-
1
-
-
0034608861
-
Escherichia coli CspA-family RNA chaperones are transcription antiterminators
-
Bae W, Xia B, Inouye M & Severinov K (2000) Escherichia coli CspA-family RNA chaperones are transcription antiterminators. P Natl Acad Sci USA 97: 7784-7789.
-
(2000)
P Natl Acad Sci USA
, vol.97
, pp. 7784-7789
-
-
Bae, W.1
Xia, B.2
Inouye, M.3
Severinov, K.4
-
3
-
-
3042615963
-
Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1
-
Baliga NS, Bjork SJ, Bonneau R et al. (2004) Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1. Genome Res 14: 1025-1035.
-
(2004)
Genome Res
, vol.14
, pp. 1025-1035
-
-
Baliga, N.S.1
Bjork, S.J.2
Bonneau, R.3
-
4
-
-
0033965637
-
Cold-tolerant alkane-degrading Rhodococcus species from Antarctica
-
Bej AK, Saul D & Aislabie J (2000) Cold-tolerant alkane-degrading Rhodococcus species from Antarctica. Polar Biol 23: 100-105.
-
(2000)
Polar Biol
, vol.23
, pp. 100-105
-
-
Bej, A.K.1
Saul, D.2
Aislabie, J.3
-
5
-
-
0034511264
-
Ribosomal DNA and resolution of branching order among the ascomycota: how many nucleotides are enough?
-
Berbee ML, Carmean DA & Winka K (2000) Ribosomal DNA and resolution of branching order among the ascomycota: how many nucleotides are enough? Mol Phylogenet Evol 17: 337-344.
-
(2000)
Mol Phylogenet Evol
, vol.17
, pp. 337-344
-
-
Berbee, M.L.1
Carmean, D.A.2
Winka, K.3
-
6
-
-
0030023653
-
Cold shock and cold acclimation proteins in the psychrotrophic bacterium Arthrobacter globiformis SI55
-
Berger F, Morellet N, Menu F & Potier P (1996) Cold shock and cold acclimation proteins in the psychrotrophic bacterium Arthrobacter globiformis SI55. J Bacteriol 178: 2999-3007.
-
(1996)
J Bacteriol
, vol.178
, pp. 2999-3007
-
-
Berger, F.1
Morellet, N.2
Menu, F.3
Potier, P.4
-
7
-
-
33645498972
-
Psychrophilic microorganisms: challenges for life
-
D'Amico S, Collins T, Marx JC, Feller G & Gerday C (2006) Psychrophilic microorganisms: challenges for life. EMBO Rep 7: 385-389.
-
(2006)
EMBO Rep
, vol.7
, pp. 385-389
-
-
D'Amico, S.1
Collins, T.2
Marx, J.C.3
Feller, G.4
Gerday, C.5
-
9
-
-
0032483047
-
Solution NMR structure and backbone dynamics of the major cold-shock protein (CspA) from Escherichia coli: evidence for conformational dynamics in the single-stranded RNA-binding site
-
Feng W, Tejero R, Zimmerman DE, Inouye M & Montelione GT (1998) Solution NMR structure and backbone dynamics of the major cold-shock protein (CspA) from Escherichia coli: evidence for conformational dynamics in the single-stranded RNA-binding site. Biochemistry 37: 10881-10896.
-
(1998)
Biochemistry
, vol.37
, pp. 10881-10896
-
-
Feng, W.1
Tejero, R.2
Zimmerman, D.E.3
Inouye, M.4
Montelione, G.T.5
-
10
-
-
0031463654
-
Detection and speciation of bacteria through PCR using universal major cold-shock protein primer oligomers
-
Francis KP & Stewart GS (1997) Detection and speciation of bacteria through PCR using universal major cold-shock protein primer oligomers. J Ind Microbiol Biot 19: 286-229.
-
(1997)
J Ind Microbiol Biot
, vol.19
, pp. 286-229
-
-
Francis, K.P.1
Stewart, G.S.2
-
11
-
-
34547617526
-
Structure and function of cold shock proteins in archaea
-
Giaquinto L, Curmi PM, Siddiqui KS, Poljak A, DeLong E, DasSarma S & Cavicchioli R (2007) Structure and function of cold shock proteins in archaea. J Bacteriol 189: 5738-5748.
