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Volumn 6, Issue 5, 2011, Pages

Promoter methylation in head and neck squamous cell carcinoma cell lines is significantly different than methylation in primary tumors and xenografts

Author keywords

[No Author keywords available]

Indexed keywords

DNA; HYDROGEN SULFITE; SULFITE;

EID: 79957568722     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0020584     Document Type: Article
Times cited : (53)

References (32)
  • 1
    • 0036274359 scopus 로고    scopus 로고
    • The fundamental role of epigenetic events in cancer
    • Jones PA, Baylin SB, (2002) The fundamental role of epigenetic events in cancer. Nat Rev Genet 3: 415-428.
    • (2002) Nat Rev Genet , vol.3 , pp. 415-428
    • Jones, P.A.1    Baylin, S.B.2
  • 2
    • 0032960181 scopus 로고    scopus 로고
    • Cancer epigenetics comes of age
    • Jones PA, Laird PW, (1999) Cancer epigenetics comes of age. Nat Genet 21: 163-167.
    • (1999) Nat Genet , vol.21 , pp. 163-167
    • Jones, P.A.1    Laird, P.W.2
  • 3
    • 33847065486 scopus 로고    scopus 로고
    • The epigenomics of cancer
    • Jones PA, Baylin SB, (2007) The epigenomics of cancer. Cell 128: 683-692.
    • (2007) Cell , vol.128 , pp. 683-692
    • Jones, P.A.1    Baylin, S.B.2
  • 4
    • 0012508834 scopus 로고    scopus 로고
    • Pharmacologic unmasking of epigenetically silenced tumor suppressor genes in esophageal squamous cell carcinoma
    • Yamashita K, Upadhyay S, Osada M, Hoque MO, Xiao Y, et al. (2002) Pharmacologic unmasking of epigenetically silenced tumor suppressor genes in esophageal squamous cell carcinoma. Cancer Cell 2: 485-495.
    • (2002) Cancer Cell , vol.2 , pp. 485-495
    • Yamashita, K.1    Upadhyay, S.2    Osada, M.3    Hoque, M.O.4    Xiao, Y.5
  • 5
    • 33645734603 scopus 로고    scopus 로고
    • N-methyl-D-aspartate receptor type 2B is epigenetically inactivated and exhibits tumor-suppressive activity in human esophageal cancer
    • Kim MS, Yamashita K, Baek JH, Park HL, Carvalho AL, et al. (2006) N-methyl-D-aspartate receptor type 2B is epigenetically inactivated and exhibits tumor-suppressive activity in human esophageal cancer. Cancer Res 66: 3409-3418.
    • (2006) Cancer Res , vol.66 , pp. 3409-3418
    • Kim, M.S.1    Yamashita, K.2    Baek, J.H.3    Park, H.L.4    Carvalho, A.L.5
  • 6
    • 4344628907 scopus 로고    scopus 로고
    • Inverse correlation between cyclin A1 hypermethylation and p53 mutation in head and neck cancer identified by reversal of epigenetic silencing
    • Tokumaru Y, Yamashita K, Osada M, Nomoto S, Sun DI, et al. (2004) Inverse correlation between cyclin A1 hypermethylation and p53 mutation in head and neck cancer identified by reversal of epigenetic silencing. Cancer Res 64: 5982-5987.
    • (2004) Cancer Res , vol.64 , pp. 5982-5987
    • Tokumaru, Y.1    Yamashita, K.2    Osada, M.3    Nomoto, S.4    Sun, D.I.5
  • 7
    • 0035875049 scopus 로고    scopus 로고
    • Excessive CpG island hypermethylation in cancer cell lines versus primary human malignancies
    • Smiraglia DJ, Rush LJ, Fruhwald MC, Dai Z, Held WA, et al. (2001) Excessive CpG island hypermethylation in cancer cell lines versus primary human malignancies. Hum Mol Genet 10: 1413-1419.
    • (2001) Hum Mol Genet , vol.10 , pp. 1413-1419
    • Smiraglia, D.J.1    Rush, L.J.2    Fruhwald, M.C.3    Dai, Z.4    Held, W.A.5
  • 8
    • 0027945051 scopus 로고
    • Comparison of DNA Methylation Patterns among Mouse-Cell Lines by Restriction Landmark Genomic Scanning
