메뉴 건너뛰기




Volumn 2011, Issue , 2011, Pages

TRNA/mRNA mimicry by tmRNA and SmpB in trans-Translation

Author keywords

[No Author keywords available]

Indexed keywords

AMINOACYL TRANSFER RNA; GUANOSINE TRIPHOSPHATASE; HYDROXYL RADICAL; MESSENGER RNA; RIBOSOME RNA; RNA 16S; SMPB; TMRNA; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 79956103883     PISSN: 20900201     EISSN: 2090021X     Source Type: Journal    
DOI: 10.4061/2011/130581     Document Type: Review
Times cited : (7)

References (81)
  • 1
    • 0030024281 scopus 로고    scopus 로고
    • Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
    • Keiler K. C., Waller P. R. H., Sauer R. T., Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 1996 271 5251 990 993 2-s2.0-0030024281 (Pubitemid 26066397)
    • (1996) Science , vol.271 , Issue.5251 , pp. 990-993
    • Keiler, K.C.1    Waller, P.R.H.2    Sauer, R.T.3
  • 2
    • 0031584271 scopus 로고    scopus 로고
    • In vitro trans translation mediated by alanine-charged 10Sa RNA
    • DOI 10.1006/jmbi.1997.1011
    • Himeno H., Sato M., Tadaki T., Fukushima M., Ushida C., Muto A., In vitro trans translation mediated by alanine-charged 10Sa RNA. Journal of Molecular Biology 1997 268 5 803 808 2-s2.0-0031584271 10.1006/jmbi.1997.1011 (Pubitemid 27229164)
    • (1997) Journal of Molecular Biology , vol.268 , Issue.5 , pp. 803-808
    • Himeno, H.1    Sato, M.2    Tadaki, T.3    Fukushima, M.4    Ushida, C.5    Muto, A.6
  • 3
    • 0030432334 scopus 로고    scopus 로고
    • Structure and function of 10Sa RNA: Trans-translation system
    • DOI 10.1016/S0300-9084(97)86721-1
    • Muto A., Sato M., Tadaki T., Fukushima M., Ushida C., Himeno H., Structure and function of 10Sa RNA: trans -translation system. Biochimie 1996 78 11-12 985 991 2-s2.0-0030432334 10.1016/S0300-9084(97)86721-1 (Pubitemid 27193118)
    • (1996) Biochimie , vol.78 , Issue.11-12 , pp. 985-991
    • Muto, A.1    Sato, M.2    Tadaki, T.3    Fukushima, M.4    Ushida, C.5    Himeno, H.6
  • 4
    • 0031939779 scopus 로고    scopus 로고
    • A bacterial RNA that functions as both a tRNA and an mRNA
    • DOI 10.1016/S0968-0004(97)01159-6, PII S0968000497011596
    • Muto A., Ushida C., Himeno H., A bacterial RNA that functions as both a tRNA and an mRNA. Trends in Biochemical Sciences 1998 23 1 25 29 2-s2.0-0031939779 10.1016/S0968-0004(97)01159-6 (Pubitemid 28093990)
    • (1998) Trends in Biochemical Sciences , vol.23 , Issue.1 , pp. 25-29
    • Muto, A.1    Ushida, C.2    Himeno, H.3
  • 5
    • 0032079329 scopus 로고    scopus 로고
    • The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system
    • Gottesman S., Roche E., Zhou Y., Sauer R. T., The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system. Genes and Development 1998 12 9 1338 1347 2-s2.0-0032079329 (Pubitemid 28213409)
    • (1998) Genes and Development , vol.12 , Issue.9 , pp. 1338-1347
    • Gottesman, S.1    Roche, E.2    Zhou, Y.3    Sauer, R.T.4
  • 6
    • 2642666491 scopus 로고    scopus 로고
    • Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH)
    • Herman C., Thévenet D., Bouloc P., Walker G. C., D'Ari R., Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH). Genes and Development 1998 12 9 1348 1355 2-s2.0-2642666491 (Pubitemid 28213410)
    • (1998) Genes and Development , vol.12 , Issue.9 , pp. 1348-1355
    • Herman, C.1    Thevenet, D.2    Bouloc, P.3    Walker, G.C.4    D'Ari, R.5
  • 7
    • 34548569082 scopus 로고    scopus 로고
    • Lon protease degrades transfer-messenger RNA-tagged proteins
    • DOI 10.1128/JB.00860-07
    • Choy J. S., Aung L. L., Karzai A. W., Lon protease degrades transfer-messenger RNA-tagged proteins. Journal of Bacteriology 2007 189 18 6564 6571 2-s2.0-34548569082 10.1128/JB.00860-07 (Pubitemid 47397361)
    • (2007) Journal of Bacteriology , vol.189 , Issue.18 , pp. 6564-6571
    • Choy, J.S.1    Aung, L.L.2    Karzai, A.W.3
  • 8
    • 0037377346 scopus 로고    scopus 로고
    • SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs
    • DOI 10.1261/rna.2174803
    • Yamamoto Y., Sunohara T., Jojima K., Inada T., Aiba H., SsrA-mediated trans -translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs. RNA 2003 9 4 408 418 2-s2.0-0037377346 10.1261/rna.2174803 (Pubitemid 36356728)
    • (2003) RNA , vol.9 , Issue.4 , pp. 408-418
