Identification of human papillomavirus type 58 lineages and the distribution worldwide

Journal of Infectious Diseases

Volumn 203, Issue 11, 2011, Pages 1565-1573

  Chan, Paul K S ^a   Luk, Alfred C S ^a   Park, Jong Sup ^b   Smith McCune, Karen K ^c,d   Palefsky, Joel M ^c   Konno, Ryo ^e   Giovannelli, Lucia ^f   Coutlée, Francois ^g   Hibbitts, Samantha ^h   Chu, Tang Yuan ⁱ   Settheetham Ishida, Wannapa ^j   Picconi, María Alejandra ^k   Ferrera, Annabelle ^l   De Marco, Federico ^m   Woo, Yin Ling ⁿ   Raiol, Tainá ^o   Piña Sánchez, Patricia ^p   Cheung, Jo L K ^a   Bae, Jeong Hoon ^b   Chirenje, Mike Z ^q   Magure, Tsitsi ^q   Moscicki, Anna Barbara ^c,d   Fiander, Alison N ^h   Stefano, Rosa Di ^f   Cheung, Tak Hong ^r   Yu, May M Y ^r   Tsui, Stephen K W ^s   Pim, David ^t   Banks, Lawrence ^t   more..

^a and Hong Kong Branch of CAS Center for Excellence in Animal Evolution and Genetics   (Hong Kong)

^b The Catholic University of Korea   (South Korea)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e JICHI MEDICAL UNIVERSITY   (Japan)

^f UNIVERSITY OF PALERMO   (Italy)

^g CENTRE HOSPITALIER DE L UNIVERSITÉ DE MONTRÉAL   (Canada)

^h CARDIFF UNIVERSITY   (United Kingdom)

ⁱ TZU CHI UNIVERSITY   (Taiwan)

^j KHON KAEN UNIVERSITY   (Thailand)

^k INSTITUTO NACIONAL DE ENFERMEDADES INFECCIOSAS   (Argentina)

^l NATIONAL AUTONOMOUS UNIVERSITY OF HONDURAS   (Honduras)

^m REGINA ELENA NATIONAL CANCER INSTITUTE   (Italy)

ⁿ UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^o UNIVERSITY OF BRASILIA   (Brazil)

^p HOSPITAL DE ONCOLOGÍA   (Mexico)

^q UNIVERSITY OF ZIMBABWE   (Zimbabwe)

^r CHINESE UNIVERSITY OF HONG KONG   (Hong Kong)

^s CHINESE UNIVERSITY OF HONG KONG   (Hong Kong)

^t INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Italy)

more..

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT;

AFRICA; ARTICLE; ASIA; CANCER PATIENT; CONTROLLED STUDY; EUROPE; FEMALE; GENE CLUSTER; GENETIC ANALYSIS; GENETIC VARIABILITY; HUMAN; HUMAN PAPILLOMAVIRUS TYPE 58; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; UNINDEXED SEQUENCE; VIRUS GENOME; VIRUS IDENTIFICATION; WESTERN HEMISPHERE;

AFRICA; ALPHAPAPILLOMAVIRUS; AMERICAS; ASIA; BASE SEQUENCE; CERVIX UTERI; CHI-SQUARE DISTRIBUTION; EUROPE; FEMALE; HUMANS; MOLECULAR SEQUENCE DATA; PAPILLOMAVIRUS INFECTIONS; PHYLOGENY; PHYLOGEOGRAPHY; SEQUENCE ALIGNMENT; UTERINE CERVICAL NEOPLASMS;

EID: 79956191768     PISSN: 00221899     EISSN: None     Source Type: Journal    
DOI: 10.1093/infdis/jir157     Document Type: Article

References (25)

