-
1
-
-
84889996510
-
Marked regulatory graphs: A formal framework to simulate biological regulatory networks with simple automata
-
San Diego
-
V. Bassano and G. Bernot. Marked regulatory graphs: A formal framework to simulate biological regulatory networks with simple automata. In 14'th International Workshop on Rapid System Prototyping, pages 93-99, San Diego, 2003.
-
(2003)
14'th International Workshop on Rapid System Prototyping
, pp. 93-99
-
-
Bassano, V.1
Bernot, G.2
-
2
-
-
26444460526
-
Semantics of biological regulatory networks
-
G. Bernot, F. Cassez, J.-P. Comet, F. Delaplace, C. Müller, O. Roux, and O.H. Roux. Semantics of biological regulatory networks. In Proceedings of the Workshop on Concurrent Models in Molecular Biology (BioConcur'2003), 2003.
-
(2003)
Proceedings of the Workshop on Concurrent Models in Molecular Biology (BioConcur'2003)
-
-
Bernot, G.1
Cassez, F.2
Comet, J.-P.3
Delaplace, F.4
Müller, C.5
Roux, O.6
Roux, O.H.7
-
3
-
-
3042693879
-
A fruitful application of formal methods to biological regulatory networks: Extending thomas' asynchronous logical approach with temporal logic
-
G. Bernot, J.-P. Comet, A. Richard, and J. Guespin. A fruitful application of formal methods to biological regulatory networks: Extending Thomas' asynchronous logical approach with temporal logic. J. Theor. Biol., 229(3):339-347, 2004.
-
(2004)
J. Theor. Biol.
, vol.229
, Issue.3
, pp. 339-347
-
-
Bernot, G.1
Comet, J.-P.2
Richard, A.3
Guespin, J.4
-
4
-
-
0004507892
-
Nusmv: A reimplementation of smv
-
BRICS Notes Series, NS-98-4
-
A. Cimatti, E. Clarke, F. Giunchiglia, and M. Roveri. NuSMV: A reimplementation of SMV. In Proceeding of the International Workshop on Software Tools for Technology Transfer (STTT-98), BRICS Notes Series, NS-98-4, pages 25-31, 1998.
-
(1998)
Proceeding of the International Workshop on Software Tools for Technology Transfer (STTT-98)
, pp. 25-31
-
-
Cimatti, A.1
Clarke, E.2
Giunchiglia, F.3
Roveri, M.4
-
5
-
-
0036306859
-
Positive and negative feedback: Striking a balance between necessary antagonists
-
O. Cinquin and J. Demongeot. Positive and negative feedback: Striking a balance between necessary antagonists. J. Theor. Biol., 216(2):229-241, 2002.
-
(2002)
J. Theor. Biol
, vol.216
, Issue.2
, pp. 229-241
-
-
Cinquin, O.1
Demongeot, J.2
-
6
-
-
0036864468
-
Roles of positive and negative feedback in biological systems
-
O. Cinquin and J. Demongeot. Roles of positive and negative feedback in biological systems. C.R.Biol., 325(11):1085-1095, 2002.
-
(2002)
C.R.Biol.
, vol.325
, Issue.11
, pp. 1085-1095
-
-
Cinquin, O.1
Demongeot, J.2
-
7
-
-
1242333310
-
Qualitative simulation of genetic regulatory networks using piecewise-linear models
-
H. de Jong, J.-L. Gouzé, C. Hernandez, M. Page, S. Tewfik, and J. Geiselmann. Qualitative simulation of genetic regulatory networks using piecewise-linear models. Bull. Math. Biol., 66(2):301-340, 2004.
-
(2004)
Bull. Math. Biol.
, vol.66
, Issue.2
, pp. 301-340
-
-
Jong, H.D.1
Gouzé, J.-L.2
Hernandez, C.3
Page, M.4
Tewfik, S.5
Geiselmann, J.6
-
8
-
-
0001449325
-
-
Volume B : formal models and semantics, chapter Temporal and modal logic, MIT Press
-
E.A. Emerson. Handbook of theoretical computer science, Volume B : formal models and semantics, chapter Temporal and modal logic, pages 995-1072. MIT Press, 1990.
