-
1
-
-
52549130466
-
Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species
-
10.1038/hdy.2008.62, 18612321
-
Gissi C, Iannelli F, Pesole G. Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species. Heredity 2008, 101:301-320. 10.1038/hdy.2008.62, 18612321.
-
(2008)
Heredity
, vol.101
, pp. 301-320
-
-
Gissi, C.1
Iannelli, F.2
Pesole, G.3
-
2
-
-
37249058160
-
Angiosperm mitochondrial genomes and mutations
-
10.1016/j.mito.2007.10.006, 18065297
-
Kubo T, Newton KJ. Angiosperm mitochondrial genomes and mutations. Mitochondrion 2008, 8:5-14. 10.1016/j.mito.2007.10.006, 18065297.
-
(2008)
Mitochondrion
, vol.8
, pp. 5-14
-
-
Kubo, T.1
Newton, K.J.2
-
3
-
-
0031021278
-
The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides
-
Unseld M, Marienfeld JR, Brandt P, Brennicke A. The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat Genet 1997, 15:57-61.
-
(1997)
Nat Genet
, vol.15
, pp. 57-61
-
-
Unseld, M.1
Marienfeld, J.R.2
Brandt, P.3
Brennicke, A.4
-
4
-
-
0034235831
-
The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA)
-
10.1093/nar/28.13.2571, 102699, 10871408
-
Kubo T, Nishizawa S, Sugawara A, Itchoda N, Estiati A, Mikami T. The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA). Nucleic Acids Res 2000, 28:2571-2576. 10.1093/nar/28.13.2571, 102699, 10871408.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 2571-2576
-
-
Kubo, T.1
Nishizawa, S.2
Sugawara, A.3
Itchoda, N.4
Estiati, A.5
Mikami, T.6
-
5
-
-
8644286140
-
The cytoplasmic male-sterile type and normal type mitochondrial genomes of sugar beet share the same complement of genes of known function but differ in the content of expressed ORFs
-
10.1007/s00438-004-1058-9, 15340837
-
Satoh M, Kubo T, Nishizawa S, Estiati A, Itchoda N, Mikami T. The cytoplasmic male-sterile type and normal type mitochondrial genomes of sugar beet share the same complement of genes of known function but differ in the content of expressed ORFs. Mol Genet Genomics 2004, 272:247-256. 10.1007/s00438-004-1058-9, 15340837.
-
(2004)
Mol Genet Genomics
, vol.272
, pp. 247-256
-
-
Satoh, M.1
Kubo, T.2
Nishizawa, S.3
Estiati, A.4
Itchoda, N.5
Mikami, T.6
-
6
-
-
0344442430
-
The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana
-
10.1093/nar/gkg795, 219474, 14530439
-
Handa H. The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana. Nucleic Acids Res 2003, 31:5907-5916. 10.1093/nar/gkg795, 219474, 14530439.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 5907-5916
-
-
Handa, H.1
-
7
-
-
15044341867
-
The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants
-
10.1007/s00438-004-1075-8, 15583938
-
Sugiyama Y, Watase Y, Nagase M, Makita N, Yagura S, Hirai A, Sugiura M. The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants. Mol Genet Genomics 2005, 272:603-615. 10.1007/s00438-004-1075-8, 15583938.
-
(2005)
Mol Genet Genomics
, vol.272
, pp. 603-615
-
-
Sugiyama, Y.1
Watase, Y.2
Nagase, M.3
Makita, N.4
Yagura, S.5
Hirai, A.6
Sugiura, M.7
-
8
-
-
77951909120
-
Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes
-
10.1186/1471-2164-11-209, 2851602, 20346185
-
Fujii S, Kazama T, Yamada M, Toriyama K. Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes. BMC Genomics 2010, 11:209. 10.1186/1471-2164-11-209, 2851602, 20346185.
