SMETHILLIUM: Spatial normalization METHod for ILLumina InfinIUM HumanMethylation BeadChip

Bioinformatics

Volumn 27, Issue 12, 2011, Pages 1693-1695

  Sabbah, Camille ^a,b,c   Mazo, Gildas ^a,b,c   Paccard, Caroline ^a,b,c   Reyal, Fabien ^a,d   Hupé, Philippe ^a,b,c,d  

^a INSTITUT CURIE   (France)

^b INSERM U900   (France)

^c PSL RESEARCH UNIVERSITY   (France)

^d INSTITUT CURIE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DNA METHYLATION; DNA MICROARRAY; EVALUATION; GENETIC EPIGENESIS; HUMAN; METHODOLOGY; MOLECULAR PROBE;

DNA METHYLATION; EPIGENESIS, GENETIC; HUMANS; MOLECULAR PROBES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SOFTWARE;

EID: 79958165516     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr187     Document Type: Article

References (6)

1. Davis, S. and Bilke, S. (2010) An introduction to the methylumi package. Bioconductor package.
2. Edwards, D. (2003) Non-linear normalization and background correction in one-channel cDNA microarray studies. Bioinformatics, 19, 825-833.
3. Fan, J. and Gijbels, I. (1996) Local Polynomial Modelling and Its Applications. Chapman and Hall.
4. Illumina (2008) Beadstudio Methylation Module v3.2, User Guide. Illumina Inc., San Diego, CA, USA.
5. Stone, C.J. (1984) An asymptotically optimal window selection rule for kernel density estimates. Ann. Statist., 12, 1285-1297.
6. Weisenberger, D.J. et al. (2008) Comprehensive DNA methylation analysis on the illumina infinium assay platform. Illumina, Inc.