-
(1990)
Handbook of Theoretical Computer Science
, pp. 995-1072
-
-
Emerson, E.A.1
-
10
-
-
0015609281
-
The logical analysis of continuous non linear biochemical control networks
-
L. Glass and S.A. Kauffman. The logical analysis of continuous non linear biochemical control networks. J. Theor. Biol., 39(1):103-129, 1973.
-
(1973)
J. Theor. Biol.
, vol.39
, Issue.1
, pp. 103-129
-
-
Glass, L.1
Kauffman, S.A.2
-
11
-
-
0036938728
-
A class of piecewise linear differential equations arising in biological models
-
J.-L. Gouzé and S. Tewfik. A class of piecewise linear differential equations arising in biological models. Dynamical Syst., 17:299-316, 2003.
-
(2003)
Dynamical Syst.
, vol.17
, pp. 299-316
-
-
Gouzé, J.-L.1
Tewfik, S.2
-
16
-
-
0032879544
-
Genetic control of flower morphogenesis in arabidopsis thaliana: A logical analysis
-
L. Mendoza, D. Thieffry, and E.R. Alvarez-Buylla. Genetic control of flower morphogenesis in arabidopsis thaliana: A logical analysis. Bioinformatics, 15(7-8):593-606, 1999.
-
(1999)
Bioinformatics
, vol.15
, Issue.7-8
, pp. 593-606
-
-
Mendoza, L.1
Thieffry, D.2
Alvarez-Buylla, E.R.3
-
17
-
-
84889976499
-
Contribution of computational tree logic to biological regulatory networks: Example from pseudomonas aeruginosa
-
S. Pérès and J.-P. Comet. Contribution of computational tree logic to biological regulatory networks: Example from pseudomonas aeruginosa. In International workshop on Computational Methods in Systems.
-
International Workshop on Computational Methods in Systems
-
-
Pérès, S.1
Comet, J.-P.2
-
18
-
-
0345136622
-
Feedback loops, stability and multistationarity in dynamical systems
-
E. Plathe, T. Mestl, and S.W. Omholt. Feedback loops, stability and multistationarity in dynamical systems. J. Biol. Syst., 3:569-577, 1995.
-
(1995)
J. Biol. Syst.
, vol.3
, pp. 569-577
-
-
Plathe, E.1
Mestl, T.2
Omholt, S.W.3
-
19
-
-
0035928464
-
A logical analysis of the drosophila gapgene system
-
L. Sánchez and D. Thieffry. A logical analysis of the drosophila gapgene system. J. Theor. Biol., 211(2):115-141, 2001.
-
(2001)
J. Theor. Biol.
, vol.211
, Issue.2
, pp. 115-141
-
-
Sánchez, L.1
Thieffry, D.2
-
20
-
-
0031583031
-
Establishment of the dorsoventral pattern during embryonic development of drosophila melanogaster: A logical analysis
-
L. Sánchez, J. van Helden, and D. Thieffry. Establishment of the dorsoventral pattern during embryonic development of drosophila melanogaster: A logical analysis. J. Theor. Biol., 189(4):377-389, 1997.
-
(1997)
J. Theor. Biol
, vol.189
, Issue.4
, pp. 377-389
-
-
Sánchez, L.1
Helden, J.V.2
Thieffry, D.3
-
21
-
-
0036578795
-
Network motifs in the transcriptional regulation network of escherichia coli
-
S.S. Shen-Orr, R. Milo, S. Mangan, and U. Alon. Network motifs in the transcriptional regulation network of Escherichia coli. Nat. Genet., 31(1):64-68, 2002.
-
(2002)
Nat. Genet.
