-
1
-
-
46949087998
-
Non-neutral processes drive the nucleotide composition of non-coding sequences in Drosophila
-
Haddrill P.R., Charlesworth B. Non-neutral processes drive the nucleotide composition of non-coding sequences in Drosophila. Biol. Lett. 2008, 4:438-441.
-
(2008)
Biol. Lett.
, vol.4
, pp. 438-441
-
-
Haddrill, P.R.1
Charlesworth, B.2
-
2
-
-
56649099178
-
Whole-genome mutational biases in bacteria
-
Lind P.A., Andersson D.I. Whole-genome mutational biases in bacteria. Proc. Natl. Acad. Sci. USA 2008, 105:17878-17883.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 17878-17883
-
-
Lind, P.A.1
Andersson, D.I.2
-
3
-
-
48249133274
-
A genome-wide view of the spectrum of spontaneous mutations in yeast
-
Lynch M., Sung W., Morris K., Coffey N., Landry C.R., Dopman E.B., Dickinson W.J., Okamoto K., Kulkarni S., Hartl D.L., Thomas W.K. A genome-wide view of the spectrum of spontaneous mutations in yeast. Proc. Natl. Acad. Sci. USA 2008, 105:9272-9277.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 9272-9277
-
-
Lynch, M.1
Sung, W.2
Morris, K.3
Coffey, N.4
Landry, C.R.5
Dopman, E.B.6
Dickinson, W.J.7
Okamoto, K.8
Kulkarni, S.9
Hartl, D.L.10
Thomas, W.K.11
-
4
-
-
57049097252
-
The spectra of point mutations in vertebrate genomes
-
Albrecht-Buehler G. The spectra of point mutations in vertebrate genomes. Bioessays 2009, 31:98-106.
-
(2009)
Bioessays
, vol.31
, pp. 98-106
-
-
Albrecht-Buehler, G.1
-
5
-
-
58449105125
-
The temporal dynamics of slightly deleterious mutations in Escherichia coli and Shigella spp.
-
Balbi K.J., Rocha E.P., Feil E.J. The temporal dynamics of slightly deleterious mutations in Escherichia coli and Shigella spp. Mol. Biol. Evol. 2009, 26:345-355.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 345-355
-
-
Balbi, K.J.1
Rocha, E.P.2
Feil, E.J.3
-
6
-
-
70349507538
-
A genome-wide view of Caenorhabditis elegans base-substitution mutation processes
-
Denver D.R., Dolan P.C., Wilhelm L.J., Sung W., Lucas-Lledo J.I., Howe D.K., Lewis S.C., Okamoto K., Thomas W.K., Lynch M., Baer C.F. A genome-wide view of Caenorhabditis elegans base-substitution mutation processes. Proc. Natl. Acad. Sci. USA 2009, 106:16310-16314.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 16310-16314
-
-
Denver, D.R.1
Dolan, P.C.2
Wilhelm, L.J.3
Sung, W.4
Lucas-Lledo, J.I.5
Howe, D.K.6
Lewis, S.C.7
Okamoto, K.8
Thomas, W.K.9
Lynch, M.10
Baer, C.F.11
-
7
-
-
74849090833
-
The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana
-
Ossowski S., Schneeberger K., Lucas-Lledo J.I., Warthmann N., Clark R.M., Shaw R.G., Weigel D., Lynch M. The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science 2010, 327:92-94.
-
(2010)
Science
, vol.327
, pp. 92-94
-
-
Ossowski, S.1
Schneeberger, K.2
Lucas-Lledo, J.I.3
Warthmann, N.4
Clark, R.M.5
Shaw, R.G.6
Weigel, D.7
Lynch, M.8
-
8
-
-
78049445172
-
Evidence that mutation is universally biased towards AT in bacteria
-
Hershberg R., Petrov D.A. Evidence that mutation is universally biased towards AT in bacteria. PLoS Genet. 2010, 6:e1001115.
-
(2010)
PLoS Genet.
, vol.6
-
-
Hershberg, R.1
Petrov, D.A.2
-
9
-
-
78049425463
-
Evidence of selection upon genomic GC-content in bacteria
-
Hildebrand F., Meyer A., Eyre-Walker A. Evidence of selection upon genomic GC-content in bacteria. PLoS Genet. 2010, 6:e1001107.
-
(2010)
PLoS Genet.
