메뉴 건너뛰기




Volumn 13, Issue 3, 2011, Pages 463-473

Long target droplet polymerase chain reaction with a microfluidic device for high-throughput detection of pathogenic bacteria at clinical sensitivity

Author keywords

Bacteria; High throughput; Long target; Microfluidic; Pathogen detection; Polymerase chain reaction

Indexed keywords

16S RIBOSOMAL RNA; AMPLICONS; ANTIBIOTIC TREATMENT; BACTERIAL CELLS; CLINICAL APPLICATION; CONTINUOUS MODE; DETECTION LIMITS; DNA CONCENTRATION; DNA MICRO-ARRAY; EARLY DIAGNOSIS; GRAM-NEGATIVE PATHOGENS; HEATING PLATES; HIGH THROUGHPUT; HIGH-THROUGHPUT DETECTION; INFECTIOUS DISEASE; LONG TARGET; MAXIMAL THROUGHPUT; MICRO-FLUIDIC DEVICES; MICROARRAY TECHNOLOGIES; PATHOGEN DETECTION; PATHOGENIC BACTERIUM; PCR EFFICIENCY; PSEUDOMONAS AERUGINOSA; SAMPLE NUMBER; SINGLE REACTOR; SPECIES CLASSIFICATION; SPECIES IDENTIFICATION; SPEED-UPS; STAPHYLOCOCCUS AUREUS; TARGET SEQUENCES; TOTAL PROCESSING TIME; TRIANGULAR PRISM;

EID: 79958126754     PISSN: 13872176     EISSN: 15728781     Source Type: Journal    
DOI: 10.1007/s10544-011-9514-x     Document Type: Article
Times cited : (17)

References (37)
  • 2
    • 12244290582 scopus 로고    scopus 로고
    • Electrokinetically synchronized polymerase chain reaction microchip fabricated in polycarbonate
    • doi:10.1021/ac048758e
    • J. Chen, M. Wabuyele, H. Chen, D. Patterson, M. Hupert, H. Shadpour, D. Nikitopoulos, S. Soper, Electrokinetically synchronized polymerase chain reaction microchip fabricated in polycarbonate. Anal. Chem. 77(2), 658-666 (2005). doi:10.1021/ac048758e
    • (2005) Anal. Chem. , vol.77 , Issue.2 , pp. 658-666
    • Chen, J.1    Wabuyele, M.2    Chen, H.3    Patterson, D.4    Hupert, M.5    Shadpour, H.6    Nikitopoulos, D.7    Soper, S.8
  • 3
    • 62649124715 scopus 로고    scopus 로고
    • A micro circulating PCR chip using a suction-type membrane for fluidic transport
    • doi:10. 1007/s10544-008-9242-z
    • L.J. Chien, J.H. Wang, T.M. Hsieh, P.H. Chen, P.J. Chen, D.S. Lee, C.H. Luo, G.B. Lee, A micro circulating PCR chip using a suction-type membrane for fluidic transport. Biomed. Microdevices 11(2), 359-367 (2009). doi:10. 1007/s10544-008-9242-z
    • (2009) Biomed. Microdevices , vol.11 , Issue.2 , pp. 359-367
    • Chien, L.J.1    Wang, J.H.2    Hsieh, T.M.3    Chen, P.H.4    Chen, P.J.5    Lee, D.S.6    Luo, C.H.7    Lee, G.B.8
  • 4
    • 33845668439 scopus 로고    scopus 로고
    • Experimental study of continuous-flow polymerase chain reaction microfluidics based on polytetrafluoroethylene capillary
    • Z. Chunsun, X. Jinliang, W. Jianqin, W. Hanping, Experimental study of continuous-flow polymerase chain reaction microfluidics based on polytetrafluoroethylene capillary. Chin. J. Anal. Chem. 34(8), 1197-1202 (2006)
    • (2006) Chin. J. Anal. Chem. , vol.34 , Issue.8 , pp. 1197-1202
    • Chunsun, Z.1    Jinliang, X.2    Jianqin, W.3    Hanping, W.4
  • 5
    • 54349094547 scopus 로고    scopus 로고
    • Flow-induced thermal effects on spatial DNA melting
    • doi:10.1039/b807034b
