Erratum to: Genome-wide transcriptome and proteome analyses of tobacco psaA and psbA deletion mutants(Plant Mol Biol,10.1007/s11103-011-9731-y);Genome-wide transcriptome and proteome analyses of tobacco psaA and psbA deletion mutants

Plant Molecular Biology

Volumn 76, Issue 3-5, 2011, Pages 407-423

  Leelavathi, Sadhu ^a   Bhardwaj, Amit ^a   Kumar, Saravanan ^a   Dass, Abhishek ^a   Pathak, Ranjana ^a   Pandey, Shiv S ^b   Tripathy, Baishnab C ^b   Padmalatha, K V ^c   Dhandapani, Gurusamy ^c   Kanakachari, Mogilicherla ^c   Kumar, Polumetla Ananda ^c   Cella, Rino ^d   Reddy, V Siva ^a  

^a INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY ICGEB   (India)

^b JAWAHARLAL NEHRU UNIVERSITY   (India)

^c NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY   (India)

^d UNIVERSITY OF PAVIA   (Italy)

Author keywords

NEP and PEP RNA polymerases; Photosystem I and II (PSI and PSII); Plastome transformation; Retrograde and anterograde signals; ROS scavenging mechanisms; Transcriptomic and proteomic analysis

Indexed keywords

EMBRYOPHYTA; NICOTIANA TABACUM;

EID: 79957826671     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-011-9763-3     Document Type: Erratum

References (58)