, vol.6
-
-
Hildebrand, F.1
Meyer, A.2
Eyre-Walker, A.3
-
10
-
-
75749103383
-
Rate, molecular spectrum, and consequences of human mutation
-
Lynch M. Rate, molecular spectrum, and consequences of human mutation. Proc. Natl. Acad. Sci. USA 2010, 107:961-968.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 961-968
-
-
Lynch, M.1
-
11
-
-
0026592966
-
8-Hydroxyguanine, an abundant form of oxidative DNA damage, causes G→T and A→C substitutions
-
Cheng K.C., Cahill D.S., Kasai H., NishimuraL S., Loeb A. 8-Hydroxyguanine, an abundant form of oxidative DNA damage, causes G→T and A→C substitutions. J. Biol. Chem. 1992, 267:166-172.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 166-172
-
-
Cheng, K.C.1
Cahill, D.S.2
Kasai, H.3
NishimuraL, S.4
Loeb, A.5
-
12
-
-
37549060396
-
Base-pairing properties of the oxidized cytosine derivative, 5-hydroxy uracil
-
Thiviyanathan V., Somasunderam A., Volk D.E., Hazra T.K., Mitra S., Gorenstein D.G. Base-pairing properties of the oxidized cytosine derivative, 5-hydroxy uracil. Biochem. Biophys. Res. Commun. 2008, 366:752-757.
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.366
, pp. 752-757
-
-
Thiviyanathan, V.1
Somasunderam, A.2
Volk, D.E.3
Hazra, T.K.4
Mitra, S.5
Gorenstein, D.G.6
-
13
-
-
0028810970
-
Deamination of cytosine-containing pyrimidine photodimers in UV-irradiated DNA. Significance for UV light mutagenesis
-
Barak Y., Cohen-Fix O., Livneh Z. Deamination of cytosine-containing pyrimidine photodimers in UV-irradiated DNA. Significance for UV light mutagenesis. J. Biol. Chem. 1995, 270:24174-24179.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 24174-24179
-
-
Barak, Y.1
Cohen-Fix, O.2
Livneh, Z.3
-
14
-
-
0019322245
-
DNA methylation and the frequency of CpG in animal DNA
-
Bird P. DNA methylation and the frequency of CpG in animal DNA. Nucleic Acids Res. 1980, 8:1499-1504.
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 1499-1504
-
-
Bird, P.1
-
15
-
-
77952342281
-
Molecular biology. Phylogeny of methylomes
-
Jeltsch A. Molecular biology. Phylogeny of methylomes. Science 2010, 328:837-838.
-
(2010)
Science
, vol.328
, pp. 837-838
-
-
Jeltsch, A.1
-
16
-
-
14844340751
-
Proton tunneling in DNA and its biological implications
-
Löwdin P.O. Proton tunneling in DNA and its biological implications. Rev. Mod. Phys. 1963, 35:724-732.
-
(1963)
Rev. Mod. Phys.
, vol.35
, pp. 724-732
-
-
Löwdin, P.O.1
-
17
-
-
0030047369
-
Spontaneous DNA mutations induced by proton transfer in the guanine-cytosine base pairs: an energetic perspective
-
Florián J., Leszczyński J. Spontaneous DNA mutations induced by proton transfer in the guanine-cytosine base pairs: an energetic perspective. J. Am. Chem. Soc. 1996, 118:3010-3017.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 3010-3017
-
-
Florián, J.1
Leszczyński, J.2
-
18
-
-
77749299067
-
Theoretical investigation of hydrogen atom transfer in the adenine-thymine base pair and its coupling with the electronic rearrangement. Concerted vs. stepwise mechanism
-
Villani G. Theoretical investigation of hydrogen atom transfer in the adenine-thymine base pair and its coupling with the electronic rearrangement. Concerted vs. stepwise mechanism. Chem. Phys. 2010, 12:2664-2669.
-
(2010)
Chem. Phys.
, vol.12
, pp. 2664-2669
-
-
Villani, G.1
-
19
-
-
0034700502
-
Pairing of isolated nucleic-acid bases in the absence of the DNA backbone
-
Nir E., Kleinermanns K., de Vries M.S. Pairing of isolated nucleic-acid bases in the absence of the DNA backbone. Nature 2000, 408:949-951.
