Sex-Associated DNA markers from turbot

Marine Biology Research

Volumn 7, Issue 4, 2011, Pages 378-387

  Casas, Laura ^a,b   Sánchez, Laura ^b   Orbán, Lá Szló ^c  

^a UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^b TEMASEK LIFE SCIENCES LABORATORY   (Singapore)

^c NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

Fish sex; RAPD; SCAR; Sex bias; Sex chromosomes

Indexed keywords

BIOASSAY; CHROMOSOME; COMPARATIVE STUDY; FLATFISH; GENETIC ANALYSIS; GENETIC MARKER; GENOME; IDENTIFICATION METHOD; MOLECULAR ANALYSIS; PARENT-OFFSPRING INTERACTION; POLYMORPHISM; SEX ALLOCATION; WILD POPULATION;

SCOPHTHALMIDAE; SCOPHTHALMUS MAXIMUS;

EID: 79957627244     PISSN: 17451000     EISSN: 17451019     Source Type: Journal    
DOI: 10.1080/17451000.2010.515226     Document Type: Article

References (65)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. Journal of Molecular Biology 215:403-410.
2. Bardakci F. 2000. The use of random amplified polymorphic DNA (RAPD) markers in sex discrimination in Nile tilapia, Oreochromis niloticus (Pisces: Cichlidae). Turkish Journal of Biology 24:169-175.
3. Baynes SM, Verner-Jeffreys D, Howell BR. 2006. Research on finfish cultivation. Science Series Technical Report (CEFAS, Lowestoft, UK) 32:1-64.
4. Benter T, Papadopoulos S, Pape M, Manns M, Poliwoda H. 1995. Optimization and reproducibility of Random Amplified Polymorphic DNA in human. Analytical Biochemistry 230:92-100.
5. Bercsenyi M, Magyary I, Urbanyi B, Orban L, Horvath L. 1998. Hatching out goldfish from common carp eggs: Interspecific androgenesis between two cyprinid species. Genome 41:573-579.
6. Blanquer A. 1990. Phylogeographie intraspecifique d'un poisson marin, le flet Platichthys flesus L. (Heterosomata). Polymorphisme des marqueus nucleaires et mitochondriaux. PhD thesis (in French). University of Montpellier, France. 157 pages.
7. Blanquer A, Alayse JP, Berrada-Rkhami O, Berrebi S. 1992. Allozyme variation in turbot (Psetta maxima) and brill (Scophthalmus rhombus) (Osteichthyes, Pleuronectiformes, Scophthalmidae) throughout their range in Europe. Journal of Fish Biology 41:725-736.
8. Bogush ML, Velikodvorskaya TV, Lebedev YB, Nikolaev LG, Lukyanov SA, Fradkov AF, et al. 1999. Identification and localization of differences between Escherichia coli and Salmonella typhimurium genomes by suppressive subtractive hybridization. Molecular and General Genetics 262:721-729.
9. Bouza C, Sanchez L, Martinez P. 1994. Karyotypic characterization of turbot (Scophthalmus maximus) with conventional, fluorochrome and restriction endonuclease-banding techniques. Marine Biology 120:609-613.
10. Bouza C, Sanchez L, Martinez P. 1997. Gene diversity analysis in natural populations and cultured stocks of turbot (Scophthalmus maximus L). Animal Genetics 28:28-36.
11. Bouza C, Presa P, Castro J, Sanchez L, Martinez P. 2002. Allozyme and microsatellite diversity in natural and domestic populations of turbot (Scophthalmus maximus) in comparison with other Pleuronectiformes. Canadian Journal of Fisheries and Aquatic Sciences 59:1460-1473.
12. Bouza C, Hermida M, Pardo BG, Fernandez C, Fortes GG, Castro J, et al. 2007. A microsatellite map of the turbot (Scophthalmus maximus). Genetics 177:2457-2467.
13. Cal RM, Vidal S, Gomez C, Alvarez-Blazquez B, Martinez P, Piferrer F. 2006a. Growth and gonadal development in diploid and triploid turbot (Scophthalmus maximus). Aquaculture 251:99-108.
14. Cal RM, Vidal S, Martinez P, Alvarez-Blazquez B, Gomez C, Piferrer F. 2006b. Growth and gonadal development of gynogenetic diploid Scophthalmus maximus. Journal of Fish Biology 68:401-413.
15. Chang A, Liew WC, Chuah A, Lim Z, Lin Q, Orban L. 2007. Fluo MEP: A new genotyping method combining the advantages of randomly amplified polymorphic DNA and amplified fragment length polymorphism. Electrophoresis 28:525-534.
16. Chen J, Wang Y, Yue Y, Xia X, Du Q, Chang Z. 2009. A novel male-specific DNA sequence in the common carp, Cyprinus carpio. Molecular and Cellular Probes 23:235-239.
17. Cuñado N, Terrones J, Sanchez L, Martinez P, Santos JL. 2002. Synaptonemal complex analysis in spermatocytes and oocytes of turbot, Scophthalmus maximus (Pisces, Scophthalmidae). Genome 44:1143-1147.