1. Aprile A, Mastrangelo AM, De Leonardis AM, Galiba G, Roncaglia E, Ferrari F, De Bellis L, Turchi L, Giuliano G, Cattivelli L (2009) Transcriptional profiling in response to terminal drought stress reveals differential responses along the wheat genome. BMC Genomics 10: 279.
2. Baena-González E, Allahverdiyeva Y, Svab Z, Maliga P, Josse EM, Kuntz M, Mäenpää P, Aro EM (2003) Deletion of the tobacco plastid psbA gene triggers an upregulation of the thylakoid-associated NAD(P)H dehydrogenase complex and the plastid terminal oxidase (PTOX). Plant J 35: 704-716.
3. Baumgartner BJ, Rapp JC, Mullet JE (1993) Plastid genes encocling the transcription/translation apparatus are differentially transcribed early in barley chloroplast development. Evidence for selective stabilization of psbA mRNA. Plant Physiol 101: 781-791.
4. Benjamini Y, Hochberg Y (2000) On the adaptive control of the false discovery rate in multiple testing with independent statistics. J Educ Behav Stat 25: 60-83.
5. Bilger H-W, Schreiber U, Lange OL (1984) Determination of leaf heat resistance: comparative investigation of chlorophyll fluorescence changes and tissue necrosis methods. Oecologia 63: 256-262.
6. Bilgin DD, Zavala JA, Zhu J, Clough SJ, Ort DR, DeLucia EH (2010) Biotic stress globally downregulates photosynthesis genes. Plant Cell Env 33: 1597-1613.
7. Breusegem FV, Dat JF (2006) Reactive oxygen species in plant cell death. Plant Physiol 141: 384-390.
8. Bukhov NG, Sabat SC, Mohanty P (1990) Analysis of chorophyll a fluorescence changes in weak light in heat-treated Amaranthus chloroplasts. Photosynth Res 23: 81-87.
9. Cao J, Govindjee R (1990) Chlorophyll a fluorescence transient as an indicator of active and inactive photosystem II in thylakoid membranes. Biochim Biophys Acta 1015: 180-188.
10. Dubell AN, Mullet JE (1995) Differential transcription of pea chloroplast genes during light-induced leaf development: continuous far-red light activates chloroplast transcription. Plant Physiol 109: 105-112.
11. Ducruet J-M, Lemoine Y (1985) Increased heat sensitivity of the photosynthetic apparatus in triazine-resistant biotypes from different plant species. Plant Cell Physiol 26(3): 419-429.
12. Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 95: 14863-14868.
13. Elstner EF (1991) Mechanism of oxygen activation in different compartments of plant cells. In: Pell EJ, Steffen KL (eds) Active oxygen/oxidative stress and plant metabolism. American Society of Plant Physiology, Rockville, pp 13-25.
14. Fey V, Wagner R, Brautigam K, Pfannschmidt T (2005) Photosynthetic redox control of nuclear gene expression. J Exp Bot 56(416): 1491-1498.
15. Foyer CH, Noctor G (2009) Redox regulation in photosynthetic organisms: signaling, acclimation, and practical implications. Antioxid Redox Signal 11(4): 861-905.
16. Genty B, Briantais JM, Baker NR (1989) The relationship between the quantum yield of photosynthetic electron transport and quenching of chlorophyll fluorescence. Biochim Biophy Acta 990: 87-92.
17. Goksoyr J (1967) Evolution of eucaryotic cells. Nature 214: 1161.
18. Govindjee R (1995) Sixty-three years since Kautsky: chlorophyll a fluorescence. Aust J Plant Physiol 22: 131-160.
19. Govindjee R (2005) Announcement: Advances in photosynthesis and respiration, volume 19: 'chlorophyll a fluorescence: a signature of photosynthesis', edited by George C. Papageorgiou and Govindjee. Photosynth Res 83: 101-105.
20. Gupta SG, Heinen JL, Holaday AS, Burke JJ, Allen RD (1993) Increased resistance to oxidative stress in transgenic plants that overexpress chloroplastic Cu/Zn superoxide dismutase. Proc Natl Acad Sci USA 90: 1629-1633.
21. Hajdukiewicz PTJ, Allison LA, Maliga P (1997) The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids. EMBO J 16: 4041-4048.
22. Havaux M (1993) Characterization of thermal damage to the photosynthetic electron transport system in potato leaves. Plant Sci 94: 19-33.
23. Hihara YA, Kamei M, Kaplan KA, Ikeuchi M (2001) DNA microarray analysis of cyanobacterial gene expression during acclimation to high light. Plant Cell 13: 793-806.
24. Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions: B-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6: 3901-3907.
25. Kakizaki T, Matsumura H, Nakayama K, Che FS, Terauchi R, Inaba T (2009) Coordination of plastid protein import and nuclear gene expression by plastid-to-nucleus retrograde signaling. Plant Physiol 151(3): 1339-1353.
26. Kanesaki Y, Suzuki I, Allakhverdiev SI, Mikami K, Murata N (2002) Salt stress and hyperosmotic stress regulate the expression of different sets of genes in Synechocystis sp. PCC 6803. Biochem Biophys Res Commun 290: 339-348.
27. Khan MS, Hameed W, Nozoe M, Shiina T (2007) Disruption of the psbA gene by the copy correction mechanism reveals that the expression of plastid-encoded genes is regulated by photosynthesis activity. J Plant Res 120: 421-430.
28. Kleine T, Voigt C, Leister D (2009) Plastid signalling to the nucleus: messengers still lost in the mists? Trends Genet 25: 186-192.
29. Krause GH, Weis E (1991) Chlorophyll fluorescence and photosynthesis: the basics. Annu Rev Plant Physiol Plant Mol Biol 42: 313-349.