    • Yamamoto, Y.1    Sunohara, T.2    Jojima, K.3    Inada, T.4    Aiba, H.5
  • 9
    • 0032101712 scopus 로고    scopus 로고
    • Presence and location of modified nucleotides in Escherichia coli tmRNA: Structural mimicry with tRNA acceptor branches
    • DOI 10.1093/emboj/17.11.3188
    • Felden B., Hanawa K., Atkins J. F., Himeno H., Muto A., Gesteland R. F., McCloskey J. A., Crain P. F., Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches. EMBO Journal 1998 17 11 3188 3196 2-s2.0-0032101712 10.1093/emboj/17.11.3188 (Pubitemid 28254390)
    • (1998) EMBO Journal , vol.17 , Issue.11 , pp. 3188-3196
    • Felden, B.1    Hanawa, K.2    Atkins, J.F.3    Himeno, H.4    Muto, A.5    Gesteland, R.F.6    McCloskey, J.A.7    Crain, P.F.8
  • 10
    • 0029907105 scopus 로고    scopus 로고
    • Phylogenetic analysis of tmRNA secondary structure
    • Williams K. P., Bartel D. P., Phylogenetic analysis of tmRNA secondary structure. RNA 1996 2 12 1306 1310 2-s2.0-0029907105 (Pubitemid 26419224)
    • (1996) RNA , vol.2 , Issue.12 , pp. 1306-1310
    • Williams, K.P.1    Bartel, D.P.2
  • 11
    • 0030436199 scopus 로고    scopus 로고
    • Structural organization of Escherichia coli tmRNA
    • DOI 10.1016/S0300-9084(97)86720-X
    • Felden B., Himeno H., Muto A., Atkins J. F., Gesteland R. F., Structural organization of Escherichia coli tmRNA. Biochimie 1996 78 11-12 979 983 2-s2.0-0030436199 10.1016/S0300-9084(97)86720-X (Pubitemid 27193117)
    • (1996) Biochimie , vol.78 , Issue.11-12 , pp. 979-983
    • Felden, B.1    Himeno, H.2    Muto, A.3    Atkins, J.F.4    Gesteland, R.F.5
  • 12
    • 0031014984 scopus 로고    scopus 로고
    • Probing the structure of the Escherichia coli 10Sa RNA (tmRNA)
    • Felden B., Himeno H., Muto A., McCutcheon J. P., Atkins J. F., Gesteland R. F., Probing the structure of the Escherichia coli 10Sa RNA (tmRNA). RNA 1997 3 1 89 103 2-s2.0-0031014984 (Pubitemid 27030253)
    • (1997) RNA , vol.3 , Issue.1 , pp. 89-103
    • Felden, B.1    Himeno, H.2    Muto, A.3    McCutcheon, J.P.4    Atkins, J.F.5    Gesteland, R.F.6
  • 13
    • 0032511223 scopus 로고    scopus 로고
    • A nickel complex cleaves uridine in folded RNA structures: Application to E. coli tmRNA and related engineered molecules
    • DOI 10.1006/jmbi.1998.1813
    • Hickerson R. P., Watkins-Sims C. D., Burrows C. J., Atkins J. F., Gesteland R. F., Felden B., A nickel complex cleaves uridine in folded RNA structures: application to E. coli tmRNA and related engineered molecules. Journal of Molecular Biology 1998 279 3 577 587 2-s2.0-0032511223 10.1006/jmbi.1998.1813 (Pubitemid 28279466)
    • (1998) Journal of Molecular Biology , vol.279 , Issue.3 , pp. 577-587
    • Hickerson, R.P.1    Watkins-Sims, C.D.2    Burrows, C.J.3    Atkins, J.F.4    Gesteland, R.F.5    Felden, B.6
  • 14
    • 0033605218 scopus 로고    scopus 로고
    • Functional and structural analysis of a pseudoknot upstream of the tag-encoded sequence in E. coli tmRNA
    • DOI 10.1006/jmbi.1998.2487
    • Nameki N., Felden B., Atkins J. F., Gesteland R. F., Himeno H., Muto A., Functional and structural analysis of a pseudoknot upstream of the tag-encoded sequence in E. coli tmRNA. Journal of Molecular Biology 1999 286 3 733 744 2-s2.0-0033605218 10.1006/jmbi.1998.2487 (Pubitemid 29106214)
    • (1999) Journal of Molecular Biology , vol.286 , Issue.3 , pp. 733-744
    • Nameki, N.1    Felden, B.2    Atkins, J.F.3    Gesteland, R.F.4    Himeno, H.5    Muto, A.6
  • 15
    • 0028170454 scopus 로고
    • TRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis
    • 2-s2.0-0028170454
    • Ushida C., Himeno H., Watanabe T., Muto A., TRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis. Nucleic Acids Research 1994 22 16 3392 3396 2-s2.0-0028170454
    • (1994) Nucleic Acids Research , vol.22 , Issue.16 , pp. 3392-3396
    • Ushida, C.1    Himeno, H.2    Watanabe, T.3    Muto, A.4
  • 17
    • 0032840381 scopus 로고    scopus 로고
    • Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu
    • DOI 10.1017/S135583829999101X
    • Rudinger-Thirion J., Giege R., Felden B., Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu. RNA 1999 5 8 989 992 2-s2.0-0032840381 10.1017/S135583829999101X (Pubitemid 29365328)
    • (1999) RNA , vol.5 , Issue.8 , pp. 989-992
    • Rudinger-Thirion, J.1    Giege, R.2    Felden, B.3
  • 18