18. Davis GP, Hetzel DJS. 2000. Integrating molecular genetic technology with traditional approaches for genetic improvement in aquaculture species. Aquaculture Research 31:3-10.
19. Deng Z, Huang S, Xiao S, Gmitter FG. 1997. Development and characterization of SCAR markers linked to the citrus tristeza virus resistance gene from Poncirus trifoliata. Genome 40:697-704.
20. Dunham RA. 2004. Aquaculture and Fisheries Biotechnology: Genetic Approaches. Cambridge: BI Publishing. 372 pages.
21. Felip A, Zanuy S, Carrillo M, Piferrer F. 2001. Induction of triploidy and gynogenesis in teleost fish with emphasis on marine species. Genetica 111:175-195.
22. Garcia DK, Dhar AK, Alcivar-Warren A. 1996. Molecular analysis of a RAPD marker (B20) reveals two microsatellites and differential mRNA expression in Penaeus vannamei. Molecular Marine Biology and Biotechnology 5:71-83.
23. Haffray P, Lebègue E, Jeu S, Guennoc M, Guiguen Y, Baroiller JF, Fostier A. 2009. Genetic determination and temperature effects on turbot Scophthalmus maximus sex differentiation: An investigation using steroid sex-inverted males and females. Aquaculture 294:30-36.
24. Hardie DC, Hebert PDN. 2003. The nucleotypic effects of cellular DNA content in cartilaginous and ray-finned fishes. Genome 46:683-706.
25. Hardie DC, Hebert PDN. 2004. Genome-size evolution in fishes. Canadian Journal of Fisheries and Aquatic Sciences 61:1636-1646.
26. Henegariu O, Heerema NA, Dlouhy SR, Vance GH, Vogt PH. 1997. Multiplex PCR: Critical parameters and step-by-step protocol. Biotechniques 23:504-511.
27. Husebye H, Lund S, Moller M, Sunde A, Krokan HE. 1994. A Bkm-related DNA sequence gives individual DNA fingerprints in turbot (Scophthalmus maximus), but neither Bkmrelated, human SRYor human ZFY probes detect genetic sexdifferences. Comparative Biochemistry and Physiology Part B Biochemistry and Molecular Biology 107:69-73.
28. Imsland AK, Folkvord A, Grung GL, Stefansson SO, Taranger GL. 1997. Sexual dimorphism in growth and maturation of turbot, Scophthalmus maximus (Rafinesque, 1810). Aquaculture Research 28:101-114.
29. Itoh MB, Ishizuka B. 2005. Alpha1-adrenergic receptor in rat ovary: Presence and localization. Molecular and Cellular Endocrinology 240:58-63.
30. Iturra P, Medrano JF, Bagley M, Lam N, Vergara N, Marin JC. 1998. Identification of sex chromosome molecular markers using RAPDs and fluorescent in situ hybridization in rainbow trout. Genetica 101:209-213.
31. Jilin L. 2003. The development direction of turbot farming industry in China (in Chinese). Scientific Fish Farming 7:26-28.
32. Jones CJ, Edwards KJ, Castaglione S, Winfield MO, Sala F, vandeWiel C, et al. 1997. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Molecular Breeding 3:381-390.
33. Keyvanshokooh S, Pourkazemi M, Kalbassi MR. 2007. The RAPD technique failed to identify sex-specific sequences in beluga (Huso huso). Journal of Applied Ichthyology 23:1-2.
34. Komen H, Thorgaard GH. 2007. Androgenesis, gynogenesis and the production of clones in fish: A review. Aquaculture 269:150-173.
35. Kovacs B, Egedi S, Bartfai R, Orban L. 2001. Male-specific DNA markers from African catfish (Clarias gariepinus). Genetica 110:267-276.
36. Li Y, Hill JA, Yue GH, Chen F, Orban L. 2002. Extensive search does not identify genomic sex markers in Tetraodon nigroviridis. Journal of Fish Biology 61:1314-1317.
37. Lisitsyn N, Lisitsyn N, Wigler M. 1993. Cloning the differences between two complex genomes. Science 259:946-951.
38. Lisitsyn NA. 1995. Representational Difference Analysis - Finding the differences between genomes. Trends in Genetics 11:303-307.
39. Liu ZJ, Cordes JF. 2004. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238:1-37.
40. MacPherson JM, Eckstein PE, Scoles GJ, Gajadhar AA. 1993. Variability of the random amplified polymorphic DNA assay among thermal cyclers, and effects of primer and DNA concentration. Molecular and Cellular Probes 7:293-299.
41. Martínez P, Bouza C, Hermida M, Fernández J, et al. 2009. Identification of the major sex-determining region of turbot (Scophthalmus maximus). Genetics 183:1443-1452.
42. McGowan C, Davidson WS. 1998. The RAPD technique fails to detect a male-specific genetic marker in Atlantic salmon. Journal of Fish Biology 53:1134-1136.
