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Volumn 696, Issue , 2011, Pages 287-295

Branch-and-bound approach for parsimonious inference of a species tree from a set of gene family trees

Author keywords

Comparative genomics; Evolution and phylogenetics

Indexed keywords

BRANCH AND BOUND ALGORITHM; CONFERENCE PAPER; EUKARYOTE; GENE DUPLICATION; GENE LOSS; GENE MUTATION; GENETIC ALGORITHM; MATHEMATICAL COMPUTING; MOLECULAR EVOLUTION; MULTIGENE FAMILY; PRIORITY JOURNAL; ALGORITHM; ARTICLE; BIOLOGICAL MODEL; BIOLOGY; COMPARATIVE STUDY; GENETIC DATABASE; PHYLOGENY; SPECIES DIFFERENTIATION;

EID: 79958007759     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4419-7046-6_29     Document Type: Conference Paper
Times cited : (8)

References (13)
  • 2
    • 52449122374 scopus 로고    scopus 로고
    • Gene family evolution by duplication, speciation and loss
    • C. Chauve, J.P. Doyon, and N. El-Mabrouk. Gene family evolution by duplication, speciation and loss. Journal of Computational Biology, 15(8):1043-1062, 2008.
    • (2008) Journal of Computational Biology , vol.15 , Issue.8 , pp. 1043-1062
    • Chauve, C.1    Doyon, J.P.2    El-Mabrouk, N.3
  • 3
    • 67650324396 scopus 로고    scopus 로고
    • New perspectives on gene family evolution: Losses in reconciliation and a link with supertrees
    • Research in Computational Molecular Biology, 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings Springer
    • C. Chauve and N. El-Mabrouk. New perspectives on gene family evolution: Losses in reconciliation and a link with supertrees. In Research in Computational Molecular Biology, 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings, volume 5541 of Lecture Notes in Computer Science, pages 46-58. Springer, 2009.
    • (2009) Lecture Notes in Computer Science , vol.5541 , pp. 46-58
    • Chauve, C.1    El-Mabrouk, N.2
  • 5
    • 0034178257 scopus 로고    scopus 로고
    • Homologya personal view on some of the problems
    • DOI 10.1016/S0168-9525(00)02005-9, PII S0168952500020059
    • W.M. Fitch. Homology a personal view on some of the problems. Trends in Genetics, 16:227-231, 2000. (Pubitemid 30216555)
    • (2000) Trends in Genetics , vol.16 , Issue.5 , pp. 227-231
    • Fitch, W.M.1
  • 6
    • 0000365320 scopus 로고
    • Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences
    • M. Goodman, J. Czelusniak, G.W. Moore, R.A. Herrera, and G. Matsuda. Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences. Systematic Zoology, 28:132-163, 1979.
    • (1979) Systematic Zoology , vol.28 , pp. 132-163
    • Goodman, M.1    Czelusniak, J.2    Moore, G.W.3    Herrera, R.A.4    Matsuda, G.5
  • 8
    • 0034938644 scopus 로고    scopus 로고
    • From gene trees to species trees
    • DOI 10.1137/S0097539798343362, PII S0097539798343362
    • B. Ma, M. Li, and L. Zhang. From gene trees to species trees. SIAM Journal on Computing, 30(3):729-752, 2000. (Pubitemid 32644732)
    • (2001) SIAM Journal on Computing , vol.30 , Issue.3 , pp. 729-752
    • Ma, B.1    Li, M.2    Zhang, L.3
  • 9
    • 0031774059 scopus 로고    scopus 로고
    • GeneTree: Comparing gene and species phylogenies using reconciled trees
    • R.D.M. Page. GeneTree: Comparing gene and species phylogenies using reconciled trees. Bioinformatics, 14(9):819-820, 1998. (Pubitemid 28552117)
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 819-820
    • Page, R.D.M.1
  • 10
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • DOI 10.1016/0025-5564(81)90043-2
    • D.F. Robinson and L.R. Foulds. Comparison of phylogenetic trees. Mathematical Biosciences, 53:131-147, 1981. (Pubitemid 11129084)
    • (1981) Mathematical Biosciences , vol.53 , Issue.1-2 , pp. 131-147
    • Robinson, D.F.1    Foulds, L.R.2
  • 11
    • 34248217100 scopus 로고    scopus 로고
    • Inferring angiosperm phylogeny from EST data with widespread gene duplication
    • M. Sanderson and M. Mcmahon. Inferring angiosperm phylogeny from EST data with widespread gene duplication. BMC Evolutionary Biology, 7:S3, 2007.
    • (2007) BMC Evolutionary Biology , vol.7
    • Sanderson, M.1    McMahon, M.2
  • 12
    • 46249126320 scopus 로고    scopus 로고
    • DupTree: A program for large-scale phylogenetic analyses using gene tree parsimony
    • DOI 10.1093/bioinformatics/btn230
    • A. Wehe, M.S. Bansal, J.G Burleigh, and O. Eulenstein. DupTree: A program for large-scale phylogenetic analyses using gene tree parsimony. Bioinformatics, 24(13):1540-1541, 2008. (Pubitemid 351911710)
    • (2008) Bioinformatics , vol.24 , Issue.13 , pp. 1540-1541
    • Wehe, A.1    Bansal, M.S.2    Burleigh, J.G.3    Eulenstein, O.4
  • 13
    • 0030762443 scopus 로고    scopus 로고
    • On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies
    • L. Zhang. On aMirkin-Muchnik-Smith conjecture for comparing molecular phylogenies. Journal of Computational Biology, 4(2):177-187, 1997. (Pubitemid 27318314)
    • (1997) Journal of Computational Biology , vol.4 , Issue.2 , pp. 177-187
    • Zhang, L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.