; POLLUTION EFFECT; POLYMERASE CHAIN REACTION; POND; RAINWATER; RESERVOIR; SURFACE WATER; THEORETICAL STUDY; VIRUS; VOLUME;

FRANCE;

AVES; INFLUENZA A VIRUS;

EID: 79958265422     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02484-10     Document Type: Article

References (44)

1. AFNOR. 2005. NF EN 14476-antiseptiques et désinfectants chimiques. Essai virucide quantitatif de suspension pour les antiseptiques et désinfec- tants chimiques utilisés en médecine humaine. AFNOR, Paris, France.
2. AFNOR. 1996. XP T 90-451-essais des eaux. Recherche des Entérovirus. Méthode par concentration sur laine de verre et détection par culture cel- lulaire. AFNOR, Paris, France.
3. Brankston, G., L. Gitterman, Z. Hirji, C. Lemieux, and M. Gardam. 2007. Transmission of influenza A in human beings. Lancet Infect. Dis. 7:257-265
4. Brown, J., D. Swayne, R. Cooper, R. Burns, and D. Stallknecht. 2007. Persistence of H5 and H7 avian influenza viruses in water. Avian Dis. 51:285-289.
5. Bustin, S., et al. 2009. The MIQE guidelines: minimum information for publi- cation of quantitative real-time PCR experiments. Clin. Chem. 55:611-622.
6. Dubois, E., et al. 2002. Modified concentration method for the detection of enteric viruses on fruits and vegetables by reverse transcriptase-polymerase chain reaction or cell culture. J. Food Prot. 65:1962-1969.
7. Dubois, E., et al. 2007. Detection and quantification by real-time RT-PCR of hepatitis A virus from inoculated tap-waters, salad vegetables, and soft fruits: characterization of the method performances. Int. J. Food Microbiol. 117: 141-149.
8. Gantzer, C., A. Maul, J. M. Audic, and L. Schwartzbrod. 1998. Detection of infectious enteroviruses, enterovirus genomes, somatic coliphages, and bac- teroides fragilis phages in treated wastewater. Appl. Environ. Microbiol. 64:4307-4312.
9. Gantzer, C., S. Senouci, A. Maul, Y. Levi, and L. Schwartzbrod. 1997. Enterovirus genomes in wastewater: concentration on glass wool and glass powder and detection by RT-PCR. J. Virol. Methods 65:265-271.
10. Gassilloud, B., M. Duval, L. Schwartzbrod, and C. Gantzer. 2003. Recovery of feline calicivirus infectious particles and genome from water: comparison of two concentration techniques. Water Sci. Technol. 47:97-101.
11. Gerba, C. 1984. Applied and theoretical aspects of virus adsorption to sur- faces. Adv. Appl. Microbiol. 30:133-168.
12. Grimes, S. E. 2002. A basic laboratory manual for the small-scale production and testing of I-2 Newcastle disease vaccine, p. 136. In FAO Regional Office for Asia and the Pacific publication, Bangkok, Thailand.
13. Halvorson, D., et al. 1983. Epizootiology of avian influenza-simultaneous monitoring of sentinel ducks and turkeys in Minnesota. Avian Dis. 27:77-85
14. Hamilton, R. R. C., and R. V. Thurston. 1977. Trimmed Spearman-Karber method for estimating median lethal concentrations in toxicity bioassays. Environ. Sci. Technol. 11:714-719.
15. Hinshaw, V., R. Webster, and B. Turner. 1979. Water-bone transmission of influenza A viruses? Intervirology 11:66-68.
16. Ito, T., et al. 1995. Perpetuation of influenza A viruses in Alaskan waterfowl reservoirs. Arch. Virol. 140:1163-1172.
17. Karim, M., E. Rhodes, N. Brinkman, L. Wymer, and G. Fout. 2009. New electropositive filter for concentrating enteroviruses and noroviruses from large volumes of water. Appl. Environ. Microbiol. 75:2393-2399.
18. Khalenkov, A., W. Laver, and R. Webster. 2008. Detection and isolation of H5N1 influenza virus from large volumes of natural water. J. Virol. Methods 149:180-183.
19. Lambertini, E., et al. 2008. Concentration of enteroviruses, adenoviruses, and noroviruses from drinking water by use of glass wool filters. Appl. Environ. Microbiol. 74:2990-2996.
20. Langlet, J., F. Gaboriaud, C. Gantzer, and J. Duval. 2008. Impact of chemical and structural anisotropy on the electrophoretic mobility of spherical soft mul- tilayer particles: the case of bacteriophage MS2. Biophys. J. 94:3293-3312.
