Buffy coat specimens remain viable as a DNA source for highly multiplexed genome-wide genetic tests after long term storage

Journal of Translational Medicine

Volumn 9, Issue , 2011, Pages

  Mychaleckyj, Josyf C ^a   Farber, Emily A ^a   Chmielewski, Jessica ^b   Artale, Jamie ^a   Light, Laney S ^c   Bowden, Donald W ^c   Hou, Xuanlin ^a   Marcovina, Santica M ^b  

^a UNIVERSITY OF VIRGINIA   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

^c WAKE FOREST SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGED; ARTICLE; BLOOD BUFFY COAT; DNA ISOLATION; FEMALE; GEL ELECTROPHORESIS; GENETIC ASSOCIATION; GENOTYPE; HUMAN; MALE; QUALITY CONTROL; SINGLE NUCLEOTIDE POLYMORPHISM; STORAGE; STORAGE TEMPERATURE; BLOOD SAMPLING; GENETIC SCREENING; GENETICS; HUMAN GENOME; METABOLISM; METHODOLOGY; MIDDLE AGED; STATISTICAL MODEL; TIME; TISSUE PRESERVATION;

DNA;

ADULT; AGED; AGED, 80 AND OVER; BLOOD BUFFY COAT; BLOOD SPECIMEN COLLECTION; DNA; FEMALE; GENETIC TESTING; GENOME, HUMAN; GENOME-WIDE ASSOCIATION STUDY; GENOTYPE; HUMANS; LINEAR MODELS; MALE; MIDDLE AGED; POLYMORPHISM, SINGLE NUCLEOTIDE; QUALITY CONTROL; TIME FACTORS; TISSUE PRESERVATION;

EID: 79958147233     PISSN: None     EISSN: 14795876     Source Type: Journal    
DOI: 10.1186/1479-5876-9-91     Document Type: Article

References (16)

1. Austin MA, Ordovas JM, Eckfeldt JH, Tracy R, Boerwinkle E, Lalouel JM, Printz M. Guidelines of the National Heart, Lung, and Blood Institute Working Group on Blood Drawing, Processing, and Storage for Genetic Studies. Am J Epidemiol 1996, 144:437-441.
2. Steinberg K, Beck J, Nickerson D, Garcia-Closas M, Gallagher M, Caggana M, Reid Y, Cosentino M, Ji J, Johnson D, et al. DNA banking for epidemiologic studies: a review of current practices. Epidemiology 2002, 13:246-254. 10.1097/00001648-200205000-00003, 11964924.
3. Madisen L, Hoar DI, Holroyd CD, Crisp M, Hodes ME. DNA banking: the effects of storage of blood and isolated DNA on the integrity of DNA. Am J Med Genet 1987, 27:379-390. 10.1002/ajmg.1320270216, 3605221.
4. Nederhand RJ, Droog S, Kluft C, Simoons ML, de Maat MP. Logistics and quality control for DNA sampling in large multicenter studies. J Thromb Haemost 2003, 1:987-991. 10.1046/j.1538-7836.2003.00216.x, 12871366.
5. Visvikis S, Schlenck A, Maurice M. DNA extraction and stability for epidemiological studies. Clin Chem Lab Med 1998, 36:551-555. 10.1515/CCLM.1998.094, 9806458.
6. Buse JB, Bigger JT, Byington RP, Cooper LS, Cushman WC, Friedewald WT, Genuth S, Gerstein HC, Ginsberg HN, Goff DC, et al. Action to Control Cardiovascular Risk in Diabetes (ACCORD) trial: design and methods. Am J Cardiol 2007, 99:21i-33i.
7. Gerstein HC, Miller ME, Byington RP, Goff DC, Bigger JT, Buse JB, Cushman WC, Genuth S, Ismail-Beigi F, Grimm RH, et al. Effects of intensive glucose lowering in type 2 diabetes. N Engl J Med 2008, 358:2545-2559.
8. Kingry C, Bastien A, Booth G, Geraci TS, Kirpach BR, Lovato LC, Margolis KL, Rosenberg Y, Sperl-Hillen JM, Vargo L, et al. Recruitment strategies in the Action to Control Cardiovascular Risk in Diabetes (ACCORD) trial. Am J Cardiol 2007, 99:68i-79i.
9. Gunderson KL, Steemers FJ, Ren H, Ng P, Zhou L, Tsan C, Chang W, Bullis D, Musmacker J, King C, et al. Whole-genome genotyping. Methods Enzymol 2006, 410:359-376.
10. Pezzolesi MG, Poznik GD, Mychaleckyj JC, Paterson AD, Barati MT, Klein JB, Ng DP, Placha G, Canani LH, Bochenski J, et al. Genome-wide association scan for diabetic nephropathy susceptibility genes in type 1 diabetes. Diabetes 2009, 58:1403-1410. 10.2337/db08-1514, 2682673, 19252134.
11. Sale MM, Mychaleckyj JC, Chen WM. Planning and executing a genome wide association study (GWAS). Methods Mol Biol 2009, 590:403-418. 10.1007/978-1-60327-378-7_25, 19763518.
12. Richardson AJ, Narendran N, Guymer RH, Vu H, Baird PN. Blood storage at 4 degrees C-factors involved in DNA yield and quality. J Lab Clin Med 2006, 147:290-294. 10.1016/j.lab.2006.01.005, 16750666.
13. Erkeller-Yuksel FM, Deneys V, Yuksel B, Hannet I, Hulstaert F, Hamilton C, Mackinnon H, Stokes LT, Munhyeshuli V, Vanlangendonck F, et al. Age-related changes in human blood lymphocyte subpopulations. J Pediatr 1992, 120:216-222. 10.1016/S0022-3476(05)80430-5, 1735817.
14. Jentsch-Ullrich K, Koenigsmann M, Mohren M, Franke A. Lymphocyte subsets' reference ranges in an age- and gender-balanced population of 100 healthy adults--a monocentric German study. Clin Immunol 2005, 116:192-197. 10.1016/j.clim.2005.03.020, 15993366.
15. Tani S, Nagao K, Anazawa T, Kawamata H, Furuya S, Takahashi H, Iida K, Matsumoto M, Washio T, Kumabe N, Hirayama A. Association of leukocyte subtype counts with coronary atherosclerotic regression following pravastatin treatment. Am J Cardiol 2009, 104:464-469. 10.1016/j.amjcard.2009.04.009, 19660595.
16. Rosinger S, Nutland S, Mickelson E, Varney MD, Boehm BO, Olsem GJ, Hansen JA, Nicholson I, Hilner JE, Perdue LH, et al. Collection and processing of whole blood for transformation of peripheral blood mononuclear cells and extraction of DNA: the Type 1 Diabetes Genetics Consortium. Clin Trials 2010, 7:S65-74. 10.1177/1740774510373493, 2917848, 20595244.