A rapid quantitative real-time PCR-based DNA quantification assay coupled with species-assignment capabilities for two hybridizing macaca species

Folia Primatologica

Volumn 82, Issue 2, 2011, Pages 71-80

  Barr, A ^a   Premasuthan, A ^a   Satkoski, J ^a   Smith, D G ^a   George, D ^a   Kanthaswamy, S ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

DNA quantification; Long tailed macaques; Macaca fascicularis; Macaca mulatta; Rhesus macaques; Species identification; TaqMan TM assay

Indexed keywords

MICROSATELLITE DNA; STAT6 PROTEIN;

ANIMAL; ARTICLE; BLOOD; CHINA; DNA SEQUENCE; ECONOMICS; EVALUATION; GENETICS; HYBRIDIZATION; INDIA; INSTRUMENTATION; MACACA FASCICULARIS; MACACA MULATTA; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; REAL TIME POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM; SOUTHEAST ASIA; SPECIES DIFFERENCE;

ANIMALS; ASIA, SOUTHEASTERN; CHINA; HYBRIDIZATION, GENETIC; INDIA; MACACA FASCICULARIS; MACACA MULATTA; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; POLYMORPHISM, SINGLE NUCLEOTIDE; REAL-TIME POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPECIES SPECIFICITY; STAT6 TRANSCRIPTION FACTOR;

MACACA; MACACA FASCICULARIS; MACACA MULATTA;

EID: 79957822727     PISSN: 00155713     EISSN: None     Source Type: Journal    
DOI: 10.1159/000328124     Document Type: Article

References (24)

1. AESOP Project (2006). Trends in US primate importation for 11 years (1995-2005) compiled and ana-ly zed from live primate import declarat ions logged by the United States Fish and Wild life Service's LEMIS division. http://www.aesopproject.org/Primate-Trade-Imports.htm.
2. Bonhomme M, Cuartero S, et al. (2009). Assessing natural introgression in 2 biomedical model species, the rhesus macaque (Macaca mulatta) and the long-tailed macaque (Macaca fascicularis). Journal of Heredity 100: 158-169.
3. Degenhardt JD, de Candia P, et al. (2009). Copy number variation of CCL3-like genes affects rate of progression to simian-AIDS in Rhesus Macaques (Macaca mulatta). PLoS Genet 5: e1000346.
4. Evans JJ, Wictum EJ, et al. (2007). Real-time polymerase chain reaction quantification of canine DNA. Journal of Forensic Sciences 52: 93-96. (Pubitemid 46018427)
5. Falconer DS (1960). Introduction to Quantitative Genetics. New York, The Ronald Press Company.
6. Ferguson B, Street SL, et al. (2007). Single nucleotide polymorphisms (SNPs) distinguish Indian-origin and Chinese-origin rhesus macaques (Macaca mulatta). BMC Genomics 8: 43.
7. Fooden J (1995). Systematic review of Southeast Asian longtail macaques, Macaca fascicularis (Raffles 1821). Fieldiana Zoology 81: 1-206.
8. Fooden J (2000). Systematic review of the rhesus macaque, Macaca mulatta (Zimmermann, 1780). Fiel-diana Zoology New Series 96: 90-120.
9. Gibbs R, Rogers J, et al. (2007). Evolutionary and biomedical insights from the rhesus macaque genome. Science 316: 222-234. (Pubitemid 46633091)
10. Hajibabaei M, Singer GA, et al. (2007). DNA barcoding: how it complements taxonomy, molecular phy-logenetics and population genetics. Trends Genetics 23: 167-172. (Pubitemid 46497507)
11. Hamada Y, Urasopon N, et al. (2006). Body size and proportions and pelage color of free-ranging Ma-caca mulatta from a zone of hybridization in Northeastern Thailand. I nternational Journal of Primatology 27: 497-513. (Pubitemid 43886388)
12. Hernandez RD, Hubisz MJ, et al. (2007). Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques. Science 316: 240-243. (Pubitemid 46633094)
13. Hou J, Schindler U, et al. (1994). An interleukin-4-induced transcription factor: IL-4 Stat. Science 265: 1701-1706. (Pubitemid 24314900)
14. Kanthaswamy S, Smith DG (2004). Effects of geographic origin on captive Macaca mulatta mitochon-drial DNA variation. Comparative Medicine 54: 193-201. (Pubitemid 38590836)
15. Kanthaswamy S, Satkoski J, et al. (2008). Interspecies hybridization and the stratification of nuclear genetic variation of rhesus macaques (Macaca mulatta) and long-tailed macaques (Macaca fascu-cularis). International Journal of Primatology 29: 1295-1311.
16. Kanthaswamy S, Satkoski J, et al. (2010). Detecting signatures of inter-regional and inter-specific hybridization among the Chinese rhesus macaque specific pathogen-free (SPF) population using single nucleotide polymorphic (SNP) markers. Journal of Medical Primatology 39: 252-265.
17. Leek JP, Hamlin PJ, et al. (1997). Assignment of the Stat6 gene (Stat6) to human chromosome band 12q13 by in situ hybridization. Cytogenetics and Cell Genetics 79: 208-209. (Pubitemid 28211723)
18. Malaivijitnond S, Sae-Low W, et al. (2008). The human-ABO blood groups of free-ranging long-tailed macaques (Macaca fascicularis) and parapatric rhesus macaques (M. mulatta) in Thailand. Journal of Medical Primatology 37: 31-37.
19. Satkoski J, George D, et al. (2008). Genetic characterization of wild and captive rhesus macaques in China. Journal of Medical Primatology 37: 67-80. (Pubitemid 351386035)
20. Smith DG, McDonough J (2005). Mitochondrial DNA variation in Chinese and Indian rhesus macaques (Macaca mulatta). American Journal of Primatology 65: 1-25. (Pubitemid 40263501)
21. Smith DG, George D, et al. (2006). Identification of country of origin and admixture between Indian and Chinese rhesus macaques. International Journal of Primatology 27: 881-898. (Pubitemid 44213089)
22. Tosi AJ, Coke CS (2007). Comparative phylogenetics offer new insights into the biogeographic history of Macaca fascicularis and the origin of the Mauritian macaques. Molecular Phylogenetics and Evolution 42: 498-504. (Pubitemid 44751522)
23. Tosi AJ, Morales JC, et al. (2002). Y-chromosome and mitochondrial markers in Macaca fascicularis indicate introgression with Indochinese M. mulatta and a biogeographic barrier in the Isthmus of Kra. International Journal of Primatology 23: 161-178. (Pubitemid 34088651)
24. Wurster AL, Rodgers VL, et al. (2002). Interleukin-4-mediated protection of primary B cells from apop-tosis through Stat6-dependent up-regulation of Bcl-xL. Journal of Biological Chemistry 277: 27169-27175. (Pubitemid 34951732)