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Volumn 11, Issue 6, 2011, Pages 2045-2049

New route to local order models for disordered crystalline materials: Diffuse scattering and computational modeling of phloroglucinol dihydrate

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL MODELING; DIFFUSE SCATTERING; DIHYDRATES; FIRST-PRINCIPLES; LOCAL ORDER; MOLECULAR MATERIALS; PHLOROGLUCINOL; QUANTUM-MECHANICAL CALCULATION; SHORT RANGE ORDERS;

EID: 79958019262     PISSN: 15287483     EISSN: 15287505     Source Type: Journal    
DOI: 10.1021/cg101704h     Document Type: Article
Times cited : (10)

References (23)
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    • Oxford University Press
    • Welberry, T. R. Diffuse X-ray Scattering and Models of Disorder. IUCr Monographs on Crystallography; Oxford University Press: 2004.
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    • Welberry, T.R.1
  • 10
    • 37549039510 scopus 로고    scopus 로고
    • Data were collected on a Rigaku R-axis/RAPID image plate diffractometer equipped with an Oxford Cryosystems low temperature device. The structure was solved using SHELXS-97 and refined using SHELXL-97 ()
    • Data were collected on a Rigaku R-axis/RAPID image plate diffractometer equipped with an Oxford Cryosystems low temperature device. The structure was solved using SHELXS-97 and refined using SHELXL-97 (Sheldrick, G. M. Acta Crystallogr. 2008, A64, 112-122)
    • (2008) Acta Crystallogr. , vol.64 , pp. 112-122
    • Sheldrick, G.M.1
  • 11
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    • within the WinGX suite of programs
    • within the WinGX suite of programs (Farrugia, L. J. J. Appl. Crystallogr. 1999, 32, 837-838.
    • (1999) J. Appl. Crystallogr. , vol.32 , pp. 837-838
    • Farrugia, L.J.1
  • 12
    • 79958016832 scopus 로고    scopus 로고
    • o > 2σ(I), wR 2 = 0.1086 for 860 unique data (all data 4781). Crystallographic data have been deposited with the CCDC (CCDC-797470)
    • o > 2σ(I), wR 2 = 0.1086 for 860 unique data (all data 4781). Crystallographic data have been deposited with the CCDC (CCDC-797470).
  • 14
    • 79958008557 scopus 로고    scopus 로고
    • The CP2K developers group
    • The CP2K developers group, http://cp2k.berlios.de/, 2008).
    • (2008)
  • 15
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    • Calculations were performed using the PBE functional (;;)
    • Calculations were performed using the PBE functional (Perdew, J. P.; Burke, K.; Ernzerhof, M. Phys. Rev. Lett. 1996, 77, 3865)
    • (1996) Phys. Rev. Lett. , vol.77 , pp. 3865
    • Perdew, J.P.1    Burke, K.2    Ernzerhof, M.3
  • 16
    • 34648843516 scopus 로고    scopus 로고
    • coupled to a dual localized (Gaussian, double-zeta quality,)
    • coupled to a dual localized (Gaussian, double-zeta quality, VandeVondele, J.; Hutter, J. J. Chem. Phys. 2007, 127, 114105)
    • (2007) J. Chem. Phys. , vol.127 , pp. 114105
    • Vandevondele, J.1    Hutter, J.2
  • 17
    • 0000160164 scopus 로고    scopus 로고
    • plane-wave basis set description, optimized for use against the Goedecker-Teter-Hutter set of pseudopotentials (;;).
    • and plane-wave basis set description, optimized for use against the Goedecker-Teter-Hutter set of pseudopotentials (Goedecker, S.; Teter, M.; Hutter, J. Phys. Rev. B 1996, 54, 1703).
    • (1996) Phys. Rev. B , vol.54 , pp. 1703
    • Goedecker, S.1    Teter, M.2    Hutter, J.3
  • 18
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    • A series of single-point energy calculations determined the optimum energy cutoff (300 Ry), which converged the total energy to within 1 meV/atom. The subsequent geometry-optimization (atomic positions only) calculations were performed using the Broyden-Fletcher-Goldfarb-Shanno (BFGS) method.
    • A series of single-point energy calculations determined the optimum energy cutoff (300 Ry), which converged the total energy to within 1 meV/atom. The subsequent geometry-optimization (atomic positions only) calculations were performed using the Broyden-Fletcher-Goldfarb-Shanno (BFGS) method. Broyden, C. G. J. Institute Math. Appl. 1970, 6, 222
    • (1970) J. Institute Math. Appl. , vol.6 , pp. 222
    • Broyden, C.G.1
  • 21
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    • Note the failure of the PBE functional to model dispersion interactions is not so critical here, as all five models will be affected to the same degree (they all exhibit the same number of hydrogen bond interactions with very similar geometries). Therefore the relative energy differences between models will be the same, regardless of whether dispersion interactions are accounted for. These equilibrium structures provided the starting points for the MD simulations performed within the NVT ensemble, (maintained at 500K by a chain of Nose-Hoover thermostats) advancing in advancing in time increments of 0.55 fs until trajectories amounting to ca. 20 ps were obtained for each model
    • Note the failure of the PBE functional to model dispersion interactions is not so critical here, as all five models will be affected to the same degree (they all exhibit the same number of hydrogen bond interactions with very similar geometries). Therefore the relative energy differences between models will be the same, regardless of whether dispersion interactions are accounted for. These equilibrium structures provided the starting points for the MD simulations performed within the NVT ensemble, (maintained at 500K by a chain of Nose-Hoover thermostats) advancing in advancing in time increments of 0.55 fs until trajectories amounting to ca. 20 ps were obtained for each model.


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