Cloning, expression, purification, crystallization and preliminary X-ray crystallo-graphic study of GK0767, the copper-containing nitrite reductase from Geobacillus kaustophilus

Acta Crystallographica Section F: Structural Biology and Crystallization Communications

Volumn 67, Issue 6, 2011, Pages 692-695

  Fukuda, Yohta ^a,b   Tamada, Taro ^b   Takami, Hideto ^c   Suzuki, Shinnichiro ^a   Inoue, Tsuyoshi ^a   Nojiri, Masaki ^a  

^a OSAKA UNIVERSITY   (Japan)

^b JAPAN ATOMIC ENERGY AGENCY   (Japan)

^c JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

copper; denitrification; Gram positive bacteria; nitrite reductases

Indexed keywords

NITRITE REDUCTASE; NITRITE REDUCTASE, COPPER CONTAINING; NITRITE REDUCTASE, COPPER-CONTAINING;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CRYSTALLIZATION; ENZYMOLOGY; GENE EXPRESSION; GEOBACILLUS; ISOLATION AND PURIFICATION; MOLECULAR CLONING; MOLECULAR GENETICS; SEQUENCE ALIGNMENT; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; GENE EXPRESSION; GEOBACILLUS; MOLECULAR SEQUENCE DATA; NITRITE REDUCTASES; SEQUENCE ALIGNMENT;

ESCHERICHIA COLI; GEOBACILLUS KAUSTOPHILUS; POSIBACTERIA;

EID: 79958107996     PISSN: 17443091     EISSN: 17443091     Source Type: Journal    
DOI: 10.1107/S1744309111013297     Document Type: Article

References (22)

1. Babu, M. M., Priya, M. L., Selvan, A. T., Madera, M., Gough, J., Aravind, L. & Sankaran, K. (2006). J. Bacteriol. 188, 2761-2773.
2. Boulanger, M. J. & Murphy, M. E. (2002). J. Mol. Biol. 315, 1111-1127.
3. Emanuelsson, O., Brunak, S., von Heijne, G. & Nielsen, H. (2007). Nature Protoc. 2, 953-971.
4. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
5. Evans, P. (2006). Acta Cryst. D62, 72-82.
6. Feng, L., Wang, W., Cheng, J., Ren, Y., Zhao, G., Gao, C., Tang, Y., Liu, X., Han, W., Peng, X., Liu, R. & Wang, L. (2007). Proc. Natl Acad. Sci. USA, 104, 5602-5607.
7. Gouet, P., Courcelle, E., Stuart, D. I. & Métoz, F. (1999). Bioinformatics, 15, 305-308.
8. Knowles, R. (1982). Microbiol. Rev. 46, 43-70.
9. Manachini, P. L., Mora, D., Nicastro, G., Parini, C., Stackebrandt, E., Pukall, R. & Fortina, M. G. (2000). Int. J. Syst. Evol. Microbiol. 50, 1331-1337.
10. Matthews, B. W. (1968). J. Mol. Biol. 33, 491-497.
11. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
12. McMullan, G., Christie, J. M., Rahman, T. J., Banat, I. M., Ternan, N. G. & Marchant, R. (2004). Biochem. Soc. Trans. 32, 214-217.
13. Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997). Acta Cryst. D53, 240-255.
14. Nazina, T. N., Tourova, T. P., Poltaraus, A. B., Novikova, E. V., Grigoryan, A. A., Ivanova, A. E., Lysenko, A. M., Petrunyaka, V. V., Osipov, G. A., Belyaev, S. S. & Ivanov, M. V. (2001). Int. J. Syst. Evol. Microbiol. 51, 433-446.
15. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
16. Suzuki, S., Kataoka, K., Yamaguchi, K., Inoue, T. & Kai, Y. (1999). Coord. Chem. Rev. 190-192, 245-265.
17. Takami, H., Inoue, A., Fuji, F. & Horikoshi, K. (1997). FEMS Microbiol. Lett. 152, 279-285.
18. Takami, H., Nishi, S., Lu, J., Shimamura, S. & Takaki, Y. (2004). Extremophiles, 8, 351-356.
19. Takami, H., Takaki, Y., Chee, G.-J., Nishi, S., Shimamura, S., Suzuki, H., Matsui, S. & Uchiyama, I. (2004). Nucleic Acids Res. 32, 6292-6303.
20. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). Nucleic Acids Res. 22, 4673-4680.
21. Winn, M. D. et al. (2011). Acta Cryst. D67, 235-242.
22. Zumft, W. G. (1997). Microbiol. Mol. Biol. Rev. 61, 533-616.