-
(2010)
BMC Genomics
, vol.11
, pp. 209
-
-
Fujii, S.1
Kazama, T.2
Yamada, M.3
Toriyama, K.4
-
9
-
-
0036456491
-
The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants
-
10.1007/s00438-002-0767-1, 12471441
-
Notsu Y, Masood S, Nishikawa T, Kubo N, Akiduki G, Nakazono M, Hirai A, Kadowaki K. The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol Genet Genomics 2002, 268:434-445. 10.1007/s00438-002-0767-1, 12471441.
-
(2002)
Mol Genet Genomics
, vol.268
, pp. 434-445
-
-
Notsu, Y.1
Masood, S.2
Nishikawa, T.3
Kubo, N.4
Akiduki, G.5
Nakazono, M.6
Hirai, A.7
Kadowaki, K.8
-
10
-
-
33646850768
-
The rice mitochondrial genomes and their variations
-
10.1104/pp.105.070060, 1361312, 16384910
-
Tian X, Zheng J, Hu S, Yu J. The rice mitochondrial genomes and their variations. Plant Physiol 2006, 140:401-410. 10.1104/pp.105.070060, 1361312, 16384910.
-
(2006)
Plant Physiol
, vol.140
, pp. 401-410
-
-
Tian, X.1
Zheng, J.2
Hu, S.3
Yu, J.4
-
11
-
-
35548984339
-
Comparisons among two fertile and three male-sterile mitochondrial genomes of maize
-
10.1534/genetics.107.073312, 2034622, 17660568
-
Allen JO, Fauron CM, Minx P, Roark L, Oddiraju S, Lin GN, Meyer L, Sun H, Kim K, Wang C, Du F, Xu D, Gibson M, Cifrese J, Clifton SW, Newton KJ. Comparisons among two fertile and three male-sterile mitochondrial genomes of maize. Genetics 2007, 177:1173-1192. 10.1534/genetics.107.073312, 2034622, 17660568.
-
(2007)
Genetics
, vol.177
, pp. 1173-1192
-
-
Allen, J.O.1
Fauron, C.M.2
Minx, P.3
Roark, L.4
Oddiraju, S.5
Lin, G.N.6
Meyer, L.7
Sun, H.8
Kim, K.9
Wang, C.10
Du, F.11
Xu, D.12
Gibson, M.13
Cifrese, J.14
Clifton, S.W.15
Newton, K.J.16
-
12
-
-
11144234440
-
Sequence and comparative analysis of the maize NB mitochondrial genome
-
10.1104/pp.104.044602, 527149, 15542500
-
Clifton SW, Minx P, Fauron CM, Gibson M, Allen JO, Sun H, Thompson M, Barbazuk WB, Kanuganti S, Tayloe C, Meyer L, Wilson RK, Newton KJ. Sequence and comparative analysis of the maize NB mitochondrial genome. Plant Physiol 2004, 136:3486-3503. 10.1104/pp.104.044602, 527149, 15542500.
-
(2004)
Plant Physiol
, vol.136
, pp. 3486-3503
-
-
Clifton, S.W.1
Minx, P.2
Fauron, C.M.3
Gibson, M.4
Allen, J.O.5
Sun, H.6
Thompson, M.7
Barbazuk, W.B.8
Kanuganti, S.9
Tayloe, C.10
Meyer, L.11
Wilson, R.K.12
Newton, K.J.13
-
13
-
-
28544439733
-
Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome
-
10.1093/nar/gki925, 1275586, 16260473
-
Ogihara Y, Yamazaki Y, Murai K, Kanno A, Terachi T, Shiina T, Miyashita N, Nasuda S, Nakamura C, Mori N, Takumi S, Murata M, Futo S, Tsunewaki K. Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome. Nucleic Acids Res 2005, 33:6235-6250. 10.1093/nar/gki925, 1275586, 16260473.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6235-6250
-
-
Ogihara, Y.1
Yamazaki, Y.2
Murai, K.3
Kanno, A.4
Terachi, T.5
Shiina, T.6
Miyashita, N.7
Nasuda, S.8
Nakamura, C.9
Mori, N.10
Takumi, S.11
Murata, M.12
Futo, S.13
Tsunewaki, K.14
-
14
-
-
0346752102
-
Correlations between gene expression and gene conservation in fission yeast
-
10.1101/gr.1420903, 403810, 14613978
-
Mata J, Bahler J. Correlations between gene expression and gene conservation in fission yeast. Genome Res 2003, 13:2686-2690. 10.1101/gr.1420903, 403810, 14613978.
