Characterization of Genes for Polyamine Modulon

Methods in Molecular Biology

Volumn 720, Issue , 2011, Pages 51-65

  Igarashi, Kazuei ^a   Kashiwagi, Keiko ^b  

^a CHIBA UNIVERSITY   (Japan)

^b CHIBA INSTITUTE OF SCIENCE   (Japan)

Author keywords

Cell growth; Cell viability; Polyamine modulon; Polyamine RNA interaction; Protein synthesis; Spermidine

Indexed keywords

CELL EXTRACT; MESSENGER RNA; POLYAMINE; PROTEIN;

ANIMAL; ARTICLE; CHEMISTRY; CONFORMATION; ESCHERICHIA COLI; GENETICS; IMMUNOPRECIPITATION; MASS SPECTROMETRY; METABOLISM; MOLECULAR GENETICS; MOUSE; MULTIGENE FAMILY; MUTATION; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PROTEIN SYNTHESIS; STAINING; TUMOR CELL LINE; TWO DIMENSIONAL GEL ELECTROPHORESIS; WESTERN BLOTTING;

ANIMALS; BASE SEQUENCE; BLOTTING, NORTHERN; BLOTTING, WESTERN; CELL EXTRACTS; CELL LINE, TUMOR; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ESCHERICHIA COLI; IMMUNOPRECIPITATION; MASS SPECTROMETRY; MICE; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; MUTATION; NUCLEIC ACID CONFORMATION; POLYAMINES; PROTEIN BIOSYNTHESIS; PROTEINS; RNA, MESSENGER; STAINING AND LABELING;

EID: 79956198448     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-034-8_3     Document Type: Chapter

References (35)