1. Schiffman M, Castle PE, Jeronimo J, Rodriguez AC, Wacholder S. Human papillomavirus and cervical cancer. Lancet 2007; 370:890-907. (Pubitemid 47371147)
2. FUTURE II Study Group. Quadrivalent vaccine against human papillomavirus to prevent high-grade cervical lesions. N Engl J Med 2007; 356:1915-27.
3. Paavonen J, Naud P, Salmerón J, et al. Efficacy of human papillomavirus (HPV)-16/18 AS04-adjuvanted vaccine against cervical infection and precancer caused by oncogenic HPV types (PATRICIA): final analysis of a double-blind, randomised study in young women. Lancet 2009; 374:301-14.
4. Smith JS, Lindsay L, Hoots B, et al. Human papillomavirus type distribution in invasive cervical cancer and high-grade cervical lesions: a meta-analysis update. Int J Cancer 2007; 121:621-32. (Pubitemid 46986496)
5. Muñoz N, Bosch FX, de Sanjosé S, et al. Epidemiologic classification of human papillomavirus types associated with cervical cancer. N Engl J Med 2003; 348:518-27. (Pubitemid 36159887)
6. Muñoz N, Bosch FX, Castellsagué X, et al. Against which human papillomavirus types shall we vaccinate and screen? The international perspective. Int J Cancer 2004; 111:278-85. (Pubitemid 38924707)
7. Huang S, Afonina I, Miller BA, Beckmann AM. Human papillomavirus types 52 and 58 are prevalent in cervical cancers from Chinese women. Int J Cancer 1997; 70:408-11. (Pubitemid 27107267)
8. Hwang T. Detection and typing of human papillomavirus DNA by PCR using consensus primers in various cervical lesions of Korean women. J Korean Med Sci 1999; 14:593-9.
9. Chan PK, Ho WC, Yu MY, et al. Distribution of human papillomavirus types in cervical cancers in Hong Kong: current situation and changes over the last decades. Int J Cancer 2009; 125:1671-7.
10. Ding DC, Hsu HC, Huang RL, et al. Type-specific distribution of HPV along the full spectrum of cervical carcinogenesis in Taiwan: an indication of viral oncogenic potential. Eur J Obstet Gynecol Reprod Biol 2008; 140:245-51.
11. Asato T, Maehama T, Nagai Y, Kanazawa K, Uezato H, Kariya K. A large case-control study of cervical cancer risk associated with human papillomavirus infection in Japan, by nucleotide sequencing-based genotyping. J Infect Dis 2004; 189:1829-32. (Pubitemid 38657219)
12. Bao YP, Li N, Smith JS, Qiao YL; ACCPAB members. Human papillomavirus type distribution in women from Asia: a meta-analysis. Int J Gynecol Cancer 2008; 18:71-9.
13. Chan DP, Cheung TH, Tam AO, et al. Risk association of HLA-A allele and high-risk HPV infection for cervical neoplasia in Chinese women. J Infect Dis 2005; 192:1749-56. (Pubitemid 41587825)
14. Chan PK, Lam CW, Cheung TH, et al. Association of human papillomavirus type 58 variant with the risk of cervical cancer. J Natl Cancer Inst 2002; 94:1249-53. (Pubitemid 34993876)
15. Swofford DL. PAUP: phylogenetic analysis using parsimony (*and other methods), version 4.0 b10. Sunderland, Massachusetts: Sinauer, 2002.
16. Posada D, Crandall KA. Modeltest: testing the model of DNA substitution. Bioinformatics 1998; 14:817-8. (Pubitemid 28552116)
17. Huelsenbeck JP, Ronquist F. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 2001; 17:754-5.
18. Bernard HU, Calleja-Macias IE, Dunn ST. Genome variation of human papillomavirus types: phylogenetic and medical implications. Int J Cancer 2006; 118:1071-6. (Pubitemid 43185592)
19. Sichero L, Villa LL. Epidemiological and functional implications of molecular variants of human papillomavirus. Braz J Med Biol Res 2006; 39:707-17. (Pubitemid 43880927)
20. Calleja-Macias IE, Villa LL, Prado JC, et al. Worldwide genomic diversity of the high-risk human papillomavirus types 31, 35, 52, and 58, four close relatives of human papillomavirus type 16. J Virol 2005; 79:13630-40.
21. Eckert KA, Kunkel TA. DNA polymerase fidelity and the polymerase chain reaction. PCR Methods Applic 1991; 1:17-24.
22. Stewart AC, Eriksson AM, Manos MM, et al. Intratype variation in 12 human papillomavirus types: a worldwide perspective. J Virol 1996; 70:3127-36. (Pubitemid 26121930)
23. Chan SY, Ho L, Ong CK, et al. Molecular variants of human papillomavirus type 16 from four continents suggest ancient pandemic spread of the virus and its coevolution with humankind. J Virol 1992; 66:2057-66.
24. Ho L, Chan SY, Burk RD, et al. The genetic drift of human papillomavirus type 16 is a means of reconstructing prehistoric viral spread and the movement of ancient human populations. J Virol 1993; 67:6413-23.
25. Li Y, Li Z, He Y, et al. Phylogeographic analysis of human papillomavirus 58. Sci China Ser C-Life Sci 2009; 52:1164-72.