21. Lénès, D., et al. 2010. Assessment of the removal and inactivation of influ- enza viruses H5N1 and H1N1 by drinking water treatment. Water Res. 44:2473-2486.
22. Markwell, D., and K. Shortridge. 1982. Possible waterborne transmission and maintenance of influenza viruses in domestic ducks. Appl. Environ. Microbiol. 43:110-115.
23. Miller, G. L., M. A. Lauffer, and W. M. Stanley. 1944. Electrophoretic studies on PR8 influenza virus. J. Exp. Med. 80:549-559.
24. Munster, V., et al. 2007. Spatial, temporal, and species variation in preva- lence of influenza A viruses in wild migratory birds. PLoS Pathog. 3:61.
25. OIE. 2009, posting date. Summary of outbreaks of highly pathogenic avian influenza in Cambodia. OIE, Paris, France. http://www.oie.int/wahis/public.php?page=disease_outbreak_summary&summary_country=KHM&reportid=3768.
26. Reed, L. J., and L. H. Muench. 1938. A simple method of estimating fifty percent endpoints. Am. J. Hyg. 27:493-497.
27. Roepke, D., D. Halvorson, S. Goyal, and C. Kelleher. 1989. An adsorption- elution technique for the recovery of influenza virus from water. Avian Dis. 33:649-653.
28. Senouci, S., A. Maul, and L. Schwartzbrod. 1996. Comparison study on three protocols used to concentrate poliovirus type 1 from drinking water. Zen- tralbl. Hyg. Umweltmed. 198:307-317.
29. Sivanandan, V., D. Halvorson, E. Laudert, D. Senne, and M. Kumar. 1991. Isolation of H13N2 influenza A virus from turkeys and surface water. Avian Dis. 35:974-977.
30. Slomka, M. J., et al. 2007. Validated H5 Eurasian real-time reverse tran- scriptase-polymerase chain reaction and its application in H5N1 outbreaks in 2005-2006. Avian Dis. 51:373-377.
31. Sobsey, M., and J. Glass. 1984. Influence of water quality on enteric virus concentration by microporous filter methods. Appl. Environ. Microbiol. 47: 956-960.
32. Spackman, E., et al. 2002. Development of a real-time reserve transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. J. Clin. Microbiol. 40:3256-3260.
33. Stallknecht, D., M. Kearney, S. Shane, and P. Zwank. 1990. Effects of pH, temperature, and salinity on persistence of avian influenza viruses in water. Avian Dis. 34:412-418.
34. Stallknecht, D., S. Shane, M. Kearney, and P. Zwank. 1990. Persistence of avian influenza viruses in water. Avian Dis. 34:406-411.
35. Vilaginès, P., B. Sarette, G. Husson, and R. Vilagenes. 1993. Glass wool for virus concentration at ambient water pH level. Water Sci. Technol. 27:299-306.
36. Vong, S., S. Ly, S. Mardy, D. Holl, and P. Buchy. 2008. Environmental contamination during influenza A virus (H5N1) outbreaks, Cambodia, 2006. Emerg. Infect. Dis. 14:1303-1305.
37. Webby, R., R. Webster, and J. Richt. 2007. Influenza viruses in animal wildlife populations. Curr. Top. Microbiol. Immunol. 315:67-83.
38. Webster, R., W. Bean, O. Gorman, T. Chambers, and Y. Kawaoka. 1992. Evolution and ecology of influenza A viruses. Microbiol. Rev. 56:152-179
39. Webster, R., M. Yakhno, V. Hinshaw, W. Bean, and K. Murti. 1978. Intes- tinal influenza: replication and characterization of influenza viruses in ducks. Virology 84:268-278.
40. WHO. 2010, posting date. Confirmed human cases of avian influenza A(H5N1). WHO, Geneva, Switzerland. http://www.who.int/csr/disease/avian_influenza/country/en/.
41. WHO. 2007, posting date. Recommendations and laboratory procedures for detection of avian influenza (H5N1) in specimens from suspected human cases. WHO, Geneva, Switzerland. http://www.who.int/csr/disease/avian_influenza/guidelines/RecAIlabtestsAug07.pdf.
42. WHO. 2005, posting date. Recommended laboratory tests to identify avian influenza A virus in specimens from humans. WHO, Geneva, Switzerland. http://www.who.int/csr/disease/avian_influenza/guidelines/avian_labtests2.pdf.
43. WHO. 2002. WHO manual on animal influenza diagnosis and surveillance. WHO/CDS/CSR/NCS/2002.5 Rev. 1. WHO, Geneva, Switzerland.
44. Zhang, G., et al. 2006. Evidence of influenza a virus RNA in Siberian lake ice. J. Virol. 81:2538.