-
(2007)
J Bacteriol
, vol.189
, pp. 5738-5748
-
-
Giaquinto, L.1
Curmi, P.M.2
Siddiqui, K.S.3
Poljak, A.4
DeLong, E.5
DasSarma, S.6
Cavicchioli, R.7
-
12
-
-
0031658803
-
A superfamily of proteins that contain the cold-shock domain
-
Graumann PL & Marahiel MA (1998) A superfamily of proteins that contain the cold-shock domain. Trends Biochem Sci 23: 286-290.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 286-290
-
-
Graumann, P.L.1
Marahiel, M.A.2
-
13
-
-
0029760156
-
Cold shock and cold acclimation protein in the psychrotrophic bacterium Pseudomonas putida Q5 and its transconjugants
-
Gumley WE & Inniss WE (1996) Cold shock and cold acclimation protein in the psychrotrophic bacterium Pseudomonas putida Q5 and its transconjugants. Can J Microbiol 42: 798-803.
-
(1996)
Can J Microbiol
, vol.42
, pp. 798-803
-
-
Gumley, W.E.1
Inniss, W.E.2
-
14
-
-
0031907673
-
Growth, survival and characterization of cspA in Salmonella enteritidis following cold shock
-
Jeffreys AG, Hak KM, Steffan RJ, Foster JW & Bej AK (1998) Growth, survival and characterization of cspA in Salmonella enteritidis following cold shock. Curr Microbiol 36: 29-35.
-
(1998)
Curr Microbiol
, vol.36
, pp. 29-35
-
-
Jeffreys, A.G.1
Hak, K.M.2
Steffan, R.J.3
Foster, J.W.4
Bej, A.K.5
-
15
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones DT (1999) Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 292: 195-202.
-
(1999)
J Mol Biol
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
16
-
-
72949116993
-
Toxins Hha and CspD and small RNA regulator Hfq are involved in persister cell formation through MqsR in Escherichia coli
-
Kim Y & Wood TK (2010) Toxins Hha and CspD and small RNA regulator Hfq are involved in persister cell formation through MqsR in Escherichia coli. Biochem Bioph Res Co 391: 209-213.
-
(2010)
Biochem Bioph Res Co
, vol.391
, pp. 209-213
-
-
Kim, Y.1
Wood, T.K.2
-
17
-
-
77953551929
-
Escherichiacoli toxin/antitoxin pair MqsR/MqsA regulate toxin CspD
-
Kim Y, Wang X, Zhang XS, Grigoriu S, Page R, Peti W & Wood TK (2010) Escherichiacoli toxin/antitoxin pair MqsR/MqsA regulate toxin CspD. Environ Microbiol 12: 1105-1121.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1105-1121
-
-
Kim, Y.1
Wang, X.2
Zhang, X.S.3
Grigoriu, S.4
Page, R.5
Peti, W.6
Wood, T.K.7
-
18
-
-
0034844324
-
Solution NMR structure of the cold-shock protein from the hyperthermophilic bacterium Thermotoga maritima
-
Kremer W, Schuler B, Harrieder S et al. (2001) Solution NMR structure of the cold-shock protein from the hyperthermophilic bacterium Thermotoga maritima. Eur J Biochem 268: 2527-2539.
-
(2001)
Eur J Biochem
, vol.268
, pp. 2527-2539
-
-
Kremer, W.1
Schuler, B.2
Harrieder, S.3
-
19
-
-
33846991935
-
Common mode of DNA binding to cold shock domains. Crystal structure of hexathymidine bound to the domain-swapped form of a major cold shock protein from Bacillus caldolyticus
-
Max KE, Zeeb M, Bienert R, Balbach J & Heinemann U (2007) Common mode of DNA binding to cold shock domains. Crystal structure of hexathymidine bound to the domain-swapped form of a major cold shock protein from Bacillus caldolyticus. FEBS J 274: 1265-1279.
-
(2007)
FEBS J
, vol.274
, pp. 1265-1279
-
-
Max, K.E.1
Zeeb, M.2
Bienert, R.3
Balbach, J.4
Heinemann, U.5
-
20
-
-
0016516090
-
Psychrophilic bacteria
-
Morita RY (1975) Psychrophilic bacteria. Bacteriol Rev 39: 144-167.