    • 0034646235 scopus 로고    scopus 로고
    • Kinetic parameters for tmRNA binding to alanyl-tRNA synthetase and elongation factor Tu from Escherichia coli
    • DOI 10.1021/bi992439d
    • Barends S., Wower J., Kraal B., Kinetic parameters for tmRNA binding to alanyl-tRNA synthetase and elongation factor Tu from Escherichia coli. Biochemistry 2000 39 10 2652 2658 2-s2.0-0034646235 10.1021/bi992439d (Pubitemid 30148918)
    • (2000) Biochemistry , vol.39 , Issue.10 , pp. 2652-2658
    • Barends, S.1    Wower, J.2    Kraal, B.3
  • 19
    • 0035890475 scopus 로고    scopus 로고
    • Importance of the conserved nucleotides around the tRNA-like structure of Escherichia coli transfer-messenger RNA for protein tagging
    • Hanawa-Suetsugu K., Bordeau V., Himeno H., Muto A., Felden B., Importance of the conserved nucleotides around the tRNA-like structure of Escherichia coli transfer-messenger RNA for protein tagging. Nucleic Acids Research 2001 29 22 4663 4673 2-s2.0-0035890475 (Pubitemid 33095027)
    • (2001) Nucleic Acids Research , vol.29 , Issue.22 , pp. 4663-4673
    • Hanawa-Suetsugu, K.1    Bordeau, V.2    Himeno, H.3    Muto, A.4    Felden, B.5
  • 20
    • 0037313461 scopus 로고    scopus 로고
    • TmRNA from Thermus thermophilus interaction with alanyl-tRNA synthetase and elongation factor Tu
    • DOI 10.1046/j.1432-1033.2003.03401.x
    • Stepanov V. G., Nyborg J., tmRNA from Thermus thermophilus interaction with alanyl-tRNA synthetase and elongation factor Tu. European Journal of Biochemistry 2003 270 3 463 475 2-s2.0-0037313461 10.1046/j.1432-1033.2003. 03401.x (Pubitemid 36177313)
    • (2003) European Journal of Biochemistry , vol.270 , Issue.3 , pp. 463-475
    • Stepanov, V.G.1    Nyborg, J.2
  • 21
    • 0345465673 scopus 로고    scopus 로고
    • SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA)
    • DOI 10.1093/emboj/18.13.3793
    • Karzai A. W., Susskind M. M., Sauer R. T., SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA). EMBO Journal 1999 18 13 3793 3799 2-s2.0-0345465673 10.1093/emboj/18.13.3793 (Pubitemid 29308858)
    • (1999) EMBO Journal , vol.18 , Issue.13 , pp. 3793-3799
    • Wali Karzai, A.1    Susskind, M.M.2    Sauer, R.T.3
  • 22
    • 0035900548 scopus 로고    scopus 로고
    • Simultaneous and functional binding of SmpB and EF-Tu·GTP to the alanyl acceptor arm of tmRNA
    • DOI 10.1006/jmbi.2001.5114
    • Barends S., Karzai A. W., Sauer R. T., Wower J., Kraal B., Simultaneous and functional binding of SmpB and EF-Tu · GTP to the alanyl acceptor arm of tmRNA. Journal of Molecular Biology 2001 314 1 9 21 2-s2.0-0035900548 10.1006/jmbi.2001.5114 (Pubitemid 33097287)
    • (2001) Journal of Molecular Biology , vol.314 , Issue.1 , pp. 9-21
    • Barends, S.1    Karzai, A.W.2    Sauer, R.T.3    Wower, J.4    Kraal, B.5
  • 24
    • 0034423519 scopus 로고    scopus 로고
    • Binding and cross-linking of tmRNA to ribosomal protein S1, on and off the Escherichia coli ribosome
    • 2-s2.0-0034423519
    • Wower I. K., Zwieb C. W., Guven S. A., Wower J., Binding and cross-linking of tmRNA to ribosomal protein S1, on and off the Escherichia coli ribosome. EMBO Journal 2000 19 23 6612 6621 2-s2.0-0034423519
    • (2000) EMBO Journal , vol.19 , Issue.23 , pp. 6612-6621
    • Wower, I.K.1    Zwieb, C.W.2    Guven, S.A.3    Wower, J.4
  • 25
    • 33947718697 scopus 로고    scopus 로고
    • In vitro trans-translation of Thermus thermophilus: Ribosomal protein S1 is not required for the early stage of trans-translation
    • DOI 10.1261/rna.363207
    • Takada K., Takemoto C., Kawazoe M., Konno T., Hanawa-Suetsugu K., Lee S., Shirouzu M., Yokoyama S., Muto A., Himeno H., In vitro trans -translation of Thermus thermophilus: ribosomal protein S1 is not required for the early stage of trans -translation. RNA 2007 13 4 503 510 2-s2.0-33947718697 10.1261/rna.363207 (Pubitemid 46506933)
    • (2007) RNA , vol.13 , Issue.4 , pp. 503-510
    • Takada, K.1    Takemoto, C.2    Kawazoe, M.3    Konno, T.4    Hanawa-Suetsugu, K.5    Lee, S.6    Shirouzu, M.7    Yokoyama, S.8    Muto, A.9    Himeno, H.10
  • 26
    • 34047097775 scopus 로고    scopus 로고
    • Ribosomal Protein S1 Is not Essential for the trans-translation Machinery
    • DOI 10.1016/j.jmb.2007.02.068, PII S0022283607002604
