-
1
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad,B.M. et al. (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics, 19, 185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
-
2
-
-
73149111923
-
Gene expression profiles classify human osteosarcoma xenografts according to sensitivity to doxorubicin, cisplatin, and ifosfamide
-
Bruheim,S. et al. (2009) Gene expression profiles classify human osteosarcoma xenografts according to sensitivity to doxorubicin, cisplatin, and ifosfamide. Clin. Cancer Res., 15, 7161-7169.
-
(2009)
Clin. Cancer Res.
, vol.15
, pp. 7161-7169
-
-
Bruheim, S.1
-
3
-
-
84973587732
-
A coefficient of agreement for nominal scales
-
Cohen,J. (1960) A coefficient of agreement for nominal scales. Educ. Psychol. Meas., 20, 37-46.
-
(1960)
Educ. Psychol. Meas.
, vol.20
, pp. 37-46
-
-
Cohen, J.1
-
4
-
-
33747887038
-
Analyzing micro-RNA expression using microarrays
-
Davison,T.S. et al. (2006) Analyzing micro-RNA expression using microarrays. Methods Enzymol., 411, 14-34.
-
(2006)
Methods Enzymol
, vol.411
, pp. 14-34
-
-
Davison, T.S.1
-
5
-
-
0036376993
-
Statistical methods for identifying genes with differential expression in replicated cDNA microarray experiments
-
Dudoit,S. et al. (2002) Statistical methods for identifying genes with differential expression in replicated cDNA microarray experiments. Stat. Sin., 12, 111-139.
-
(2002)
Stat. Sin.
, vol.12
, pp. 111-139
-
-
Dudoit, S.1
-
7
-
-
84965886444
-
The equivalence of weighted kappa and the intraclass correlation coefficient as measures of reliability
-
Fleiss,J.L. and Cohen,J. (1973) The equivalence of weighted kappa and the intraclass correlation coefficient as measures of reliability. Educ. Psychol. Meas., 33, 613-619.
-
(1973)
Educ. Psychol. Meas.
, vol.33
, pp. 613-619
-
-
Fleiss, J.L.1
Cohen, J.2
-
8
-
-
33645066726
-
Large sample standard errors of kappa and weighted kappa
-
Fleiss,J.L. et al. (1969) Large sample standard errors of kappa and weighted kappa. Psychol. Bull., 72, 323-327.
-
(1969)
Psychol. Bull.
, vol.72
, pp. 323-327
-
-
Fleiss, J.L.1
-
9
-
-
79957837916
-
-
FlexmiR™ MicroRNA Assay, MicroRNA Human Panel Instruction Manual for product # BG-FMIR-H20-8.0, Version A-2 (December)
-
FlexmiR™ MicroRNA Assay, MicroRNA Human Panel Instruction Manual for product # BG-FMIR-H20-8.0, Version A-2 (December 2007), pp. 18-20. Availabe at http://gauss.usouthal.edu/~bwang/pub/supp/beadsme/refs/FlexmiR_Human_Panel_Instructions-revA-2.pdf.
-
(2007)
, pp. 18-20
-
-
-
10
-
-
79957863619
-
-
FlexmiR™ MicroRNAAssay,MicroRNAHumanPanelInstructionManualforproduct # BG-FMIR-H20-8.0, Version B (March)
-
FlexmiR™ MicroRNAAssay,MicroRNAHumanPanelInstructionManualforproduct # BG-FMIR-H20-8.0, Version B (March 2008), pp. 20-23. Availabe at http://gauss.usouthal.edu/~bwang/pub/supp/beadsme/refs/FlexmiR.pdf.
-
(2008)
, pp. 20-23
-
-
-
11
-
-
41649119008
-
Distinctive microRNA signature of acute myeloid leukemia bearing cytoplasmic mutated nucleophosmin
-
Garzon,R. et al. (2008) Distinctive microRNA signature of acute myeloid leukemia bearing cytoplasmic mutated nucleophosmin. Proc. Natl Acad. Sci. USA, 105, 3945-3950.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 3945-3950
-
-
Garzon, R.1
-
12
-
-
0034921979
-
Testing for differentially-expressed genes by maximum likelihood analysis of microarray data
-
Ideker,T. et al. (2000)Testing for differentially-expressed genes by maximum likelihood analysis of microarray data. J. Comput. Biol., 7, 805-817.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 805-817
-
-
Ideker, T.1
-
13
-
-
0017360990
-
The measurement of observer agreement for categorical data
-
Landis,J.R. and Koch,G.G. (1973) The measurement of observer agreement for categorical data. Biometrics, 33, 159-174.
-
(1973)
Biometrics
, vol.33
, pp. 159-174
-
-
Landis, J.R.1
Koch, G.G.2
-
14
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines indicates that thousands of human genes are microRNA targets
-
Lewis,B.P. et al. (2005) Conserved seed pairing, often flanked by adenosines indicates that thousands of human genes are microRNA targets. Cell, 120, 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
-
15
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
-
Livak,K.J. and Schmittgen,T.D. (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods, 25, 402-408.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
16
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
Lu,J. et al. (2005) MicroRNA expression profiles classify human cancers. Nature, 435, 834-838.