    • N. Crews, T. Ameel, C. Wittwer, B. Gale, Flow-induced thermal effects on spatial DNA melting. Lab Chip 8(11), 1922-1929 (2008). doi:10.1039/b807034b
    • (2008) Lab Chip , vol.8 , Issue.11 , pp. 1922-1929
    • Crews, N.1    Ameel, T.2    Wittwer, C.3    Gale, B.4
  • 6
    • 0037233259 scopus 로고    scopus 로고
    • Continuous segmented-flow polymerase chain reaction for high-throughput miniaturized DNA amplification
    • doi:10.1021/ac0204146
    • M. Curcio, J. Roeraade, Continuous segmented-flow polymerase chain reaction for high-throughput miniaturized DNA amplification. Anal. Chem. 75(1), 1-7 (2003). doi:10.1021/ac0204146
    • (2003) Anal. Chem. , vol.75 , Issue.1 , pp. 1-7
    • Curcio, M.1    Roeraade, J.2
  • 7
    • 20444390163 scopus 로고    scopus 로고
    • Contamination free continuous flow microfluidic polymerase chain reaction for quantitative and clinical applications
    • doi:10.1021/ac050031i
    • K. Dorfman, M. Chabert, J. Codarbox, G. Rousseau, P. de Cremoux, J. Viovy, Contamination free continuous flow microfluidic polymerase chain reaction for quantitative and clinical applications. Anal. Chem. 77(11), 3700-3704 (2005). doi:10.1021/ac050031i
    • (2005) Anal. Chem. , vol.77 , Issue.11 , pp. 3700-3704
    • Dorfman, K.1    Chabert, M.2    Codarbox, J.3    Rousseau, G.4    De Cremoux, P.5    Viovy, J.6
  • 9
    • 0032527233 scopus 로고    scopus 로고
    • Capillary tube resistive thermal cycling
    • N. Friedman, D. Meldrum, Capillary tube resistive thermal cycling. Anal. Chem. 70(14), 2997-3002 (1998)
    • (1998) Anal. Chem. , vol.70 , Issue.14 , pp. 2997-3002
    • Friedman, N.1    Meldrum, D.2
  • 10
    • 2542490465 scopus 로고    scopus 로고
    • Microfabricated flow-through device for DNA amplification - Towards in situ gene analysis
    • doi:10.1016/j.cej.2003.11.016. 7th International Conference on Microreaction Technology (IMRET 7), Lausanne, Switzerland, Sep 2003
    • T. Fukuba, T. Yamamoto, T. Naganuma, T. Fujii, Microfabricated flow-through device for DNA amplification - towards in situ gene analysis. Chem. Eng. J. 101(1-3), 151-156 (2004). doi:10.1016/j.cej.2003.11.016. 7th International Conference on Microreaction Technology (IMRET 7), Lausanne, Switzerland, Sep 2003
    • (2004) Chem. Eng. J. , vol.101 , Issue.1-3 , pp. 151-156
    • Fukuba, T.1    Yamamoto, T.2    Naganuma, T.3    Fujii, T.4
  • 11
    • 65449117600 scopus 로고    scopus 로고
    • Application of an asymmetric helical tube reactor for fast identification of gene transcripts of pathogenic viruses by micro flow-through PCR
    • doi:10.1007/s10544-008-9280-6
    • R. Hartung, A. Broesing, G. Sczcepankiewicz, U. Liebert, N. Haefner, M. Duerst, J. Felbel, D. Lassner, J.M. Koehler, Application of an asymmetric helical tube reactor for fast identification of gene transcripts of pathogenic viruses by micro flow-through PCR. Biomed. Microdevices 11(3), 685-692 (2009). doi:10.1007/s10544-008-9280-6
    • (2009) Biomed. Microdevices , vol.11 , Issue.3 , pp. 685-692
    • Hartung, R.1    Broesing, A.2    Sczcepankiewicz, G.3    Liebert, U.4    Haefner, N.5    Duerst, M.6    Felbel, J.7    Lassner, D.8    Koehler, J.M.9