    • Qi H., Shimizu Y., Ueda T., Ribosomal Protein S1 Is not Essential for the trans -translation Machinery. Journal of Molecular Biology 2007 368 3 845 852 2-s2.0-34047097775 10.1016/j.jmb.2007.02.068 (Pubitemid 46527628)
    • (2007) Journal of Molecular Biology , vol.368 , Issue.3 , pp. 845-852
    • Qi, H.1    Shimizu, Y.2    Ueda, T.3
  • 27
    • 34249859134 scopus 로고    scopus 로고
    • Ribosomal protein S1 influences trans-translation in vitro and in vivo
    • DOI 10.1093/nar/gkm100
    • Saguy M., Gillet R., Skorski P., Hermann-Le Denmat S., Felden B., Ribosomal protein S1 influences trans -translation in vitro and in vivo. Nucleic Acids Research 2007 35 7 2368 2376 2-s2.0-34249859134 10.1093/nar/gkm100 (Pubitemid 47073719)
    • (2007) Nucleic Acids Research , vol.35 , Issue.7 , pp. 2368-2376
    • Saguy, M.1    Gillet, R.2    Skorski, P.3    Hermann-Le Denmat, S.4    Felden, B.5
  • 28
    • 0037118708 scopus 로고    scopus 로고
    • SmpB: A protein that binds to double-stranded segments in tmRNA and tRNA
    • DOI 10.1021/bi0201365
    • Wower J., Zwieb C. W., Hoffman D. W., Wower I. K., SmpB: a protein that binds to double-stranded segments in tmRNA and tRNA. Biochemistry 2002 41 28 8826 8836 2-s2.0-0037118708 10.1021/bi0201365 (Pubitemid 34774396)
    • (2002) Biochemistry , vol.41 , Issue.28 , pp. 8826-8836
    • Wower, J.1    Zwieb, C.W.2    Hoffman, D.W.3    Wower, I.K.4
  • 29
    • 0041737720 scopus 로고    scopus 로고
    • Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB
    • DOI 10.1038/nature01831
    • Gutmann S., Haebel P. W., Metzinger L., Sutter M., Felden B., Ban N., Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB. Nature 2003 424 6949 699 703 2-s2.0-0041737720 10.1038/nature01831 (Pubitemid 36987997)
    • (2003) Nature , vol.424 , Issue.6949 , pp. 699-703
    • Gutmann, S.1    Haebel, P.W.2    Metzinger, L.3    Sutter, M.4    Felden, B.5    Ban, N.6
  • 31
    • 0037029092 scopus 로고    scopus 로고
    • The role of SmpB protein in trans-translation
    • DOI 10.1016/S0014-5793(02)02333-5, PII S0014579302023335
    • Shimizu Y., Ueda T., The role of SmpB protein in trans -translation. FEBS Letters 2002 514 1 74 77 2-s2.0-0037029092 10.1016/S0014-5793(02)02333-5 (Pubitemid 34251246)
    • (2002) FEBS Letters , vol.514 , Issue.1 , pp. 74-77
    • Shimizu, Y.1    Ueda, T.2
  • 32
    • 0037007224 scopus 로고    scopus 로고
    • Structure of small protein B: The protein component of the tmRNA-SmpB system for ribosome rescue
    • DOI 10.1093/emboj/21.7.1845
    • Dong G., Nowakowski J., Hoffman D. W., Structure of small protein B: the protein component of the tmRNA-SmpB system for ribosome rescue. EMBO Journal 2002 21 7 1845 1854 2-s2.0-0037007224 10.1093/emboj/21.7.1845 (Pubitemid 34614640)
    • (2002) EMBO Journal , vol.21 , Issue.7 , pp. 1845-1854
    • Dong, G.1    Nowakowski, J.2    Hoffman, D.W.3
  • 34
    • 1842526451 scopus 로고    scopus 로고
    • Ribosome rescue by tmRNA requires truncated mRNAs
    • DOI 10.1016/j.jmb.2004.02.043, PII S002228360400227X
    • Ivanova N., Pavlov M. Y., Felden B., Ehrenberg M., Ribosome rescue by tmRNA requires truncated mRNAs. Journal of Molecular Biology 2004 338 1 33 41 2-s2.0-1842526451 10.1016/j.jmb.2004.02.043 (Pubitemid 38429784)
    • (2004) Journal of Molecular Biology , vol.338 , Issue.1 , pp. 33-41
    • Ivanova, N.1    Pavlov, M.Y.2    Felden, B.3    Ehrenberg, M.4
  • 35
    • 26944432029 scopus 로고    scopus 로고
    • Competition between trans-translation and termination or elongation of translation
    • DOI 10.1093/nar/gki871
    • Asano K., Kurita D., Takada K., Konno T., Muto A., Himeno H., Competition between trans -translation and termination or elongation of translation. Nucleic Acids Research 2005 33 17 5544 5552 2-s2.0-26944432029 10.1093/nar/gki871 (Pubitemid 41548820)
    • (2005) Nucleic Acids Research , vol.33 , Issue.17 , pp. 5544-5552
    • Asano, K.1    Kurita, D.2    Takada, K.3    Konno, T.4    Muto, A.5    Himeno, H.6
  • 36
    • 21344471643 scopus 로고    scopus 로고
    • Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA
    • DOI 10.1093/nar/gki666
    • Ivanova N., Pavlov M. Y., Bouakaz E., Ehrenberg M., Schiavone L. H., Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA. Nucleic Acids Research 2005 33 11 3529 3539 2-s2.0-21344471643 10.1093/nar/gki666 (Pubitemid 41430576)