-
(2003)
Genome Res
, vol.13
, pp. 2686-2690
-
-
Mata, J.1
Bahler, J.2
-
15
-
-
70349276670
-
Bursts of retrotransposition reproduced in Arabidopsis
-
10.1038/nature08351, 19734880
-
Tsukahara S, Kobayashi A, Kawabe A, Mathieu O, Miura A, Kakutani T. Bursts of retrotransposition reproduced in Arabidopsis. Nature 2009, 461:423-426. 10.1038/nature08351, 19734880.
-
(2009)
Nature
, vol.461
, pp. 423-426
-
-
Tsukahara, S.1
Kobayashi, A.2
Kawabe, A.3
Mathieu, O.4
Miura, A.5
Kakutani, T.6
-
16
-
-
33846101405
-
The TIGR Rice Genome Annotation Resource: improvements and new features
-
Database
-
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell C. The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res 2007, (35 Database):D883-887.
-
(2007)
Nucleic Acids Res
, Issue.35
-
-
Ouyang, S.1
Zhu, W.2
Hamilton, J.3
Lin, H.4
Campbell, M.5
Childs, K.6
Thibaud-Nissen, F.7
Malek, R.L.8
Lee, Y.9
Zheng, L.10
Orvis, J.11
Haas, B.12
Wortman, J.13
Buell, C.14
-
17
-
-
77956943288
-
Extensive loss of RNA editing sites in rapidly evolving silene mitochondrial genomes: selection vs. retroprocessing as the driving force
-
10.1534/genetics.110.118000, 20479143
-
Sloan DB, MacQueen AH, Alverson AJ, Palmer JD, Taylor DR. Extensive loss of RNA editing sites in rapidly evolving silene mitochondrial genomes: selection vs. retroprocessing as the driving force. Genetics 2010, 185:1369-1380. 10.1534/genetics.110.118000, 20479143.
-
(2010)
Genetics
, vol.185
, pp. 1369-1380
-
-
Sloan, D.B.1
MacQueen, A.H.2
Alverson, A.J.3
Palmer, J.D.4
Taylor, D.R.5
-
18
-
-
2942696655
-
Interactions of mitochondrial and nuclear genes that affect male gametophyte development
-
10.1105/tpc.015966, 2643387, 15131248
-
Hanson MR, Bentolila S. Interactions of mitochondrial and nuclear genes that affect male gametophyte development. Plant Cell 2004, 16(Suppl):S154-169. 10.1105/tpc.015966, 2643387, 15131248.
-
(2004)
Plant Cell
, vol.16
, Issue.SUPPL.
-
-
Hanson, M.R.1
Bentolila, S.2
-
19
-
-
3142671423
-
Proteomics of the rice cell: systematic identification of the protein populations in subcellular compartments
-
10.1007/s00438-004-1002-z, 15069638
-
Tanaka N, Fujita M, Handa H, Murayama S, Uemura M, Kawamura Y, Mitsui T, Mikami S, Tozawa Y, Yoshinaga T, Komatsu S. Proteomics of the rice cell: systematic identification of the protein populations in subcellular compartments. Mol Genet Genomics 2004, 271:566-576. 10.1007/s00438-004-1002-z, 15069638.