  • 13
    • 33644970782 scopus 로고    scopus 로고
    • Fabrication and characterization of a PDMS-glass hybrid continuous-flow PCR chip
    • doi:10.1016/j.bej.2005.02.032. 10th Symposium of the Young-Asian- Biochemical-Engineers-Community (YABEC), Osaka City, Japan, 23-25 Sep 2004
    • J. Kim, J. Lee, S. Seong, S. Cha, S. Lee, J. Kim, T. Park, Fabrication and characterization of a PDMS-glass hybrid continuous-flow PCR chip. Biochem. Eng. J. 29(1-2), 91-97 (2006). doi:10.1016/j.bej.2005.02.032. 10th Symposium of the Young-Asian-Biochemical-Engineers-Community (YABEC), Osaka City, Japan, 23-25 Sep 2004
    • (2006) Biochem. Eng. J. , vol.29 , Issue.1-2 , pp. 91-97
    • Kim, J.1    Lee, J.2    Seong, S.3    Cha, S.4    Lee, S.5    Kim, J.6    Park, T.7
  • 14
    • 0033743165 scopus 로고    scopus 로고
    • Monolithic integrated microfluidic DNA amplification and capillary electrophoresis analysis system
    • E. Lagally, P. Simpson, R. Mathies, Monolithic integrated microfluidic DNA amplification and capillary electrophoresis analysis system. Sens. Actuators B Chem. 63(3), 138-146 (2000)
    • (2000) Sens. Actuators B Chem. , vol.63 , Issue.3 , pp. 138-146
    • Lagally, E.1    Simpson, P.2    Mathies, R.3
  • 15
    • 57849133899 scopus 로고    scopus 로고
    • Rapid detection of genetically modified organisms on a continuous-flow polymerase chain reaction microfluidics
    • doi:10.1016/j.ab.2008.10.028
    • Y. Li, D. Xing, C. Zhang, Rapid detection of genetically modified organisms on a continuous-flow polymerase chain reaction microfluidics. Anal. Biochem. 385(1), 42-49 (2009). doi:10.1016/j.ab.2008.10.028
    • (2009) Anal. Biochem. , vol.385 , Issue.1 , pp. 42-49
    • Li, Y.1    Xing, D.2    Zhang, C.3
  • 17
    • 77952891482 scopus 로고    scopus 로고
    • An integrated disposable device for DNA extraction and helicase dependent amplification
    • doi:10.1007/s10544-009-9391-8
    • M. Mahalanabis, J. Do, H. ALMuayad, J.Y. Zhang, C.M. Klapperich, An integrated disposable device for DNA extraction and helicase dependent amplification. Biomed. Microdevices 12(2), 353-359 (2010). doi:10.1007/s10544- 009-9391-8
    • (2010) Biomed. Microdevices , vol.12 , Issue.2 , pp. 353-359
    • Mahalanabis, M.1    Do, J.2    ALMuayad, H.3    Zhang, J.Y.4    Klapperich, C.M.5
  • 18
    • 0022965004 scopus 로고
    • Specific enzymatic amplification of DNA in vitro: The polymerase chain reaction
    • PubMed:3472723
    • K. Mullis, F. Faloona, S. Scharf, R. Saiki, G. Horn, H. Erlich, Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. Cold Spring Harbor Symp. Quant. Biol. 51(Pt 1), 263-273 (1986). [PubMed:3472723]
    • (1986) Cold Spring Harbor Symp. Quant. Biol. , vol.51 , Issue.PART 1 , pp. 263-273
    • Mullis, K.1    Faloona, F.2    Scharf, S.3    Saiki, R.4    Horn, G.5    Erlich, H.6
  • 19
    • 0037439263 scopus 로고    scopus 로고
    • Microfabricated device for DNA and RNA amplification by continuous-flow polymerase chain reaction and reverse transcription-polymerase chain reaction with cycle number selection