-
(1975)
Bacteriol Rev
, vol.39
, pp. 144-167
-
-
Morita, R.Y.1
-
21
-
-
0034615784
-
Thermal stability and atomic-resolution crystal structure of the Bacillus caldolyticus cold shock protein
-
Mueller U, Perl D, Schmid FX & Heinemann U (2000) Thermal stability and atomic-resolution crystal structure of the Bacillus caldolyticus cold shock protein. J Mol Biol 297: 975-988.
-
(2000)
J Mol Biol
, vol.297
, pp. 975-988
-
-
Mueller, U.1
Perl, D.2
Schmid, F.X.3
Heinemann, U.4
-
22
-
-
0028234777
-
Solution NMR structure of the major cold shock protein (CspA) from Escherichia coli: identification of a binding epitope for DNA
-
Newkirk K, Feng W, Jiang W, Tejero R, Emerson SD, Inouye M & Montelione GT (1994) Solution NMR structure of the major cold shock protein (CspA) from Escherichia coli: identification of a binding epitope for DNA. P Natl Acad Sci USA 91: 5114-5118.
-
(1994)
P Natl Acad Sci USA
, vol.91
, pp. 5114-5118
-
-
Newkirk, K.1
Feng, W.2
Jiang, W.3
Tejero, R.4
Emerson, S.D.5
Inouye, M.6
Montelione, G.T.7
-
23
-
-
67349137629
-
Identification of PprM: a modulator of the PprI-dependent DNA damage response in Deinococcus radiodurans
-
Ohba H, Satoh K, Sghaier H, Yanagisawa T & Narumi I (2009) Identification of PprM: a modulator of the PprI-dependent DNA damage response in Deinococcus radiodurans. Extremophiles 13: 471-479.
-
(2009)
Extremophiles
, vol.13
, pp. 471-479
-
-
Ohba, H.1
Satoh, K.2
Sghaier, H.3
Yanagisawa, T.4
Narumi, I.5
-
24
-
-
0036922947
-
Cold tolerance of Pseudomonas sp.30-3 isolated from oil-contaminated soil, Antarctica
-
Panicker G, Aislabie J, Saul D & Bej AK (2002) Cold tolerance of Pseudomonas sp.30-3 isolated from oil-contaminated soil, Antarctica. Polar Biol 25: 5-11.
-
(2002)
Polar Biol
, vol.25
, pp. 5-11
-
-
Panicker, G.1
Aislabie, J.2
Saul, D.3
Bej, A.K.4
-
25
-
-
77951767564
-
Occurrence and distribution of capB in Antarctic microorganisms and study of its structure and regulation in the Antarctic biodegradative Pseudomonas sp. 30/3
-
Panicker G, Mojib N, Nakatsuji T, Aislabie J & Bej AK (2010) Occurrence and distribution of capB in Antarctic microorganisms and study of its structure and regulation in the Antarctic biodegradative Pseudomonas sp. 30/3. Extremophiles 14: 171-183.
-
(2010)
Extremophiles
, vol.14
, pp. 171-183
-
-
Panicker, G.1
Mojib, N.2
Nakatsuji, T.3
Aislabie, J.4
Bej, A.K.5
-
27
-
-
1442277681
-
The mechanism of nucleic acid melting by a CspA family protein
-
Phadtare S, Inouye M & Severinov K (2004) The mechanism of nucleic acid melting by a CspA family protein. J Mol Biol 337: 147-155.
-
(2004)
J Mol Biol
, vol.337
, pp. 147-155
-
-
Phadtare, S.1
Inouye, M.2
Severinov, K.3
-
28
-
-
41949091189
-
Structure of the cold-shock domain protein from Neisseria meningitidis reveals a strand-exchanged dimer
-
Ren J, Nettleship JE, Sainsbury S, Saunders NJ & Owens RJ (2008) Structure of the cold-shock domain protein from Neisseria meningitidis reveals a strand-exchanged dimer. Acta Crystallogr F 64: 247-251.
-
(2008)
Acta Crystallogr F
, vol.64
, pp. 247-251
-
-
Ren, J.1
Nettleship, J.E.2
Sainsbury, S.3
Saunders, N.J.4
Owens, R.J.5
-
29
-
-
77957242885
-
Ultra-fast FFT protein docking on graphics processors
-
Ritchie DW & Venkatraman V (2010) Ultra-fast FFT protein docking on graphics processors. Bioinformatics 26: 2398-2405.