    • Kawai J, Hirose K, Fushiki S, Hirotsune S, Ozawa N, et al. (1994) Comparison of DNA Methylation Patterns among Mouse-Cell Lines by Restriction Landmark Genomic Scanning. Molecular and Cellular Biology 14: 7421-7427.
    • (1994) Molecular and Cellular Biology , vol.14 , pp. 7421-7427
    • Kawai, J.1    Hirose, K.2    Fushiki, S.3    Hirotsune, S.4    Ozawa, N.5
  • 9
    • 75449099720 scopus 로고    scopus 로고
    • EBV transformation and cell culturing destabilizes DNA methylation in human lymphoblastoid cell lines
    • Grafodatskaya D, Choufani S, Ferreira JC, Butcher DT, Lou Y, et al. (2010) EBV transformation and cell culturing destabilizes DNA methylation in human lymphoblastoid cell lines. Genomics 95: 73-83.
    • (2010) Genomics , vol.95 , pp. 73-83
    • Grafodatskaya, D.1    Choufani, S.2    Ferreira, J.C.3    Butcher, D.T.4    Lou, Y.5
  • 10
    • 0025006860 scopus 로고
    • High levels of de novo methylation and altered chromatin structure at CpG islands in cell lines
    • Antequera F, Boyes J, Bird A, (1990) High levels of de novo methylation and altered chromatin structure at CpG islands in cell lines. Cell 62: 503-514.
    • (1990) Cell , vol.62 , pp. 503-514
    • Antequera, F.1    Boyes, J.2    Bird, A.3
  • 12
    • 77449100153 scopus 로고    scopus 로고
    • Cell culture-induced aberrant methylation of the imprinted IG DMR in human lymphoblastoid cell lines
    • Saferali A, Grundberg E, Berlivet S, Beauchemin H, Morcos L, et al. (2010) Cell culture-induced aberrant methylation of the imprinted IG DMR in human lymphoblastoid cell lines. Epigenetics 5: 50-60.
    • (2010) Epigenetics , vol.5 , pp. 50-60
    • Saferali, A.1    Grundberg, E.2    Berlivet, S.3    Beauchemin, H.4    Morcos, L.5
  • 13
    • 30844436610 scopus 로고    scopus 로고
    • Head and neck cancer cell lines exhibit differential mitochondrial repair deficiency in response to 4NQO
    • Kim MM, Glazer CA, Mambo E, Chatterjee A, Zhao M, et al. (2006) Head and neck cancer cell lines exhibit differential mitochondrial repair deficiency in response to 4NQO. Oral Oncol 42: 201-207.
    • (2006) Oral Oncol , vol.42 , pp. 201-207
    • Kim, M.M.1    Glazer, C.A.2    Mambo, E.3    Chatterjee, A.4    Zhao, M.5
  • 14
    • 18744369640 scopus 로고    scopus 로고
    • Use of within-array replicate spots for assessing differential expression in microarray experiments
    • Smyth GK, Michaud J, Scott HS, (2005) Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics 21: 2067-2075.
    • (2005) Bioinformatics , vol.21 , pp. 2067-2075
    • Smyth, G.K.1    Michaud, J.2    Scott, H.S.3
  • 15
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
    • (2004) Genome Biol , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3    Bolstad, B.4    Dettling, M.5
  • 16
    • 0037311919 scopus 로고    scopus 로고
    • TM4: a free, open-source system for microarray data management and analysis
    • Saeed AI, Sharov V, White J, Li J, Liang W, et al. (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34: 374-378.
    • (2003) Biotechniques , vol.34 , pp. 374-378
    • Saeed, A.I.1    Sharov, V.2    White, J.3    Li, J.4    Liang, W.5
  • 17
    • 0036856355 scopus 로고    scopus 로고
    • MethPrimer: designing primers for methylation PCRs
    • Li LC, Dahiya R, (2002) MethPrimer: designing primers for methylation PCRs. Bioinformatics 18: 1427-1431.
    • (2002) Bioinformatics , vol.18 , pp. 1427-1431
    • Li, L.C.1    Dahiya, R.2
  • 18
    • 0036848385 scopus 로고    scopus 로고
    • Heterogeneity in the modification and involvement of chromatin components of the CpG island of the silenced human CDH1 gene in cancer cells