    • doi:10.1021/ac0260239
    • P. Obeid, T. Christopoulos, H. Crabtree, C. Backhouse, Microfabricated device for DNA and RNA amplification by continuous-flow polymerase chain reaction and reverse transcription-polymerase chain reaction with cycle number selection. Anal. Chem. 75(2), 288-295 (2003). doi:10.1021/ac0260239
    • (2003) Anal. Chem. , vol.75 , Issue.2 , pp. 288-295
    • Obeid, P.1    Christopoulos, T.2    Crabtree, H.3    Backhouse, C.4
  • 20
    • 36349005211 scopus 로고    scopus 로고
    • Continuous flow separations in microfluidic devices
    • doi:10.1039/b712784g
    • N. Pamme, Continuous flow separations in microfluidic devices. Lab Chip 7(12), 1644-1659 (2007). doi:10.1039/b712784g
    • (2007) Lab Chip , vol.7 , Issue.12 , pp. 1644-1659
    • Pamme, N.1
  • 21
    • 1542285881 scopus 로고    scopus 로고
    • Surface effects on PCR reactions in multichipmicrofluidic platforms
    • N. Panaro, X. Lou, P. Fortina, L. Kricka, P. Wilding, Surface effects on PCR reactions in multichipmicrofluidic platforms. Biomed. Microdevices 6(1), 75-80 (2004)
    • (2004) Biomed. Microdevices , vol.6 , Issue.1 , pp. 75-80
    • Panaro, N.1    Lou, X.2    Fortina, P.3    Kricka, L.4    Wilding, P.5
  • 22
    • 0242322735 scopus 로고    scopus 로고
    • Cylindrical compact thermal-cycling device for continuous-flow polymerase chain reaction
    • doi:10.1021/ac0346959
    • N. Park, S. Kim, J. Hahn, Cylindrical compact thermal-cycling device for continuous-flow polymerase chain reaction. Anal. Chem. 75(21), 6029-6033 (2003). doi:10.1021/ac0346959
    • (2003) Anal. Chem. , vol.75 , Issue.21 , pp. 6029-6033
    • Park, N.1    Kim, S.2    Hahn, J.3
  • 23
    • 77952889848 scopus 로고    scopus 로고
    • Glass-composite prototyping for flow PCR with in situ DNA analysis
    • doi:10.1007/s10544-009-9389-2
    • I. Pjescic, C. Tranter, P.L. Hindmarsh, N.D. Crews, Glass-composite prototyping for flow PCR with in situ DNA analysis. Biomed. Microdevices 12(2), 333-343 (2010). doi:10.1007/s10544-009-9389-2
    • (2010) Biomed. Microdevices , vol.12 , Issue.2 , pp. 333-343
    • Pjescic, I.1    Tranter, C.2    Hindmarsh, P.L.3    Crews, N.D.4
  • 24
    • 70549099740 scopus 로고    scopus 로고
    • Real-time PCR array chip with capillary-driven sample loading and reactor sealing for point-of-care applications
    • doi:10.1007/s10544-009-9318-4
    • N. Ramalingam, H.B. Liu, C.C. Dai, Y. Jiang, H. Wang, Q. Wang, K.M. Hui, H.Q. Gong, Real-time PCR array chip with capillary-driven sample loading and reactor sealing for point-of-care applications. Biomed. Microdevices 11(5), 1007-1020 (2009). doi:10.1007/s10544-009-9318-4
    • (2009) Biomed. Microdevices , vol.11 , Issue.5 , pp. 1007-1020
    • Ramalingam, N.1    Liu, H.B.2    Dai, C.C.3    Jiang, Y.4    Wang, H.5    Wang, Q.6    Hui, K.M.7    Gong, H.Q.8
  • 25
    • 79958094141 scopus 로고    scopus 로고
    • Bethesda, Maryland, USA
    • W. Rasband, ImageJ. U.S. National Institutes of Health, Bethesda, Maryland, USA (1997-2009), http://rsb.info.nih.gov/ij/
    • (1997) ImageJ.