-
(2005)
Nature
, vol.435
, pp. 834-838
-
-
Lu, J.1
-
17
-
-
48349095270
-
Using miRNAexpression data fort he study of humanc ancer
-
Mascellani,N. et al. (2008) Using miRNAexpression data fort he study of humanc ancer. MINERVA BIOTEC., 20, 23-30.
-
(2008)
MINERVA BIOTEC
, vol.20
, pp. 23-30
-
-
Mascellani, N.1
-
18
-
-
65249186793
-
The miR-17/92 polycistron is up-regulated in sonic hedgehogdriven medulloblastomas and induced by N-myc in sonic hedgehogtreated cerebellar neural precursors
-
Northcott,P.A. et al. (2009) The miR-17/92 polycistron is up-regulated in sonic hedgehogdriven medulloblastomas and induced by N-myc in sonic hedgehogtreated cerebellar neural precursors. Cancer Res., 69, 3249-3255.
-
(2009)
Cancer Res
, vol.69
, pp. 3249-3255
-
-
Northcott, P.A.1
-
19
-
-
60849111385
-
Impact of normalization on miRNA microarray expression profiling
-
Pradervand,S. et al. (2009) Impact of normalization on miRNA microarray expression profiling. RNA, 15, 493-501.
-
(2009)
RNA
, vol.15
, pp. 493-501
-
-
Pradervand, S.1
-
20
-
-
70349258646
-
A modified LOESS normalization applied to microRNA arrays: a comparative evaluation
-
Risso,D. et al. (2009) A modified LOESS normalization applied to microRNA arrays: a comparative evaluation. Bioinformatics, 25, 2685-2691.
-
(2009)
Bioinformatics
, vol.25
, pp. 2685-2691
-
-
Risso, D.1
-
21
-
-
0035684378
-
A model for measurement error for gene expression arrays
-
Rocke,D.M. and Durbin,B. (2001) A model for measurement error for gene expression arrays. J. Comput. Biol., 8, 557-569.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 557-569
-
-
Rocke, D.M.1
Durbin, B.2
-
22
-
-
0001072413
-
A two-component model for measurement error in analytical chemistry
-
Rocke,D.M. and Lorenzato,S. (1995) A two-component model for measurement error in analytical chemistry. Technometrics, 37, 176-184.
-
(1995)
Technometrics
, vol.37
, pp. 176-184
-
-
Rocke, D.M.1
Lorenzato, S.2
-
23
-
-
37349051019
-
Real-time PCR quantification of precursor and mature microRNA
-
Schmittgen,T.D. et al. (2008) Real-time PCR quantification of precursor and mature microRNA. Methods, 44, 31-38.
-
(2008)
Methods
, vol.44
, pp. 31-38
-
-
Schmittgen, T.D.1
-
24
-
-
75249103831
-
A personalized microRNA microarray normalization method using a logistic regression model
-
Wang,B. et al. (2010a) A personalized microRNA microarray normalization method using a logistic regression model. Bioinformatics, 26, 228-234.
-
(2010)
Bioinformatics
, vol.26
, pp. 228-234
-
-
Wang, B.1
-
25
-
-
70349287507
-
Estimating smooth distribution function in the presence of heteroscedastic measurement errors
-
Wang,X.F. et al. (2010b) Estimating smooth distribution function in the presence of heteroscedastic measurement errors. Comput. Stat. Data Anal., 54, 25-36.
-
(2010)
Comput. Stat. Data Anal.
, vol.54
, pp. 25-36
-
-
Wang, X.F.1
-
26
-
-
79951828031
-
Systematic evaluation of three microRNA profiling platforms: microarray, beads array, and quantitative real-time PCR array
-
Wang,B. et al. (2011) Systematic evaluation of three microRNA profiling platforms: microarray, beads array, and quantitative real-time PCR array. PLoS One, 6, e17167.
-
(2011)
PLoS One
, vol.6
-
-
Wang, B.1
-
27
-
-
79952904486
-
Deconvolution estimation in measurement error models: The r package decon
-
Wang,X. and Wang,B. (2011) Deconvolution estimation in measurement error models: The r package decon. J. Stat. Softw., 39, 1-24.
-
(2011)
J. Stat. Softw.
, vol.39
, pp. 1-24
-
-
Wang, X.1
Wang, B.2
-
28
-
-
34748837455
-
Systematic analysis of microRNAexpression of RNAextracted from fresh frozen and formalin-fixed paraffin-embedded samples
-
Xi,Y. et al. (2007) Systematic analysis of microRNAexpression of RNAextracted from fresh frozen and formalin-fixed paraffin-embedded samples. RNA, 13, 1668-1674.
-
(2007)
RNA
, vol.13
, pp. 1668-1674
-
-
Xi, Y.1
-
29
-
-
1342294092
-
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
-
Yang,Y.H. et al. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res., 30, e15.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Yang, Y.H.1
|