-
(2010)
Bioinformatics
, vol.26
, pp. 2398-2405
-
-
Ritchie, D.W.1
Venkatraman, V.2
-
30
-
-
0028306109
-
Crystal structure of CspA, the major cold shock protein of Escherichia coli
-
Schindelin H, Jiang W, Inouye M & Heinemann U (1994) Crystal structure of CspA, the major cold shock protein of Escherichia coli. P Natl Acad Sci USA 91: 5119-5123.
-
(1994)
P Natl Acad Sci USA
, vol.91
, pp. 5119-5123
-
-
Schindelin, H.1
Jiang, W.2
Inouye, M.3
Heinemann, U.4
-
31
-
-
0033525071
-
The family of cold shock proteins of Bacillus subtilis. Stability and dynamics in vitro and in vivo
-
Schindler T, Graumann PL, Perl D, Ma S, Schmid FX & Marahiel MA (1999) The family of cold shock proteins of Bacillus subtilis. Stability and dynamics in vitro and in vivo. J Biol Chem 274: 3407-3413.
-
(1999)
J Biol Chem
, vol.274
, pp. 3407-3413
-
-
Schindler, T.1
Graumann, P.L.2
Perl, D.3
Ma, S.4
Schmid, F.X.5
Marahiel, M.A.6
-
32
-
-
0027248819
-
Structure in solution of the major cold-shock protein from Bacillus subtilis
-
Schnuchel A, Wiltscheck R, Czisch M et al. (1993) Structure in solution of the major cold-shock protein from Bacillus subtilis. Nature 364: 169-171.
-
(1993)
Nature
, vol.364
, pp. 169-171
-
-
Schnuchel, A.1
Wiltscheck, R.2
Czisch, M.3
-
33
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
Soding J, Biegert A & Lupas AN (2005) The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res 33: W244-W248.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Soding, J.1
Biegert, A.2
Lupas, A.N.3
-
34
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura KDJ, Nei M & Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.D.J.1
Nei, M.2
Kumar, S.3
-
35
-
-
77951961719
-
How significant is a protein structure similarity with TM-score=0.5?
-
Xu J & Zhang Y (2010) How significant is a protein structure similarity with TM-score=0.5? Bioinformatics 26: 889-895.
-
(2010)
Bioinformatics
, vol.26
, pp. 889-895
-
-
Xu, J.1
Zhang, Y.2
-
36
-
-
0030856635
-
Growth-phase-dependent expression of cspD, encoding a member of the CspA family in Escherichia coli
-
Yamanaka K & Inouye M (1997) Growth-phase-dependent expression of cspD, encoding a member of the CspA family in Escherichia coli. J Bacteriol 179: 5126-5130.
-
(1997)
J Bacteriol
, vol.179
, pp. 5126-5130
-
-
Yamanaka, K.1
Inouye, M.2
-
37
-
-
0028236749
-
Cloning, sequencing, and characterization of multicopy suppressors of a mukB mutation in Escherichia coli
-
Yamanaka K, Mitani T, Ogura T, Niki H & Hiraga S (1994) Cloning, sequencing, and characterization of multicopy suppressors of a mukB mutation in Escherichia coli. Mol Microbiol 13: 301-312.
-
(1994)
Mol Microbiol
, vol.13
, pp. 301-312
-
-
Yamanaka, K.1
Mitani, T.2
Ogura, T.3
Niki, H.4
Hiraga, S.5
-
38
-
-
0035057105
-
CspD, a novel DNA replication inhibitor induced during the stationary phase in Escherichia coli
-
Yamanaka K, Zheng W, Crooke E, Wang YH & Inouye M (2001) CspD, a novel DNA replication inhibitor induced during the stationary phase in Escherichia coli. Mol Microbiol 39: 1572-1584.
-
(2001)
Mol Microbiol
, vol.39
, pp. 1572-1584
-
-
Yamanaka, K.1
Zheng, W.2
Crooke, E.3
Wang, Y.H.4
Inouye, M.5
-
39
-
-
17644392830
-
TM-align: a protein structure alignment algorithm based on the TM-score
-
Zhang Y & Skolnick J (2005) TM-align: a protein structure alignment algorithm based on the TM-score. Nucleic Acids Res 33: 2302-2309.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2302-2309
-
-
Zhang, Y.1
Skolnick, J.2
|