    • (2005) Nucleic Acids Research , vol.33 , Issue.11 , pp. 3529-3539
    • Ivanova, N.1    Pavlov, M.Y.2    Bouakaz, E.3    Ehrenberg, M.4    Schiavone, L.H.5
  • 37
    • 2942755867 scopus 로고    scopus 로고
    • Pre-binding of small protein B to a stalled ribosome triggers trans-translation
    • DOI 10.1074/jbc.M314086200
    • Hallier M., Ivanova N., Rametti A., Pavlov M., Ehrenberg M., Felden B., Pre-binding of small protein B to a stalled ribosome triggers trans -translation. Journal of Biological Chemistry 2004 279 25 25978 25985 2-s2.0-2942755867 10.1074/jbc.M314086200 (Pubitemid 38798739)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.25 , pp. 25978-25985
    • Hallier, M.1    Ivanova, N.2    Rametti, A.3    Pavlov, M.4    Ehrenberg, M.5    Felden, B.6
  • 38
    • 33645802168 scopus 로고    scopus 로고
    • Small protein B interacts with the large and the small subunits of a stalled ribosome during trans -translation
    • 2-s2.0-33645802168 10.1093/nar/gkl097
    • Hallier M., Desreac J., Felden B., Small protein B interacts with the large and the small subunits of a stalled ribosome during trans -translation. Nucleic Acids Research 2006 34 6 1935 1943 2-s2.0-33645802168 10.1093/nar/gkl097
    • (2006) Nucleic Acids Research , vol.34 , Issue.6 , pp. 1935-1943
    • Hallier, M.1    Desreac, J.2    Felden, B.3
  • 41
    • 75149143993 scopus 로고    scopus 로고
    • Accommodation of tmRNA-SmpB into stalled ribosomes: A cryo-EM study
    • 2-s2.0-75149143993 10.1261/rna.1757410
    • Weis F., Bron P., Rolland J. P., Thomas D., Felden B., Gillet R., Accommodation of tmRNA-SmpB into stalled ribosomes: a cryo-EM study. RNA 2010 16 2 299 306 2-s2.0-75149143993 10.1261/rna.1757410
    • (2010) RNA , vol.16 , Issue.2 , pp. 299-306
    • Weis, F.1    Bron, P.2    Rolland, J.P.3    Thomas, D.4    Felden, B.5    Gillet, R.6
  • 42
    • 14044265657 scopus 로고    scopus 로고
    • Function of the SmpB tail in transfer-messenger RNA translation revealed by a nucleus-encoded form
    • DOI 10.1074/jbc.M409277200
    • Jacob Y., Sharkady S. M., Bhardwaj K., Sanda A., Williams K. P., Function of the SmpB tail in transfer-messenger RNA translation revealed by a nucleus-encoded form. Journal of Biological Chemistry 2005 280 7 5503 5509 2-s2.0-14044265657 10.1074/jbc.M409277200 (Pubitemid 40280027)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.7 , pp. 5503-5509
    • Jacob, Y.1    Sharkady, S.M.2    Bhardwaj, K.3    Sanda, A.4    Williams, K.P.5
  • 43
    • 14044271596 scopus 로고    scopus 로고
    • A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation
    • DOI 10.1073/pnas.0409694102
    • Sundermeier T. R., Dulebohn D. P., Cho H. J., Karzai A. W., A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans -translation. Proceedings of the National Academy of Sciences of the United States of America 2005 102 7 2316 2321 2-s2.0-14044271596 10.1073/pnas.0409694102 (Pubitemid 40279373)
    • (2005) Proceedings of the National Academy of Sciences of the United States of America , vol.102 , Issue.7 , pp. 2316-2321
    • Sundermeier, T.R.1    Dulebohn, D.P.2    Cho, H.J.3    Karzai, A.W.4
  • 44
    • 0032498266 scopus 로고    scopus 로고
    • Mapping the position of translational elongation factor EF-G in the ribosome by directed hydroxyl radical probing
    • DOI 10.1016/S0092-8674(00)80905-8
    • Wilson K. S., Noller H. F., Mapping the position of translational elongation factor EF-G in the ribosome by directed hydroxyl radical probing. Cell 1998 92 1 131 139 2-s2.0-0032498266 10.1016/S0092-8674(00)80905-8 (Pubitemid 28053304)
    • (1998) Cell , vol.92 , Issue.1 , pp. 131-139
    • Wilson, K.S.1    Noller, H.F.2
  • 45
    • 0033784538 scopus 로고    scopus 로고
    • Functional sites of interaction between release factor RF1 and the ribosome
    • 10.1038/82818
    • Wilson K. S., Ito K., Noller H. F., Nakamura Y., Functional sites of interaction between release factor RF1 and the ribosome. Nature Structural Biology 2000 7 10 866 870 10.1038/82818
    • (2000) Nature Structural Biology , vol.7 , Issue.10 , pp. 866-870
    • Wilson, K.S.1    Ito, K.2    Noller, H.F.3    Nakamura, Y.4
  • 46
    • 0034759978 scopus 로고    scopus 로고
    • Interaction of translation initiation factor 3 with the 30S ribosomal subunit
    • DOI 10.1016/S1097-2765(01)00356-2