    • Koizume S, Tachibana K, Sekiya T, Hirohashi S, Shiraishi M, (2002) Heterogeneity in the modification and involvement of chromatin components of the CpG island of the silenced human CDH1 gene in cancer cells. Nucleic Acids Res 30: 4770-4780.
    • (2002) Nucleic Acids Res , vol.30 , pp. 4770-4780
    • Koizume, S.1    Tachibana, K.2    Sekiya, T.3    Hirohashi, S.4    Shiraishi, M.5
  • 19
    • 0037373891 scopus 로고    scopus 로고
    • A systematic profile of DNA methylation in human cancer cell lines
    • Paz MF, Fraga MF, Avila S, Guo M, Pollan M, et al. (2003) A systematic profile of DNA methylation in human cancer cell lines. Cancer Res 63: 1114-1121.
    • (2003) Cancer Res , vol.63 , pp. 1114-1121
    • Paz, M.F.1    Fraga, M.F.2    Avila, S.3    Guo, M.4    Pollan, M.5
  • 20
    • 70350574158 scopus 로고    scopus 로고
    • Characterizing DNA methylation patterns in pancreatic cancer genome
    • Tan AC, Jimeno A, Lin SH, Wheelhouse J, Chan F, et al. (2009) Characterizing DNA methylation patterns in pancreatic cancer genome. Mol Oncol 3: 425-438.
    • (2009) Mol Oncol , vol.3 , pp. 425-438
    • Tan, A.C.1    Jimeno, A.2    Lin, S.H.3    Wheelhouse, J.4    Chan, F.5
  • 21
    • 77949574043 scopus 로고    scopus 로고
    • DNA methylation profiles of ovarian epithelial carcinoma tumors and cell lines
    • Houshdaran S, Hawley S, Palmer C, Campan M, Olsen MN, et al. (2010) DNA methylation profiles of ovarian epithelial carcinoma tumors and cell lines. PLoS One 5: e9359.
    • (2010) PLoS One , vol.5
    • Houshdaran, S.1    Hawley, S.2    Palmer, C.3    Campan, M.4    Olsen, M.N.5
  • 22
    • 34248138871 scopus 로고    scopus 로고
    • Molecular analysis of primary gastric cancer, corresponding xenografts, and 2 novel gastric carcinoma cell lines reveals novel alterations in gastric carcinogenesis
    • Milne AN, Sitarz R, Carvalho R, Polak MM, Ligtenberg M, et al. (2007) Molecular analysis of primary gastric cancer, corresponding xenografts, and 2 novel gastric carcinoma cell lines reveals novel alterations in gastric carcinogenesis. Hum Pathol 38: 903-913.
    • (2007) Hum Pathol , vol.38 , pp. 903-913
    • Milne, A.N.1    Sitarz, R.2    Carvalho, R.3    Polak, M.M.4    Ligtenberg, M.5
  • 23
    • 77952203695 scopus 로고    scopus 로고
    • S110, a 5-Aza-2′-deoxycytidine-containing dinucleotide, is an effective DNA methylation inhibitor in vivo and can reduce tumor growth
    • Chuang JC, Warner SL, Vollmer D, Vankayalapati H, Redkar S, et al. (2010) S110, a 5-Aza-2′-deoxycytidine-containing dinucleotide, is an effective DNA methylation inhibitor in vivo and can reduce tumor growth. Mol Cancer Ther 9: 1443-1450.
    • (2010) Mol Cancer Ther , vol.9 , pp. 1443-1450
    • Chuang, J.C.1    Warner, S.L.2    Vollmer, D.3    Vankayalapati, H.4    Redkar, S.5
  • 24
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • TCGA
    • TCGA (2008) Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 455: 1061-1068.
    • (2008) Nature , vol.455 , pp. 1061-1068
  • 25
    • 1942518912 scopus 로고    scopus 로고
    • Clonogenic assay with established human tumour xenografts: correlation of in vitro to in vivo activity as a basis for anticancer drug discovery
    • Fiebig HH, Maier A, Burger AM, (2004) Clonogenic assay with established human tumour xenografts: correlation of in vitro to in vivo activity as a basis for anticancer drug discovery. Eur J Cancer 40: 802-820.
    • (2004) Eur J Cancer , vol.40 , pp. 802-820
    • Fiebig, H.H.1    Maier, A.2    Burger, A.M.3
