Spoligotyping of clinical mycobacterium tuberculosis isolates from the state of minas gerais, Brazil

Memorias do Instituto Oswaldo Cruz

Volumn 106, Issue 3, 2011, Pages 267-273

  de Miranda, Silvana Spíndola ^a   da Carvalho, Silva Wânia ^a   Suffys, Philip Noel ^a   Kritski, Afrânio Lineu ^a   Oliveira, Martha ^a   Zarate, Noemi ^a   Zozio, Thierry ^a   Rastogi, Nalin ^a   Gicquel, Brigitte ^a  

^a FEDERAL UNIVERSITY OF MINAS GERAIS   (Brazil)

Author keywords

Brazil; Minas gerais; Mycobacterium tuberculosis; Spoligotyping

Indexed keywords

MYCOBACTERIUM TUBERCULOSIS; MYCOBACTERIUM TUBERCULOSIS COMPLEX;

EID: 79957960066     PISSN: 00740276     EISSN: 16788060     Source Type: Journal    
DOI: 10.1590/s0074-02762011000300003     Document Type: Article

References (25)

1. Brudey K, Driscoll JR, Rigouts L, Prodinger WM, Gori A, Al-Hajoj SA, Allix C, Aristimuño L, Arora J, Baumanis V, Binder L, Cafrune P, Cataldi A, Cheong S, Diel R, Ellermeier C, Evans JT, Fauville-Dufaux M, Ferdinand S, Garcia de Viedma D, Garzelli C, Gazzola L, Gomes HM, Guttierez MC, Hawkey PM, van Helden PD, Kadival GV, Kreiswirth BN, Kremer K, Kubin M, Kulkarni SP, Liens B, Lillebaek T, Ho ML, Martin C, Martin C, Mokrousov I, Narvskaïa O, Ngeow YF, Naumann L, Niemann S, Parwati I, Rahim Z, Rasolofo-Razanamparany V, Rasolonavalona T, Rossetti ML, Rüsch-Gerdes S, Sajduda A, Samper S, Shemyakin IG, Singh UB, Somoskovi A, Skuce RA, van Soolingen D, Streicher EM, Suffys PN, Tortoli E, Tracevska T, Vincent V, Victor TC, Warren RM, Yap SF, Zaman K, Portaels F, Rastogi N, Sola C 2006. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol 6: 23.
2. Cafrune PI, Possuelo LG, Ribeiro AW, Ribeiro MO, Unis G, Jarczewski CA, Rossetti ML, Zaha A 2009. Prospective study applying spoligotyping directly to DNA from sputum sample of patients of having tuberculosis. Can J Microbiol 55: 895-900.
3. Canetti G, Rist N, Grosset J 1963. Measurement of sensitivity of the tuberculous bacillus to antibacillary drugs by the method of proportions. Methodology, resistance criteria, results and interpretation. Rev Tuberc Pneumol (Paris) 27: 217-272.
4. Cave MD, Eisenach KD, McDermott PF, Bates JH, Crawford JT 1991. IS6110: conservation of sequence in the Mycobacterium tuberculosis complex and its utilization in DNA fingerprinting. Mol Cell Probes 5: 73-80.
5. Dalla Costa ER, Ribeiro MO, Silva MS, Arnold LS, Rostirolla DC, Cafrune PI, Espinoza RC, Palaci M, Telles MA, Ritacco V, Suffys PN, Lopes ML, Campelo CL, Miranda SS, Kremer K, da Silva PE, Fonseca Lde S, Ho JL, Kritski AL, Rossetti ML 2009. Correlations of mutations in katG, oxyR-ahpC and inhA genes and in vitro susceptibility in Mycobacterium tuberculosis clinical strains segregated by spoligotype families from tuberculosis prevalent countries in South America. BMC Microbiology 19;9:39.
6. EU - European Union. European Concerted Action on New Generation Genetic Markers and Techniques for the Epidemiology and Control of Tuberculosis 2006. Beijing/W genotype Mycobacterium tuberculosis and drug resistance. Emerg Infect Dis 12: 736-743.
7. Filliol I, Ferdinand S, Sola C, Thonnon J, Rastogi N 2002. Spoligotyping and IS6110-RFLP typing of Mycobacterium tuberculosis from French Guiana: a comparison of results with international databases underlines interregional transmission from neighboring countries. Res Microbiol 153: 81-88.
8. Filliol I, Motiwala AS, Cavatore M, Qi W, Hazbon MH, Bobadilla del Valle M, Fyfe J, Garcia-Garcia L, Rastogi N, Sola C, Zozio T, Guerrero MI, Leon CI, Crabtree J, Angiuoli S, Eisenach KD, Durmaz R, Joloba ML, Rendon A, Sifuentes-Osornio J, Ponce de Leon A, Cave MD, Fleischmann R, Whittam TS, Alland D 2006. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol 18: 759-772.
9. Glynn JR, Whiteley J, Bifani PJ, Kremer K, van Soolingen D 2002. Worldwide occurrence of Beijing/W strains of Mycobacterium tuberculosis: a systematic review. Emerg Infect Dis 8: 843-849.
10. Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, Kuijper S, Bunschoten A, Molhuizen H, Shaw R, Goyal M, van Embden J 1997. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 35: 907-914.
11. Kremer K, van Soolingen D, Frothingham R, Haas WH, Hermans PW, Martín C, Palittapongarnpim P, Plikaytis BB, Riley LW, Yakrus MA, Musser JM, van Embden JD 1999. Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility. J Clin Microbiol 37: 2607-2618.
12. Lan NT, Lien HT, Tung le B, Borgdorff MW, Kremer K, van Soolingen D 2003. Mycobacterium tuberculosis Beijing genotype and risk for treatment failure and relapse, Vietnam. Emerg Infect Dis 9: 1633-1635.
13. Malaspina AC, Cavalcanti HR, Leite CQ, Machado SM, Viana BH, Silva RM, Hage EF, Figueiredo WM, Marques E, Ferrazoli L, Arbex M, Lessi M, Fonseca LS, Rigouts L, Saad MH 2008. Usefulness of Mycobacterium tuberculosis molecular typing in a tuberculosis low-endemic agro-industrial setting of Brazil. Jpn J Infect Dis 61: 231-233.
14. Marais BJ, Victor TC, Hesseling AC, Barnard M, Jordaan A, Brittle W, Reuter H, Beyers N, van Helden PD, Warren RM, Schaaf HS 2006. Beijing and Haarlem genotypes are overrepresented among children with drug-resistant tuberculosis in the Western Cape province of South Africa. J Clin Microbiol 44: 3539-3543.
15. MS - Ministério da Saúde 2003. Secretaria de Vigilância em Saúde. Departamento de Vigilância Epidemiológica. Coordenação Geral de Doenças Endêmicas. Área Técnica de Pneumologia Sanitária. Programa Nacional de Controle da Tuberculose [cited 2003 Nov 3]. Available from: www.opas.org.br/prevencao/site/UploadArq/ProgramaTB.pdf.
16. MS - Ministério da Saúde 2007. Sistema de Vigilância em Saúde. Centro de Referência Professor Hélio Fraga. Projeto MSH. Informe Técnico. Sistema de vigilância epidemiológica multirresistente Boletim 1, 1994-2006. Rev Bras Pneumol Sanit 15: 39-46.
17. Noguti EN, Leite CQF, Malaspina AC, Santos ACB, Hirata RDC, Hirata MH, Mamizuka EM, Cardoso RF 2010. Genotyping of Mycobacterium tuberculosis isolates from a low-endemic setting in northwestern state of Paraná in Southern Brazil. Mem Inst Oswaldo Cruz 105: 779-785.
18. Prodinger WM 2007. Molecular epidemiology of tuberculosis: toy or tool? A review of the literature and examples from Central Europe. Wien Klin Wochenschr 119: 80-89.
19. Ritacco V, López B, Cafrune PI, Ferrazoli L, Suffys PN, Candia N, Vásquez L, Realpe T, Fernández J, Lima KV, Zurita J, Robledo J, Rossetti ML, Kritski AL, Telles MA, Palomino JC, Heersma H, van Soolingen D, Kremer K, Barrera L 2008. Mycobacterium tuberculosis strains of the Beijing genotype are rarely observed in tuberculosis patients in South America. Mem Inst Oswaldo Cruz 103: 489-492.
20. SBPT - Sociedade Brasileira de Pneumologia e Tisiologia 2009. III Diretrizes para Tuberculose da Sociedade Brasileira de Pneumologia e Tisiologia. J Bras Pneumol 35: 1018-1048.
21. Scholante Silva AB, Von Groll A, Félix C, Conceição FR, Spies FS, Scaini CJ, Rossetti ML, Borsuk S, Dellagostin OA, Almeida da Silva PE 2009. Clonal diversity of M. tuberculosis isolated in a sea port city in Brazil. Tuberculosis (Edinb) 89: 443-447.
22. Sola C, Filliol I, Gutierrez MC, Mokrousov I, Vincent V, Rastogi N 2001. Spoligotype database of Mycobacterium tuberculosis: biogeographic distribution of shared types and epidemiologic and phylogenetic perspectives. Emerg Infect Dis 7: 390-396.
23. Von Groll A, Martin A, Felix C, Prata PF, Honscha G, Portaels F, Vandame P, da Silva PE, Palomino JC 2010. Fitness study of the RDRio lineage and Latin American-Mediterranean family of Mycobacterium tuberculosis in the city of Rio Grande, Brazil. FEMS Immunol Med Microbiol 58: 119-127.
24. Vree M, Bui DD, Dinh NS, Nguyen VC, Borgdorff MW, Cobelens FG 2007. Tuberculosis trends, Vietnam. Emerg Infect Dis 13: 796-797.
25. WHO - World Health Organization 2006. Global tuberculosis control: surveillance, planning, financing, WHO, Geneva, 77 pp.