    • Dallas A., Noller H. F., Interaction of translation initiation factor 3 with the 30S ribosomal subunit. Molecular Cell 2001 8 4 855 864 2-s2.0-0034759978 10.1016/S1097-2765(01)00356-2 (Pubitemid 33030218)
    • (2001) Molecular Cell , vol.8 , Issue.4 , pp. 855-864
    • Dallas, A.1    Noller, H.F.2
  • 47
    • 0037020031 scopus 로고    scopus 로고
    • Orientation of ribosome recycling factor in the ribosome from directed hydroxyl radical probing
    • 2-s2.0-0037020031 10.1016/S0092-8674(02)00938-8
    • Lancaster L., Kiel M. C., Kaji A., Noller H. F., Orientation of ribosome recycling factor in the ribosome from directed hydroxyl radical probing. Cell 2002 111 1 129 140 2-s2.0-0037020031 10.1016/S0092-8674(02)00938-8
    • (2002) Cell , vol.111 , Issue.1 , pp. 129-140
    • Lancaster, L.1    Kiel, M.C.2    Kaji, A.3    Noller, H.F.4
  • 48
    • 37549063937 scopus 로고    scopus 로고
    • Interaction of SmpB with ribosome from directed hydroxyl radical probing
    • 2-s2.0-37549063937 10.1093/nar/gkm677
    • Kurita D., Sasaki R., Muto A., Himeno H., Interaction of SmpB with ribosome from directed hydroxyl radical probing. Nucleic Acids Research 2007 35 21 7248 7255 2-s2.0-37549063937 10.1093/nar/gkm677
    • (2007) Nucleic Acids Research , vol.35 , Issue.21 , pp. 7248-7255
    • Kurita, D.1    Sasaki, R.2    Muto, A.3    Himeno, H.4
  • 49
    • 77951184072 scopus 로고    scopus 로고
    • Role of the C-terminal tail of SmpB in the early stage of trans -translation
    • 2-s2.0-77951184072 10.1261/rna.1916610
    • Kurita D., Muto A., Himeno H., Role of the C-terminal tail of SmpB in the early stage of trans -translation. RNA 2010 16 5 980 990 2-s2.0-77951184072 10.1261/rna.1916610
    • (2010) RNA , vol.16 , Issue.5 , pp. 980-990
    • Kurita, D.1    Muto, A.2    Himeno, H.3
  • 50
    • 55849143658 scopus 로고    scopus 로고
    • Insights into translational termination from the structure of RF2 bound to the ribosome
    • 2-s2.0-55849143658 10.1126/science.1164840
    • Weixlbaumer A., Jin H., Neubauer C., Voorhees R. M., Petry S., Kelley A. C., Ramakrishnan V., Insights into translational termination from the structure of RF2 bound to the ribosome. Science 2008 322 5903 953 956 2-s2.0-55849143658 10.1126/science.1164840
    • (2008) Science , vol.322 , Issue.5903 , pp. 953-956
    • Weixlbaumer, A.1    Jin, H.2    Neubauer, C.3    Voorhees, R.M.4    Petry, S.5    Kelley, A.C.6    Ramakrishnan, V.7
  • 52
    • 33751103912 scopus 로고    scopus 로고
    • Structural basis for messenger RNA movement on the ribosome
    • DOI 10.1038/nature05281, PII NATURE05281
    • Yusupova G., Jenner L., Rees B., Moras D., Yusupov M., Structural basis for messenger RNA movement on the ribosome. Nature 2006 444 7117 391 394 2-s2.0-33751103912 10.1038/nature05281 (Pubitemid 44764117)
    • (2006) Nature , vol.444 , Issue.7117 , pp. 391-394
    • Yusupova, G.1    Jenner, L.2    Rees, B.3    Moras, D.4    Yusupov, M.5
  • 53
    • 0035805229 scopus 로고    scopus 로고
    • Recognition of cognate transfer RNA by the 30S ribosomal subunit
    • DOI 10.1126/science.1060612
    • Ogle J. M., Brodersen D. E., Clemons W. M. Jr., Tarry M. J., Carter A. P., Ramakrishnan V., Recognition of cognate transfer RNA by the 30S ribosomal subunit. Science 2001 292 5518 897 902 2-s2.0-0035805229 10.1126/science.1060612 (Pubitemid 32422480)
    • (2001) Science , vol.292 , Issue.5518 , pp. 897-902
    • Ogle, J.M.1    Brodersen, D.E.2    Clemons W.M., Jr.3    Tarry, M.J.4    Carter, A.P.5    Ramakrishnan, V.6
  • 54
    • 59649110308 scopus 로고    scopus 로고
    • Ribosome hijacking: A role for small protein B during trans -translation
    • 2-s2.0-59649110308 10.1038/embor.2008.243
    • Nonin-Lecomte S., Germain-Amiot N., Gillet R., Hallier M., Ponchon L., Dardel F., Felden B., Ribosome hijacking: a role for small protein B during trans -translation. EMBO Reports 2009 10 2 160 165 2-s2.0-59649110308 10.1038/embor.2008.243
    • (2009) EMBO Reports , vol.10 , Issue.2 , pp. 160-165
    • Nonin-Lecomte, S.1    Germain-Amiot, N.2    Gillet, R.3    Hallier, M.4    Ponchon, L.5    Dardel, F.6    Felden, B.7
  • 55
    • 57549112237 scopus 로고    scopus 로고
    • Structural dynamics of the ribosome
    • 2-s2.0-57549112237 10.1016/j.cbpa.2008.08.037