30. Lee KP, Kim C, Landgraf F, Apel K (2007) EXECUTER1 and EXECUTER2-dependent transfer of stress-related signals from the plastid to the nucleus of Arabidopsis thaliana. Proc Natl Acad Sci USA 104: 10270-10275.
31. Liere K, Börner T (2006) Transcription of plastid genes. In: Grasser KD (ed) Regulation of transcription in plants. Blackwell Publishing Ltd., Oxford, pp 184-224.
32. Makeen K, Suresh Babu G, Lavanya GR, Grard A (2007) Studies of chlorophyll content by different methods in black gram (Vigna mungo L.). Int J Agric Res 2: 651-654.
33. Mao X, Cai T, Olyarchuk JG, Wei L (2005) Automated genome annotation and pathway identification using the KEGG orthology (KO) as a controlled vocabulary. Bioinformatics 21: 3787-3793.
34. Martin W, Muller M (1998) The hydrogen hypothesis for the first eukaryote. Nature 392: 37-41.
35. Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, Leister D, Stoebe B, Hasegawa M, Penny D (2002) Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci USA 99: 12246-12251.
36. Mayfield SP, Taylor WC (1987) Chloroplast photooxidation inhibits the expression of a set of nuclear genes. Mol Gen Genet 208: 309-314.
37. Mittler R, Vanderauwera S, Gollery M, van Breusegem F (2004) Reactive oxygen gene network of plants. Trends Plant Sci 9: 490-498.
38. Mohammed GH, Binder WD, Gillies SL (1995) Chlorophyll fluorescence: a review of its practical forestry applications and instrumentation. Scand J Forest Res 10: 383-410.
39. Mou Z, Fan W, Dong X (2003) Inducers of plant systemic acquired resistance regulate NPR1 function through redox changes. Cell 113: 935-944.
40. Murashige T, Skoog FA (1962) A revised medium for rapid growth and bioassays with tobacco tissue culture. Plant Physiol 15: 473-497.
41. Pfannschmid T (2010) Plastidial retrograde signalling-a true "plastid factor" or just metabolite signatures? Trends Plant Sci 15(8): 427-435.
42. Price AH, Taylor A, Ripley SJ, Griffiths A, Trewavas AJ, Knight MR (1994) Oxidative signals in tobacco increase cytosolic calcium. Plant Cell 6: 1301-1310.
43. Reddy VS, Leelavathi S, Selvapandian A, Raman R, Giovanni F, Shukla V, Bhatnagar RK (2002) Analysis of chloroplast transformed tobacco plants with cry1Ia5 under rice psbA transcriptional elements reveal high level expression of Bt toxin without imposing yield penalty and stable inheritance of transplastome. Mol Breed 9: 259-269.
44. Rodermel S (1999) Subunit control of Rubisco biosynthesis: a relic of an endosymbiotic past? Photosynth Res 59: 105-123.
45. Ruepp A, Zollner A, Maier D, Albermann K, Hani J, Mokrejs M, Tetko I, Guldener U, Mannhaupt G, Munsterkotter M, Mewes HW (2004) The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res 32: 5539-5545.
46. Sambrook J, Fritsch EF (1989) Molecular cloning. A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
47. Schmidt GW, Delaney SK (2010) Stable internal reference genes for normalization of real-time RT-PCR in tobacco (Nicotiana tabacum) during development and abiotic stress. Mol Genet Genomics 283: 233-241.
48. Schreiber U, Armond PA (1978) Heat-induced changes of chlorophyll fluorescence in isolated chloroplasts and related heat damage at the pigment level. Biochim Biophys Acta 502: 138-151.
49. Shikanai T, Endo T, Hashimoto T, Yamada Y, Asada K, Yokota A (1998) Directed disruption of the tobacco ndhB gene impairs cyclic electron flow around photosystem I. Proc Natl Acad Sci USA 95: 9705-9709.
50. Shikanai T, Shimizu K, Ueda K, Nishimura Y, Kuroiwa T, Hashimoto T (2001) The chloroplast clpP gene, encoding a proteolytic subunit of ATP-dependent protease, is indispensable for chloroplast development in tobacco. Plant Cell Physiol 42: 264-273.
51. Silhavy D, Maliga P (1998) Mapping of promoters for the nucleus-encoded plastid RNA polymerase (NEP) in the iojap maize mutant. Curr Genet 33: 340-344.
52. Suorsa M, Regel RE, Paakkarinen V, Battchikova N, Herrmann RG, Aro EM (2004) Protein assembly of photosystem II and accumulation of subcomplexes in the absence of low molecular mass subunits PsbL and PsbJ. Eur J Biochem 271: 96-107.
53. Surpin M, Larkin RM, Chory J (2002) Signal transduction between the chloroplast and the nucleus. Plant Cell 14(Suppl.): S327-S338.
54. Suzuki I, Kanesaki Y, Mikami K, Kanehisa M, Murata N (2001) Cold-regulated genes under control of the cold sensor Hik33 in Synechocystis. Mol Microbiol 40: 235-244.
55. Tada Y, Spoel SH, Pajerowska-Mukhtar K, Mou ZL, Song JQ, Wang C, Zuo JR, Dong XN (2008) Plant immunity requires conformational charges of NPR1 via S-nitrosylation and thioredoxins. Science 321: 952-956.
56. Woodson JD, Chory J (2008) Coordination of gene expression between organellar and nuclear genomes. Nature Rev Genet 9: 383-395.
57. Wu J, Mao X, Cai T, Luo J, Wei L (2006) KOBAS server: a webbased platform for automated annotation and pathway identification. Nucleic Acids Res 34: W720-W724.
58. Yamane Y, Kashino Y, Koike H, Satoh K (1997) Increases in the fluorescence Fo level and reversible inhibition of photosystem II reaction center by high-temperature treatments in higher plants. Photosynth Res 52: 57-64.