1. Cohen SS (1998) A guide to polyamines. Oxford University Press, New York, pp 1–543
2. Igarashi K, Kashiwagi K (2000) Polyamines: mysterious modulators of cellular functions. Biochem Biophys Res Commun 271:559–564
3. Watanabe S, Kusama-Eguchi K, Kobayashi H, Igarashi K (1991) Estimation of polyamine binding to macromolecules and ATP in bovine lymphocytes and rat liver. J Biol Chem 266:20803–20809
4. Miyamoto S, Kashiwagi K, Ito K, Watanabe S, Igarashi K (1993) Estimation of polyamine distribution and polyamine stimulation of protein synthesis in Escherichia coli. Arch Biochem Biophys 300:63–68
5. Cunningham-Rundles S, Maas WK (1975) Isolation, characterization, and mapping of Escherichia coli mutants blocked in the synthesis of ornithine decarboxylase. J Bacteriol 124:791–799
6. Linderoth N, Morris DR (1983) Structural specificity of the triamines sym-homospermidine and aminopropylcadaverine in stimulating growth of spermidine auxotrophs of Escherichia coli. Biochem Biophys Res Commun 117:616–622
7. Hafner EW, Tabor CW, Tabor H (1979) Mutants of Escherichia coli that do not contain 1, 4-diaminobutane (putrescine) or spermidine. J Biol Chem 254:12419–12426
8. Kashiwagi K, Miyaji A, Ikeda S, Tobe T, Sasakawa C, Igarashi K (1992) Increase of sensitivity to aminoglycoside antibiotics by polyamine-induced protein (oligopeptide-binding protein) in Escherichia coli. J Bacteriol 174:4331–4337
9. Kashiwagi K, Watanabe R, Igarashi K (1994) Involvement of ribonuclease III in the enhancement of expression of the speF-potE operon encoding inducible ornithine decarboxylase
10. Kashiwagi K, Yamaguchi Y, Sakai Y, Kobayashi H, Igarashi K (1990) Identification of the polyamine-induced protein as a periplasmic oligopeptide binding protein. J Biol Chem 265:8387–8391
11. Igarashi K, Saisho T, Yuguchi M, Kashiwagi K (1997) Molecular mechanism of polyamine stimulation of the synthesis of oligopeptide-binding protein. J Biol Chem 272:4058–4064
12. Higashi K, Terui Y, Suganami A, Tamura Y, Nishimura K, Kashiwagi K, Igarashi K (2008) Selective structural change by spermidine in the bulged-out region of double-stranded RNA and its effect on RNA function. J Biol Chem 283:32989–32994
13. Shapira SK, Chou J, Richaud FV, Casadaban MJ (1983) New versatile plasmid vectors for expression of hybrid proteins coded by a cloned gene fused to lacZ gene sequences encoding an enzymatically active carboxy-ter-minal portion of b-galactosidase. Gene 25:71–82
14. Masaki T, Tanabe M, Nakamura K, Soejima M (1981) Studies on a new proteolytic enzyme from Achromobacter lyticus M497-1. I. Purification and some enzymatic properties. Biochim Biophys Acta 660:44–50
15. Emory SA, Belasco JG (1990) The ompA 5’ untranslated RNA segment functions in Escherichia coli as a growth-rate-regulated mRNA stabilizer whose activity is unrelated to translational efficiency. J Bacteriol 172:4472–4481
16. Sambrook J, Fritsch EF, Maniatis T (2001) Extraction, purification, and analysis of mRNA from eukaryotic cells, Chapter 7. In: Sambrook J, Russell DW (eds) Molecular cloning: A Laboratory Manual, 3rd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
17. Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951) Protein measurement with the Folin phenol reagent. J Biol Chem 193:265–275
18. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London) 227:680–685
19. Nielsen PJ, Manchester KL, Towbin H, Gordon J, Thomas G (1982) The phosphorylation of ribosomal protein S6 in rat tissues following cycloheximide injection, in diabetes, and after denervation of diaphragm. A simple immunological determination of the extent of S6 phosphorylation on protein blots. J Biol Chem 257:12316–12321
20. Philipson L, Andersson P, Olshevsky U, Weinberg R, Baltimore D, Gesteland R (1978)
21. Ho SN, Hunt HD, Horton RM, Pullen JK, Pease LR (1989) Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77:51–59
22. Ayusawa D, Iwata K, Seno T (1981) Alteration of ribonucleotide reductase in aphidicolin-resistant mutants of mouse FM3A cells with associated resistance to arabinosyladenine and arabinosylcytosine. Somatic Cell Genet 7:27–42
23. Yoshida M, Meksuriyen D, Kashiwagi K, Kawai G, Igarashi K (1999) Polyamine stimulation of the synthesis of oligopeptide-binding protein (OppA). Involvement of a structural change of the Shine-Dalgarno sequence and the initiation codon AUG in OppA mRNA. J Biol Chem 274:22723–22728
24. Yoshida M, Kashiwagi K, Shigemasa A, Taniguchi S, Yamamoto K, Makinoshima H, Ishihama A, Igarashi K (2004) A unifying model for the role of polyamines in bacterial cell growth, the polyamine modulon. J Biol Chem 279:46008–46013
25. Terui Y, Higashi K, Taniguchi S, Shigemasa A, Nishimura K, Yamamoto K, Kashiwagi K, Ishihama A, Igarashi K (2007) Enhancement of the synthesis of RpoN, Cra and H-NS by polyamines at the level of translation in Escherichia coli cultured with glucose and glutamate. J Bacteriol 189:2359–2368
26. Terui Y, Higashi K, Tabei Y, Tomitori H, Yamamoto K, Ishihama A, Igarashi K, Kashiwagi K (2009) Enhancement of the synthesis of RpoE and StpA by polyamines at the level of translation in Escherichia coli under heat shock conditions. J Bacteriol 191:5348–5357
27. 28 subunit. J Biol Chem 276:16289–16295
28. 38 Subunit by suppression of an amber termination codon in the open reading frame. J Biol Chem 277:37139–37146
29. Higashi K, Kashiwagi K, Taniguchi S, Terui Y, Yamamoto K, Ishihama A, Igarashi K (2006) Enhancement of +1 frameshift by polyamines during translation of polypeptide release factor 2 in Escherichia coli. J Biol Chem 281:9527–9537
30. Higashi K, Terui Y, Inomata E, Katagiri D, Nomura Y, Someya T, Nishimura K, Kashiwagi K, Kawai G, Igarashi K (2008) Selective structural change of bulged-out region of double-stranded RNA containing bulged nucleotides by spermidine. Biochem Biophys Res Commun 370:572–577
31. Nishimura K, Murozumi K, Shirahata A, Park MH, Kashiwagi K, Igarashi K (2005) Independent roles of eIF5A and polyamines in cell proliferation. Biochem J 385:779–785
32. Nishimura K, Nakatsu F, Kashiwagi K, Ohno H, Saito T, Igarashi K (2002) Essential role of S-adenosylmethionine decarboxylase in mouse embryonic development. Genes Cells 7:41–47
33. Nishimura K, Okudaira H, Ochiai E, Higashi K, Kaneko M, Ishii I, Nishimura T, Dohmae N, Kashiwagi K, Igarashi K (2009) Identification of proteins whose synthesis is preferentially enhanced by polyamines at the level of translation in mammalian cells. Int J Biochem Cell Biol 41:2251–2261
34. Chappell SA, Dresios J, Edelman GM, Mauro VP (2006) Ribosomal shunting mediated by a translational enhancer element that base pairs to 18S rRNA. Proc Natl Acad Sci USA 103:9488–9493
35. Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406–3415