-
(2000)
Nature
, vol.408
, pp. 949-951
-
-
Nir, E.1
Kleinermanns, K.2
de Vries, M.S.3
-
20
-
-
5644247374
-
Triplet (pi,pi) reactivity of the guanine-cytosine DNA base pair: benign deactivation versus double tautomerization via intermolecular hydrogen transfer
-
Blancafort L., Bertran J., Sodupe M. Triplet (pi,pi) reactivity of the guanine-cytosine DNA base pair: benign deactivation versus double tautomerization via intermolecular hydrogen transfer. J. Am. Chem. Soc. 2004, 126:12770-12771.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 12770-12771
-
-
Blancafort, L.1
Bertran, J.2
Sodupe, M.3
-
21
-
-
34547492394
-
Double proton transfer dynamics of model DNA base pairs in the condensed phase
-
Kwon O.-H., Zewail A.H. Double proton transfer dynamics of model DNA base pairs in the condensed phase. Proc. Natl. Acad. Sci. USA 2007, 104:8703-8708.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 8703-8708
-
-
Kwon, O.-H.1
Zewail, A.H.2
-
22
-
-
0033991967
-
Isochores and the evolutionary genomics of vertebrates
-
Bernardi G. Isochores and the evolutionary genomics of vertebrates. Gene 2000, 241:3-17.
-
(2000)
Gene
, vol.241
, pp. 3-17
-
-
Bernardi, G.1
-
23
-
-
0002690901
-
On the evolution of the base composition of DNA
-
Freese E. On the evolution of the base composition of DNA. J. Theor. Biol. 1962, 3:82-101.
-
(1962)
J. Theor. Biol.
, vol.3
, pp. 82-101
-
-
Freese, E.1
-
24
-
-
3643052747
-
On the genetic basis of variation and heterogeneity of DNA base composition
-
Sueoka N. On the genetic basis of variation and heterogeneity of DNA base composition. Proc. Natl. Acad. Sci. USA 1962, 48:582-592.
-
(1962)
Proc. Natl. Acad. Sci. USA
, vol.48
, pp. 582-592
-
-
Sueoka, N.1
-
25
-
-
0032884653
-
Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs
-
Jareborg N., Birney E., Durbin R. Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs. Genome Res. 1999, 9:815-824.
-
(1999)
Genome Res.
, vol.9
, pp. 815-824
-
-
Jareborg, N.1
Birney, E.2
Durbin, R.3
-
26
-
-
0038681901
-
DNA deamination mediates innate immunity to retroviral infection
-
Harris R.S., Bishop K.N., Sheehy A.M., Craig H.M., Petersen-Mahrt S.K., Watt I.N., Neuberger M.S., Malim M.H. DNA deamination mediates innate immunity to retroviral infection. Cell 2003, 113:803-809.
-
(2003)
Cell
, vol.113
, pp. 803-809
-
-
Harris, R.S.1
Bishop, K.N.2
Sheehy, A.M.3
Craig, H.M.4
Petersen-Mahrt, S.K.5
Watt, I.N.6
Neuberger, M.S.7
Malim, M.H.8
-
27
-
-
0038681023
-
Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts
-
Mangeat B., Turelli P., Caron G., Friedli M., Perrin L., Trono D. Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts. Nature 2003, 424:99-103.
-
(2003)
Nature
, vol.424
, pp. 99-103
-
-
Mangeat, B.1
Turelli, P.2
Caron, G.3
Friedli, M.4
Perrin, L.5
Trono, D.6
-
28
-
-
17644363649
-
Guanine-adenine bias: a general property of retroid viruses that is unrelated to host-induced hypermutation
-
Müller V., Bonhoeffer S. Guanine-adenine bias: a general property of retroid viruses that is unrelated to host-induced hypermutation. Trends Genet. 2005, 21:264-268.
-
(2005)
Trends Genet.
, vol.21
, pp. 264-268
-
-
Müller, V.1
Bonhoeffer, S.2
-
29
-
-
77956193448
-
ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
-
Darling A.E., Mau B., Perna N.T. progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 2010, 5:e11147.
-
(2010)
PLoS One
, vol.5
-
-
Darling, A.E.1
Mau, B.2
Perna, N.T.3
-
30
-
-
48349124258
-
High-throughput sequencing provides insights into genome variation and evolution in Salmonella typhi
-
Holt K.E., Parkhill J., Mazzoni C.J., Roumagnac P., Weill F.X., Goodhead I., Rance R., Baker S., Maskell D.J., Wain J., Dolecek C., Achtman M., Dougan G. High-throughput sequencing provides insights into genome variation and evolution in Salmonella typhi. Nat. Genet. 2008, 40:987-993.
-
(2008)
Nat. Genet.
, vol.40
, pp. 987-993
-
-
Holt, K.E.1
Parkhill, J.2
Mazzoni, C.J.3
Roumagnac, P.4
Weill, F.X.5
Goodhead, I.6
Rance, R.7
Baker, S.8
Maskell, D.J.9
Wain, J.10
Dolecek, C.11
Achtman, M.12
Dougan, G.13
|