Scientific workflow design 2.0: Demonstrating streaming data collections in Kepler

Proceedings - International Conference on Data Engineering

Volumn , Issue , 2011, Pages 1296-1299

  Dou, Lei ^a   Zinn, Daniel ^a   McPhillips, Timothy ^a   Kohler, Sven ^a   Riddle, Sean ^a   Bowers, Shawn ^b   Ludäscher, Bertram ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b GONZAGA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONFIGURATION LANGUAGES; CONVENTIONAL DESIGN; DATA MODELS; DATA PROCESSING PIPELINES; GEOSCIENCES; HIERARCHICAL DATA; IN-SILICO; INSERTIONS AND DELETIONS; LINEAR STRUCTURES; MIDDLEWARE LAYER; SCIENTIFIC DATA; SCIENTIFIC WORKFLOWS; SOFTWARE COMPONENT; STREAMING DATA; WORK-FLOWS; WORKFLOW STRUCTURES;

BIOINFORMATICS; COMPUTER HARDWARE DESCRIPTION LANGUAGES; DATA PROCESSING; DATA REDUCTION; DESIGN; MIDDLEWARE; MODELS; PIPELINE PROCESSING SYSTEMS;

INFORMATION MANAGEMENT;

EID: 79957845107     PISSN: 10844627     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICDE.2011.5767938     Document Type: Conference Paper

References (13)

1. M. K. Anand, S. Bowers, and B. Lud̈ascher. Provenance browser: Displaying and querying scientific workflow provenance graphs. In ICDE, pages 1201-1204, 2010.
2. Biomoby. http://www.biomoby.org.
3. S. Callahan, J. Freire, E. Santos, C. Scheidegger, C. Silva, and H. Vo. VisTrails: visualization meets data management. In SIGMOD'06, pages 745-747. ACM, 2006. (Pubitemid 46946568)
4. D. Churches, G. Gombas, A. Harrison, J. Maassen, C. Robinson, M. Shields, I. Taylor, and I. Wang. Programming scientific and distributed workflow with Triana services. Concurrency and Computation: Practice and Experience, 18(10):1021-1037, 2006. (Pubitemid 44258496)
5. Comet project. http://comet.ucdavis.edu.
6. E. Deelman, G. Singh, M. Su, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, G. Berriman, J. Good, et al. Pegasus: A framework for mapping complex scientific workflows onto distributed systems. Scientific Programming, 13(3):219-237, 2005. (Pubitemid 43022937)
7. T. Fahringer, R. Prodan, R. Duan, F. Nerieri, S. Podlipnig, J. Qin, M. Siddiqui, H. Truong, A. Villazon, and M. Wieczorek. ASKALON: A Grid Application Development and Computing Environment. International Workshop on Grid Computing, pages 122-131, 2005. (Pubitemid 44549211)
8. C. Lin, S. Lu, X. Fei, D. Pai, and J. Hua. A task abstraction and mapping approach to the shimming problem in scientific workflows. In IEEE Intl. Conf. on Services Computing, Bangalore, India, 2009.
9. B. Lud̈ascher, I. Altintas, C. Berkley, D. Higgins, E. Jaeger, M. Jones, E. Lee, J. Tao, and Y. Zhao. Scientific workflow management and the Kepler system. Concurrency and Computation: Practice and Experience, 18(10):1039-1065, 2006. (Pubitemid 44258497)
10. T. McPhillips, S. Bowers, D. Zinn, and B. Lud̈ascher. Scientific workflow design for mere mortals. Future Generation Computer Systems, 25(5):541-551, 2009.
11. T. Oinn, M. Addis, J. Ferris, D. Marvin, M. Senger, M. Greenwood, T. Carver, K. Glover, M. Pocock, A. Wipat, and P. Li. Taverna: A tool for the composition and enactment of bioinformatics workflows. Bioinformatics Journal, 20(17), 2004.
12. D. Zinn, S. Bowers, and B. Lud̈ascher. Xml-based computation for scientific workflows. In ICDE'10, pages 812-815, 2010.
13. D. Zinn, S. Bowers, T. M. McPhillips, and B. Lud̈ascher. Scientific workflow design with data assembly lines. In WORKS'09, 2009.