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Volumn 108, Issue 19, 2011, Pages 7799-7803

Nucleosome positioning in a model of active chromatin remodeling enzymes

Author keywords

ATP dependent nucleosome removal; ATP dependent nucleosome sliding; Chromatin dynamics; Protein DNA interactions

Indexed keywords

ADENOSINE TRIPHOSPHATE;

EID: 79956351217     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1015206108     Document Type: Article
Times cited : (37)

References (26)
  • 1
    • 0037992395 scopus 로고    scopus 로고
    • The structure of DNA in the nucleosome core
    • DOI 10.1038/nature01595
    • Richmond TJ, Davey CA (2003) The structure of DNA in the nucleosome core. Nature 423:145-150. (Pubitemid 36569532)
    • (2003) Nature , vol.423 , Issue.6936 , pp. 145-150
    • Richmond, T.J.1    Davey, C.A.2
  • 2
    • 62649085538 scopus 로고    scopus 로고
    • The DNA-encoded nucleosome organization of a eukaryotic genome
    • Kaplan N, et al. (2009) The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 458:362-366.
    • (2009) Nature , vol.458 , pp. 362-366
    • Kaplan, N.1
  • 3
    • 77950361329 scopus 로고    scopus 로고
    • Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences?
    • Stein A, Takasuka TE, Collings CK (2010) Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences? Nucleic Acids Res 38:709-719.
    • (2010) Nucleic Acids Res , vol.38 , pp. 709-719
    • Stein, A.1    Takasuka, T.E.2    Collings, C.K.3
  • 4
    • 77349100416 scopus 로고    scopus 로고
    • New insights into two distinct nucleosome distributions: Comparison of cross-platform positioning datasets in the yeast genome
    • Feng J, et al. (2010) New insights into two distinct nucleosome distributions: Comparison of cross-platform positioning datasets in the yeast genome. BMC Genomics 11:33.
    • (2010) BMC Genomics , vol.11 , pp. 33
    • Feng, J.1
  • 5
    • 78149343915 scopus 로고    scopus 로고
    • Structural constraints revealed in consistent nucleosome positions in the genome of S. cerevisiae
    • Nikolaou C, Althammer S, Beato M, Guig R (2010) Structural constraints revealed in consistent nucleosome positions in the genome of S. cerevisiae. Epigenetics & Chromatin 3:20.
    • (2010) Epigenetics & Chromatin , vol.3 , pp. 20
    • Nikolaou, C.1    Althammer, S.2    Beato, M.3    Guig, R.4
  • 10
    • 0344198456 scopus 로고    scopus 로고
    • Chromatin remodeling by ATP-dependent molecular machines
    • DOI 10.1002/bies.10359
    • Lusser A, Kadonaga JT (2003) Chromatin remodeling by ATP-dependent molecular machines. BioEssays 25:1192-1200. (Pubitemid 37499319)
    • (2003) BioEssays , vol.25 , Issue.12 , pp. 1192-1200
    • Lusser, A.1    Kadonaga, J.T.2
  • 13
    • 33845356072 scopus 로고    scopus 로고
    • The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing
    • DOI 10.1038/nsmb1170, PII NSMB1170
    • Yang JG, Madrid TS, Sevastopoulos E, Narlikar GJ (2006) The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing. Nat Struct Mol Biol 13:1078-1083. (Pubitemid 44885917)
    • (2006) Nature Structural and Molecular Biology , vol.13 , Issue.12 , pp. 1078-1083
    • Yang, J.G.1    Madrid, T.S.2    Sevastopoulos, E.3    Narlikar, G.J.4
  • 14
    • 33745221438 scopus 로고    scopus 로고
    • Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes
    • Stockdale C, Flaus A, Ferreira H, Owen-Hughes T (2006) Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes. J Biol Chem 281:16279-16288.
    • (2006) J Biol Chem , vol.281 , pp. 16279-16288
    • Stockdale, C.1    Flaus, A.2    Ferreira, H.3    Owen-Hughes, T.4
  • 15
    • 33744916194 scopus 로고    scopus 로고
    • Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome
    • DOI 10.1038/nsmb1071, PII N1071
    • Zofall M, Persinger J, Kassabov SR, Bartholomew B (2006) Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome. Nat Struct Mol Biol 13:339-346. (Pubitemid 43873505)
    • (2006) Nature Structural and Molecular Biology , vol.13 , Issue.4 , pp. 339-346
    • Zofall, M.1    Persinger, J.2    Kassabov, S.R.3    Bartholomew, B.4
  • 17
    • 72949099482 scopus 로고    scopus 로고
    • The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes
    • Racki LR, et al. (2009) The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes. Nature 462:1016-1021.
    • (2009) Nature , vol.462 , pp. 1016-1021
    • Racki, L.R.1
  • 18
    • 73049098277 scopus 로고    scopus 로고
    • Predicting nucleosome positions on the DNA: Combining intrinsic sequence preferences and remodeler activities
    • Teif VB, Rippe K (2009) Predicting nucleosome positions on the DNA: Combining intrinsic sequence preferences and remodeler activities. Nucleic Acids Res 37:5641-5655.
    • (2009) Nucleic Acids Res , vol.37 , pp. 5641-5655
    • Teif, V.B.1    Rippe, K.2
  • 20
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie DT (1977) Exact stochastic simulation of coupled chemical reactions. J Phys Chem 81:2340-2361.
    • (1977) J Phys Chem , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 21
    • 52949092297 scopus 로고    scopus 로고
    • Preferentially quantized linker DNA lengths in saccharomyces cerevisiae
    • Wang JP, et al. (2008) Preferentially quantized linker DNA lengths in saccharomyces cerevisiae. PLoS Comput Biol 4:e1000175.
    • (2008) PLoS Comput Biol , vol.4
    • Wang, J.P.1
  • 23
    • 33750078425 scopus 로고    scopus 로고
    • Filling of the one-dimensional lattice by k-mers proceeds via fast power-law-like kinetics
    • Ranjith P, Marko JF (2006) Filling of the one-dimensional lattice by k-mers proceeds via fast power-law-like kinetics. Phys Rev E 74:041602.
    • (2006) Phys Rev E , vol.74 , pp. 041602
    • Ranjith, P.1    Marko, J.F.2
  • 25
    • 0009678441 scopus 로고    scopus 로고
    • Erratum: Polymer reptation and nucleosome repositioning [Phys. Rev. Lett. 86, 4414 (2001)]
    • Schiessel H, Widom J, Bruinsma RF, Gelbart WM (2002) Erratum: Polymer reptation and nucleosome repositioning [Phys. Rev. Lett. 86, 4414 (2001)]. Phys Rev Lett 88:129902.
    • (2002) Phys Rev Lett , vol.88 , pp. 129902
    • Schiessel, H.1    Widom, J.2    Bruinsma, R.F.3    Gelbart, W.M.4
  • 26
    • 60349089645 scopus 로고    scopus 로고
    • Nucleosome positioning and gene regulation: Advances through genomics
    • Jiang C, Pugh BF (2009) Nucleosome positioning and gene regulation: Advances through genomics. Nat Rev Genet 10:161-172.
    • (2009) Nat Rev Genet , vol.10 , pp. 161-172
    • Jiang, C.1    Pugh, B.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.