    • Korostelev A., Ermolenko D. N., Noller H. F., Structural dynamics of the ribosome. Current Opinion in Chemical Biology 2008 12 6 674 683 2-s2.0-57549112237 10.1016/j.cbpa.2008.08.037
    • (2008) Current Opinion in Chemical Biology , vol.12 , Issue.6 , pp. 674-683
    • Korostelev, A.1    Ermolenko, D.N.2    Noller, H.F.3
  • 56
    • 71149087505 scopus 로고    scopus 로고
    • The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE
    • 2-s2.0-71149087505 10.1016/j.cell.2009.11.015
    • Neubauer C., Gao Y. G., Andersen K. R., Dunham C. M., Kelley A. C., Hentschel J., Gerdes K., Ramakrishnan V., Brodersen D. E., The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE. Cell 2009 139 6 1084 1095 2-s2.0-71149087505 10.1016/j.cell.2009.11.015
    • (2009) Cell , vol.139 , Issue.6 , pp. 1084-1095
    • Neubauer, C.1    Gao, Y.G.2    Andersen, K.R.3    Dunham, C.M.4    Kelley, A.C.5    Hentschel, J.6    Gerdes, K.7    Ramakrishnan, V.8    Brodersen, D.E.9
  • 57
    • 26944431987 scopus 로고    scopus 로고
    • Ribosome rescue: tmRNA tagging activity and capacity in Escherichia coli
    • DOI 10.1111/j.1365-2958.2005.04832.x
    • Moore S. D., Sauer R. T., Ribosome rescue: tmRNA tagging activity and capacity in Escherichia coli. Molecular Microbiology 2005 58 2 456 466 2-s2.0-26944431987 10.1111/j.1365-2958.2005.04832.x (Pubitemid 41476161)
    • (2005) Molecular Microbiology , vol.58 , Issue.2 , pp. 456-466
    • Moore, S.D.1    Sauer, R.T.2
  • 58
    • 36849093840 scopus 로고    scopus 로고
    • Functional SmpB-ribosome interactions require tmRNA
    • DOI 10.1074/jbc.M707256200
    • Sundermeier T. R., Karzai A. W., Functional SmpB-ribosome interactions require tmRNA. Journal of Biological Chemistry 2007 282 48 34779 34786 2-s2.0-36849093840 10.1074/jbc.M707256200 (Pubitemid 350232419)
    • (2007) Journal of Biological Chemistry , vol.282 , Issue.48 , pp. 34779-34786
    • Sundermeier, T.R.1    Karzai, A.W.2
  • 60
    • 0037428226 scopus 로고    scopus 로고
    • The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site
    • DOI 10.1016/S0092-8674(02)01248-5
    • Pedersen K., Zavialov A. V., Pavlov M. YU., Elf J., Gerdes K., Ehrenberg M., The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site. Cell 2003 112 1 131 140 2-s2.0-0037428226 10.1016/S0092- 8674(02)01248-5 (Pubitemid 36106425)
    • (2003) Cell , vol.112 , Issue.1 , pp. 131-140
    • Pedersen, K.1    Zavialov, A.V.2    Pavlov, M.Yu.3    Elf, J.4    Gerdes, K.5    Ehrenberg, M.6
  • 61
    • 78349287024 scopus 로고    scopus 로고
    • Novel factor rescues ribosomes trapped on non-stop mRNAs
    • 10.1111/j.1365-2958.2010.07379.x
    • Himeno H., himeno@cc.hirosaki-u.ac.jp Novel factor rescues ribosomes trapped on non-stop mRNAs. Molecular Microbiology 2010 78 4 789 791 10.1111/j.1365-2958.2010.07379.x
    • (2010) Molecular Microbiology , vol.78 , Issue.4 , pp. 789-791
    • Himeno, H.1
  • 62
    • 78349300881 scopus 로고    scopus 로고
    • Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans -translation system
    • 10.1111/j.1365-2958.2010.07375.x
    • Chadani Y., Ono K., Ozawa S. -I., Takahashi Y., Takai K., Nanamiya H., Tozawa Y., Kutsukake K., Abo T., tabo@cc.okayama-u.ac.jp Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans -translation system. Molecular Microbiology 2010 78 4 796 808 10.1111/j.1365-2958.2010.07375.x
    • (2010) Molecular Microbiology , vol.78 , Issue.4 , pp. 796-808
    • Chadani, Y.1    Ono, K.2    Ozawa, S.-I.3    Takahashi, Y.4    Takai, K.5    Nanamiya, H.6    Tozawa, Y.7    Kutsukake, K.8    Abo, T.9
  • 64
    • 0034951396 scopus 로고    scopus 로고
    • Determinants on tmRNA for initiating efficient and precise trans-translation: Some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans-translation in vitro
    • DOI 10.1017/S1355838201010342
    • Lee S., Ishii M., Tadaki T., Muto A., Himeno H., Determinants on tmRNA for initiating efficient and precise trans -translation: some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans -translation in vitro. RNA 2001 7 7 999 1012 2-s2.0-0034951396 10.1017/S1355838201010342 (Pubitemid 32612477)
    • (2001) RNA , vol.7 , Issue.7 , pp. 999-1012
    • Lee, S.1    Ishii, M.2    Tadaki, T.3    Muto, A.4    Himeno, H.5
  • 65
    • 0033215307 scopus 로고    scopus 로고
    • Resuming translation on tmRNA: A unique mode of determining a reading frame