-
(2004)
Mol Genet Genomics
, vol.271
, pp. 566-576
-
-
Tanaka, N.1
Fujita, M.2
Handa, H.3
Murayama, S.4
Uemura, M.5
Kawamura, Y.6
Mitsui, T.7
Mikami, S.8
Tozawa, Y.9
Yoshinaga, T.10
Komatsu, S.11
-
20
-
-
84907095419
-
R, A language and environment for statistical computing
-
Vienna, Austria, R Development Core Team
-
R Development Core Team R, A language and environment for statistical computing. R Foundation for Statistical Computing 2009, Vienna, Austria, R Development Core Team.
-
(2009)
R Foundation for Statistical Computing
-
-
-
21
-
-
18644378331
-
The generic genome browser: a building block for a model organism system database
-
10.1101/gr.403602, 187535, 12368253
-
Stein LD, Mungall C, Shu S, Caudy M, Mangone M, Day A, Nickerson E, Stajich JE, Harris TW, Arva A, Lewis S. The generic genome browser: a building block for a model organism system database. Genome Res 2002, 12:1599-1610. 10.1101/gr.403602, 187535, 12368253.
-
(2002)
Genome Res
, vol.12
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.3
Caudy, M.4
Mangone, M.5
Day, A.6
Nickerson, E.7
Stajich, J.E.8
Harris, T.W.9
Arva, A.10
Lewis, S.11
-
22
-
-
79959508631
-
EMBOSSv6.0.0
-
EMBOSSv6.0.0. , http://emboss.sourceforge.net/index.html
-
-
-
-
23
-
-
59449084083
-
Characterization of cytoplasmic male sterility of rice with Lead Rice cytoplasm in comparison with that with Chinsurah Boro II cytoplasm
-
10.1007/s00299-008-0625-7, 18956194
-
Itabashi E, Kazama T, Toriyama K. Characterization of cytoplasmic male sterility of rice with Lead Rice cytoplasm in comparison with that with Chinsurah Boro II cytoplasm. Plant Cell Rep 2009, 28:233-239. 10.1007/s00299-008-0625-7, 18956194.
-
(2009)
Plant Cell Rep
, vol.28
, pp. 233-239
-
-
Itabashi, E.1
Kazama, T.2
Toriyama, K.3
-
24
-
-
0030175004
-
A promiscuous chloroplast DNA fragment is transcribed in plant mitochondria but the encoded RNA is not edited
-
10.1007/BF00042236, 8790296
-
Zeltz P, Kadowaki K, Kubo N, Maier RM, Hirai A, Kossel H. A promiscuous chloroplast DNA fragment is transcribed in plant mitochondria but the encoded RNA is not edited. Plant Mol Biol 1996, 31:647-656. 10.1007/BF00042236, 8790296.
-
(1996)
Plant Mol Biol
, vol.31
, pp. 647-656
-
-
Zeltz, P.1
Kadowaki, K.2
Kubo, N.3
Maier, R.M.4
Hirai, A.5
Kossel, H.6
-
25
-
-
49249105375
-
Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice
-
10.1111/j.1365-313X.2008.03529.x, 18435825
-
Kazama T, Nakamura T, Watanabe M, Sugita M, Toriyama K. Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice. Plant J 2008, 55:619-628. 10.1111/j.1365-313X.2008.03529.x, 18435825.
-
(2008)
Plant J
, vol.55
, pp. 619-628
-
-
Kazama, T.1
Nakamura, T.2
Watanabe, M.3
Sugita, M.4
Toriyama, K.5
-
26
-
-
0038694953
-
A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice
-
10.1016/S0014-5793(03)00480-0, 12782297
-
Kazama T, Toriyama K. A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice. FEBS Lett 2003, 544:99-102. 10.1016/S0014-5793(03)00480-0, 12782297.
-
(2003)
FEBS Lett
, vol.544
, pp. 99-102
-
-
Kazama, T.1
Toriyama, K.2
|