    • Rasband, W.1
  • 26
    • 70349303094 scopus 로고    scopus 로고
    • Low cost and manufacturable complete microTAS for detecting bacteria
    • doi:10.1039/b904854e
    • A.F. Sauer-Budge, P. Mirer, A. Chatterjee, C.M. Klapperich, D. Chargin, A. Sharon, Low cost and manufacturable complete microTAS for detecting bacteria. Lab Chip 9(19), 2803-2810 (2009). doi:10.1039/b904854e
    • (2009) Lab Chip , vol.9 , Issue.19 , pp. 2803-2810
    • Sauer-Budge, A.F.1    Mirer, P.2    Chatterjee, A.3    Klapperich, C.M.4    Chargin, D.5    Sharon, A.6
  • 27
    • 10744227060 scopus 로고    scopus 로고
    • Miniaturized flow-through PCR with different template types in a silicon chip thermocycler
    • doi:10.1039/b103846j
    • I. Schneegass, R. Brautigam, J. Kohler, Miniaturized flow-through PCR with different template types in a silicon chip thermocycler. Lab Chip 1(1), 42-49 (2001). doi:10.1039/b103846j
    • (2001) Lab Chip , vol.1 , Issue.1 , pp. 42-49
    • Schneegass, I.1    Brautigam, R.2    Kohler, J.3
  • 28
    • 0037095347 scopus 로고    scopus 로고
    • A heater-integrated transparent microchannel chip for continuous-flow PCR
    • K. Sun, A. Yamaguchi, Y. Ishida, S. Matsuo, H. Misawa, A heater-integrated transparent microchannel chip for continuous-flow PCR. Sens. Actuators B Chem. 84(2-3), 283-289 (2002)
    • (2002) Sens. Actuators B Chem. , vol.84 , Issue.2-3 , pp. 283-289
    • Sun, K.1    Yamaguchi, A.2    Ishida, Y.3    Matsuo, S.4    Misawa, H.5
  • 29
    • 70549112929 scopus 로고    scopus 로고
    • Performance of nanoliter-sized droplet-based microfluidic PCR
    • doi:10.1007/s10544-009-9324-6
    • F. Wang, M.A. Burns, Performance of nanoliter-sized droplet-based microfluidic PCR. Biomed. Microdevices 11(5), 1071-1080 (2009). doi:10.1007/s10544-009-9324-6
    • (2009) Biomed. Microdevices , vol.11 , Issue.5 , pp. 1071-1080
    • Wang, F.1    Burns, M.A.2
  • 30
    • 1942520935 scopus 로고    scopus 로고
    • Algorithm for the identification of bacterial pathogens in positive blood cultures by real-time LightCycler polymerase chain reaction (PCR) with sequence-specific probes
    • doi:10.1016/j.diagmicrobio.2003.11.005
    • N. Wellinghausen, B. Wirths, A. Franz, L. Karolyi, R. Marre, U. Reischl, Algorithm for the identification of bacterial pathogens in positive blood cultures by real-time LightCycler polymerase chain reaction (PCR) with sequence-specific probes. Diagn. Microbiol. Infect. Dis. 48(4), 229-241 (2004). doi:10.1016/j.diagmicrobio.2003.11.005
    • (2004) Diagn. Microbiol. Infect. Dis. , vol.48 , Issue.4 , pp. 229-241
    • Wellinghausen, N.1    Wirths, B.2    Franz, A.3    Karolyi, L.4    Marre, R.5    Reischl, U.6
  • 31
    • 69949087599 scopus 로고    scopus 로고
    • Diagnosis of bacteremia in whole-blood samples by use of a commercial universal 16S rRNA gene-based PCR and sequence analysis
    • doi:10.1128/JCM.00567-09