  • 27
    • 0036624736 scopus 로고    scopus 로고
    • The nonobese diabetic/severe combined immunodeficient (NOD/SCID) mouse model of childhood acute lymphoblastic leukemia reveals intrinsic differences in biologic characteristics at diagnosis and relapse
    • Lock RB, Liem N, Farnsworth ML, Milross CG, Xue C, et al. (2002) The nonobese diabetic/severe combined immunodeficient (NOD/SCID) mouse model of childhood acute lymphoblastic leukemia reveals intrinsic differences in biologic characteristics at diagnosis and relapse. Blood 99: 4100-4108.
    • (2002) Blood , vol.99 , pp. 4100-4108
    • Lock, R.B.1    Liem, N.2    Farnsworth, M.L.3    Milross, C.G.4    Xue, C.5
  • 28
    • 0023010585 scopus 로고
    • Accurate laboratory predictions of the clinical response of patients with advanced ovarian cancer to treatment with cyclophosphamide, doxorubicin, and cisplatin
    • Stratton JA, Kucera PR, Rettenmaier MA, Dobashi K, Micha JP, et al. (1986) Accurate laboratory predictions of the clinical response of patients with advanced ovarian cancer to treatment with cyclophosphamide, doxorubicin, and cisplatin. Gynecol Oncol 25: 302-310.
    • (1986) Gynecol Oncol , vol.25 , pp. 302-310
    • Stratton, J.A.1    Kucera, P.R.2    Rettenmaier, M.A.3    Dobashi, K.4    Micha, J.P.5
  • 29
    • 77649178137 scopus 로고    scopus 로고
    • Patient-derived first generation xenografts of non-small cell lung cancers: promising tools for predicting drug responses for personalized chemotherapy
    • Dong X, Guan J, English JC, Flint J, Yee J, et al. (2010) Patient-derived first generation xenografts of non-small cell lung cancers: promising tools for predicting drug responses for personalized chemotherapy. Clin Cancer Res 16: 1442-1451.
    • (2010) Clin Cancer Res , vol.16 , pp. 1442-1451
    • Dong, X.1    Guan, J.2    English, J.C.3    Flint, J.4    Yee, J.5
  • 30
    • 68749085806 scopus 로고    scopus 로고
    • Patient-derived xenografts of non-small-cell lung cancer: a pre-clinical model to evaluate adjuvant chemotherapy?
    • Merk J, Rolff J, Becker M, Leschber G, Fichtner I, (2009) Patient-derived xenografts of non-small-cell lung cancer: a pre-clinical model to evaluate adjuvant chemotherapy? Eur J Cardiothorac Surg 36: 454-459.
    • (2009) Eur J Cardiothorac Surg , vol.36 , pp. 454-459
    • Merk, J.1    Rolff, J.2    Becker, M.3    Leschber, G.4    Fichtner, I.5
  • 31
    • 77649178137 scopus 로고    scopus 로고
    • Patient-derived first generation xenografts of non-small cell lung cancers: promising tools for predicting drug responses for personalized chemotherapy
    • Dong X, Guan J, English JC, Flint J, Yee J, et al. Patient-derived first generation xenografts of non-small cell lung cancers: promising tools for predicting drug responses for personalized chemotherapy. Clin Cancer Res 16: 1442-1451.
    • Clin Cancer Res , vol.16 , pp. 1442-1451
    • Dong, X.1    Guan, J.2    English, J.C.3    Flint, J.4    Yee, J.5
  • 32
    • 58149186087 scopus 로고    scopus 로고
    • Establishment of patient-derived non-small cell lung cancer xenografts as models for the identification of predictive biomarkers
    • Fichtner I, Rolff J, Soong R, Hoffmann J, Hammer S, et al. (2008) Establishment of patient-derived non-small cell lung cancer xenografts as models for the identification of predictive biomarkers. Clin Cancer Res 14: 6456-6468.
    • (2008) Clin Cancer Res , vol.14 , pp. 6456-6468
    • Fichtner, I.1    Rolff, J.2    Soong, R.3    Hoffmann, J.4    Hammer, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.