, vol.31
, Issue.1
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
22
-
-
0024916497
-
Qualitative dynamics of a piecewise-linear differential equations : A discrete mapping approach
-
E.H. Snoussi. Qualitative dynamics of a piecewise-linear differential equations : A discrete mapping approach. Dynamics and stability of Systems, 4:189-207, 1989.
-
(1989)
Dynamics and Stability of Systems
, vol.4
, pp. 189-207
-
-
Snoussi, E.H.1
-
23
-
-
0001923376
-
Necessary conditions for multistationarity and stable periodicity
-
E.H. Snoussi. Necessary conditions for multistationarity and stable periodicity. J. Biol. Syst., 6:3-9, 1998.
-
(1998)
J. Biol. Syst.
, vol.6
, pp. 3-9
-
-
Snoussi, E.H.1
-
24
-
-
0001723411
-
Logical identification of all steady states : The concept of feedback loop characteristic states
-
E.H. Snoussi and R. Thomas. Logical identification of all steady states : The concept of feedback loop characteristic states. Bull. Math. Biol., 55(5):973-991, 1993.
-
(1993)
Bull. Math. Biol.
, vol.55
, Issue.5
, pp. 973-991
-
-
Snoussi, E.H.1
Thomas, R.2
-
25
-
-
7744230024
-
Graphical requirements for multistationarity
-
C. Soulé. Graphical requirements for multistationarity. ComPlexUs, 1:123-133, 2003.
-
(2003)
ComPlexUs
, vol.1
, pp. 123-133
-
-
Soulé, C.1
-
26
-
-
0029267492
-
Dynamical behaviour of biological regulatory networks II Immunity control in bacteriophage lambda
-
D. Thieffry and R. Thomas. Dynamical behaviour of biological regulatory networks - II. Immunity control in bacteriophage lambda. Bull. Math. Biol., 57(2):277-297, 1995.
-
(1995)
Bull. Math. Biol.
, vol.57
, Issue.2
, pp. 277-297
-
-
Thieffry, D.1
Thomas, R.2
-
27
-
-
0018080896
-
Logical analysis of systems comprising feedback loops
-
R. Thomas. Logical analysis of systems comprising feedback loops. J. Theor. Biol., 73(4):631-656, 1978.
-
(1978)
J. Theor. Biol
, vol.73
, Issue.4
, pp. 631-656
-
-
Thomas, R.1
-
30
-
-
0017053789
-
A complex control circuit. Regulation of immunity in temperate bacteriophages
-
R. Thomas, A.M. Gathoye, and L. Lambert. A complex control circuit. Regulation of immunity in temperate bacteriophages. Eur. J. Biochem., 71(1):211-227, 1976.
-
(1976)
Eur. J. Biochem
, vol.71
, Issue.1
, pp. 211-227
-
-
Thomas, R.1
Gathoye, A.M.2
Lambert, L.3
-
31
-
-
0035582202
-
Multistationarity, the basis of cell differentiation and memory II Logical analysis of regulatory networks in terms of feedback circuits
-
R. Thomas and M. Kaufman. Multistationarity, the basis of cell differentiation and memory. II. Logical analysis of regulatory networks in terms of feedback circuits. Chaos, 11:180-195, 2001.
-
(2001)
Chaos
, vol.11
, pp. 180-195
-
-
Thomas, R.1
Kaufman, M.2
-
32
-
-
0029267491
-
Dynamical behaviour of biological regulatory networks I Biological role of feedback loops an practical use of the concept of the loop-characteristic state
-
R. Thomas, D. Thieffry, and M. Kaufman. Dynamical behaviour of biological regulatory networks - I. Biological role of feedback loops an practical use of the concept of the loop-characteristic state. Bull. Math. Biol., 57(2):247-276, 1995.
-
(1995)
Bull. Math. Biol.
, vol.57
, Issue.2
, pp. 247-276
-
-
Thomas, R.1
Thieffry, D.2
Kaufman, M.3
|