    • N. Wellinghausen, A.J. Kochem, C. Disque, H. Muehl, S. Gebert, J. Winter, J. Matten, S.G. Sakka, Diagnosis of bacteremia in whole-blood samples by use of a commercial universal 16S rRNA gene-based PCR and sequence analysis. J. Clin. Microbiol. 47(9), 2759-2765 (2009). doi:10.1128/JCM.00567-09
    • (2009) J. Clin. Microbiol. , vol.47 , Issue.9 , pp. 2759-2765
    • Wellinghausen, N.1    Kochem, A.J.2    Disque, C.3    Muehl, H.4    Gebert, S.5    Winter, J.6    Matten, J.7    Sakka, S.G.8
  • 33
    • 4644268878 scopus 로고    scopus 로고
    • Development and validation of a diagnostic DNA microarray to detect quinolone-resistant Escherichia coli among clinical isolates
    • doi:10.1128/JCM.42.9.4083-4091.2004
    • X. Yu, M. Susa, C. Knabbe, R. Schmid, T. Bachmann, Development and validation of a diagnostic DNA microarray to detect quinolone-resistant Escherichia coli among clinical isolates. J. Clin. Microbiol. 42(9), 4083-4091 (2004). doi:10.1128/JCM.42.9.4083-4091.2004
    • (2004) J. Clin. Microbiol. , vol.42 , Issue.9 , pp. 4083-4091
    • Yu, X.1    Susa, M.2    Knabbe, C.3    Schmid, R.4    Bachmann, T.5
  • 34
    • 34547839765 scopus 로고    scopus 로고
    • Miniaturized PCR chips for nucleic acid amplification and analysis: Latest advances and future trends
    • doi:10.1093/nar/gkm389
    • C. Zhang, D. Xing, Miniaturized PCR chips for nucleic acid amplification and analysis: latest advances and future trends. Nucleic Acids Res. 35(13), 4223-4237 (2007). doi:10.1093/nar/gkm389
    • (2007) Nucleic Acids Res. , vol.35 , Issue.13 , pp. 4223-4237
    • Zhang, C.1    Xing, D.2
  • 35
    • 77950827380 scopus 로고    scopus 로고
    • Microfluidic gradient PCR (MG-PCR): A new method for microfluidic DNA amplification
    • doi:10.1007/s10544-009-9352-2
    • C. Zhang, D. Xing, Microfluidic gradient PCR (MG-PCR): a new method for microfluidic DNA amplification. Biomed. Microdevices 12(1), 1-12 (2010). doi:10.1007/s10544-009-9352-2
    • (2010) Biomed. Microdevices , vol.12 , Issue.1 , pp. 1-12
    • Zhang, C.1    Xing, D.2
  • 36
    • 33645844551 scopus 로고    scopus 로고
    • PCR microfluidic devices for DNA amplification
    • doi:10.1016/j.biotechadv.2005.10.002
    • C. Zhang, J. Xu, W. Ma, W. Zheng, PCR microfluidic devices for DNA amplification. Biotechnol. Adv. 24(3), 243-284 (2006). doi:10.1016/j.biotechadv. 2005.10.002
    • (2006) Biotechnol. Adv. , vol.24 , Issue.3 , pp. 243-284
    • Zhang, C.1    Xu, J.2    Ma, W.3    Zheng, W.4
  • 37
    • 62649132171 scopus 로고    scopus 로고
    • Microfluidic DNA amplification-A review
    • doi:10.1016/j.aca.2009.02.038
    • Y. Zhang, P. Ozdemir, Microfluidic DNA amplification-A review. Anal. Chim. Acta 638(2), 115-125 (2009). doi:10.1016/j.aca.2009.02.038
    • (2009) Anal. Chim. Acta , vol.638 , Issue.2 , pp. 115-125
    • Zhang, Y.1    Ozdemir, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.