43. Meunier JR, Grimont PAD. 1993. Factors affecting reproducibility of Random Amplified Polymorphic DNA fingerprinting. Research in Microbiology 144:373-379.
44. Mhaouty-Kodja S, Lozach A, Habert R, Tanneux M, Guigon C, Brailly-Tabard S, et al. 2007. Fertility and spermatogenesis are altered in (1b-adrenergic receptor knockout male mice. Journal of Endocrinology 195:281-292.
45. Michelmore RW, Paran I, Kesseli RV. 1991. Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations. Proceedings of the National Academy of Sciences 88:9828-9832.
46. Nakao S, Matsunaga S, Sakai A, Kuroiwa T, Kawano S. 2002. RAPD isolation of a Y chromosome specific ORF in a dioecious plant, Silene latifolia. Genome 45:413-420.
47. Nesbo CL, Nelson KE, Doolittle WF. 2002. Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima. Journal of Bacteriology 184:4475-4488.
48. Pandian TJ, Kirankumar S. 2003. Recent advances in hormonal induction of sex reversal in fish. Journal of Applied Aquaculture 13:205-230.
49. Paran I, Michelmore RW. 1993. Development of reliable PCRbased markers linked to downy mildew resistance genes in lettuce. Theoretical and Applied Genetics 85:985-993.
50. Piferrer F, Blazquez M, Felip A, Ramos J, Carrillo M, Zanuy S. 1995. Manipulación de la proporción de sexos en teleó steos y su aplicación en acuicultura. In: Castelló, F, Calderer A, editors. Actas del Va Congreso Nacional de Acuicultura. Barcelona: Publ. Univ. Barcelona, pp. 18-23.
51. Piferrer F, Cal RM, Alvarez-Blazquez B, Sanchez L, Martinez P. 2000. Induction of triploidy in the turbot (Scophthalmus maximus) - I. Ploidy determination and the effects of cold shocks. Aquaculture 188:79-90.
52. Piferrer F, Cal RM, Gomez C, Bouza C, Martinez P. 2003. Induction of triploidy in the turbot (Scophthalmus maximus) -II. Effects of cold shock timing and induction of triploidy in a large volume of eggs. Aquaculture 220:821-831.
53. Piferrer F, Cal RM, Gomez C, Alvarez-Blazquez B, Castro J, Martinez P. 2004. Induction of gynogenesis in the turbot (Scophthalmus maximus): Effects of UV irradiation on sperm motility, the Hertwig effect and viability during the first 6 months of age. Aquaculture 238:403-419.
54. Rothschild MF and Ruvinsky A. 2007. Marker-assisted selection for aquatic species. Chapter 12 in: Z. Liu, editor. Aquaculture Genome Technologies. Oxford: Blackwell Publishing, pp. 199-213.
55. Rozen S, Skaletsky HJ. 2000. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S, editors. Bioinformatics Methods and Protocols: Methods in Molecular Biology. Totowa, NJ: Humana Press, pp. 365-386.
56. Sambrook J, Russell D. 2001. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, pp. 1-2344.
57. Singh L, Panicker SG, Nagaraj R, Majumdar KC. 1994. Banded krait minor-satellite (Bkm)-associated Y chromosome-specific repetitive DNA in mouse. Nucleic Acids Research 22:2289-2295.
58. Stankus S. 2003. The peculiarities of turbot (Psetta maxima L.) biology and their role in the ecosystem of the Baltic Sea coastal zone of Lithuania. Acta Zoologica Lituanica 13:217-238.
59. Villanueva RJL, Souto FB. 2000 (updated in 2006). Cultured Aquatic Species Information Programme - Psetta maxima. Rome, available via FIGIS from http://www.fao.org/figis/servlet/static?dom-culturespecies&xml-Psetta-maxima.xml, FAO Inland Water Resources and Aquaculture Service (FIRI).
60. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, et al. 1995. AFLP: A new technique for DNA fingerprinting. Nucleic Acids Research 23:4407-4414.
61. Welsh J, McClelland M. 1990. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Research 18:7213-7218.
62. Williams JG, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18:6531-6535.
63. Wuertz S, Gaillard S, Barbisan F, Carle S, Congiu L, Forlani A, et al. 2006. Extensive screening of sturgeon genomes by random screening techniques revealed no sex-specific marker. Aquaculture 258:685-688.
64. Yue GH, Ong D, Wong CC, Lim LC, Orban L. 2003. A strainspecific and a sex-associated STS marker for Asian arowana (Scleropages formosus, Osteoglossidae). Aquaculture Research 34:951-957.
65. Zhang Y, Stommel JR. 2001. Development of SCAR and CAPS markers linked to the beta gene in tomato. Crop Science 41:1602-1608.