    • DOI 10.1093/emboj/18.19.5423
    • Williams K. P., Martindale K. A., Bartel D. P., Resuming translation on tmRNA: a unique mode of determining a reading frame. EMBO Journal 1999 18 19 5423 5433 2-s2.0-0033215307 10.1093/emboj/18.19.5423 (Pubitemid 29465591)
    • (1999) EMBO Journal , vol.18 , Issue.19 , pp. 5423-5433
    • Williams, K.P.1    Martindale, K.A.2    Bartel, D.P.3
  • 66
    • 34748881977 scopus 로고    scopus 로고
    • A functional interaction of SmpB with tmRNA for determination of the resuming point of trans-translation
    • DOI 10.1261/rna.604907
    • Konno T., Kurita D., Takada K., Muto A., Himeno H., A functional interaction of SmpB with tmRNA for determination of the resuming point of trans -translation. RNA 2007 13 10 1723 1731 2-s2.0-34748881977 10.1261/rna.604907 (Pubitemid 47481680)
    • (2007) RNA , vol.13 , Issue.10 , pp. 1723-1731
    • Konno, T.1    Kurita, D.2    Takada, K.3    Muto, A.4    Himeno, H.5
  • 67
    • 67650656654 scopus 로고    scopus 로고
    • SmpB contributes to reading frame selection in the translation of transfer-messenger RNA
    • 2-s2.0-67650656654 10.1016/j.jmb.2009.06.037
    • Watts T., Cazier D., Healey D., Buskirk A., SmpB contributes to reading frame selection in the translation of transfer-messenger RNA. Journal of Molecular Biology 2009 391 2 275 281 2-s2.0-67650656654 10.1016/j.jmb.2009.06. 037
    • (2009) Journal of Molecular Biology , vol.391 , Issue.2 , pp. 275-281
    • Watts, T.1    Cazier, D.2    Healey, D.3    Buskirk, A.4
  • 68
    • 78449274864 scopus 로고    scopus 로고
    • Visualizing the transfer-messenger RNA as the ribosome resumes translation
    • 10.1038/emboj.2010.255
    • Fu J., jf2192@columbia.edu Hashem Y., Wower I., Lei J., Liao H. Y., Zwieb C., Wower J., Frank J., Visualizing the transfer-messenger RNA as the ribosome resumes translation. EMBO Journal 2010 29 22 3819 3825 10.1038/emboj.2010.255
    • (2010) EMBO Journal , vol.29 , Issue.22 , pp. 3819-3825
    • Fu, J.1    Hashem, Y.2    Wower, I.3    Lei, J.4    Liao, H.Y.5    Zwieb, C.6    Wower, J.7    Frank, J.8
  • 69
    • 78449290339 scopus 로고    scopus 로고
    • TmRNA-SmpB: A journey to the centre of the bacterial ribosome
    • 10.1038/emboj.2010.252
    • Weis F., Bron P., Giudice E., Rolland J. -P., Thomas D., Felden B., bfelden@univ-rennes1.fr Gillet R., reynald.gillet@univ-rennes1.fr TmRNA-SmpB: a journey to the centre of the bacterial ribosome. EMBO Journal 2010 29 22 3810 3818 10.1038/emboj.2010.252
    • (2010) EMBO Journal , vol.29 , Issue.22 , pp. 3810-3818
    • Weis, F.1    Bron, P.2    Giudice, E.3    Rolland, J.-P.4    Thomas, D.5    Felden, B.6
  • 70
    • 0042847384 scopus 로고    scopus 로고
    • Various effects of paromomycin on tmRNA-directed trans-translation
    • DOI 10.1074/jbc.M211724200
    • Takahashi T., Konno T., Muto A., Himeno H., Various effects of paromomycin on tmRNA-directed trans -translation. Journal of Biological Chemistry 2003 278 30 27672 27680 2-s2.0-0042847384 10.1074/jbc.M211724200 (Pubitemid 36899955)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.30 , pp. 27672-27680
    • Takahashi, T.1    Konno, T.2    Muto, A.3    Himeno, H.4
  • 71
    • 3442899924 scopus 로고    scopus 로고
    • A minimum structure of aminoglycosides that causes an initiation shift of trans-translation
    • DOI 10.1093/nar/gkh750
    • Konno T., Takahashi T., Kurita D., Muto A., Himeno H., A minimum structure of aminoglycosides that causes an initiation shift of trans -translation. Nucleic Acids Research 2004 32 14 4119 4126 2-s2.0-3442899924 10.1093/nar/gkh750 (Pubitemid 39232284)
    • (2004) Nucleic Acids Research , vol.32 , Issue.14 , pp. 4119-4126
    • Konno, T.1    Takahashi, T.2    Kurita, D.3    Muto, A.4    Himeno, H.5
  • 72
    • 0034699519 scopus 로고    scopus 로고
    • Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
    • 2-s2.0-0034699519 10.1038/35030019
    • Carter A. P., Clemons W. M., Brodersen D. E., Morgan-Warren R. J., Wimberly B. T., Ramakrishnan V., Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature 2000 407 6802 340 348 2-s2.0-0034699519 10.1038/35030019
    • (2000) Nature , vol.407 , Issue.6802 , pp. 340-348
    • Carter, A.P.1    Clemons, W.M.2    Brodersen, D.E.3    Morgan-Warren, R.J.4    Wimberly, B.T.5    Ramakrishnan, V.6
  • 74
    • 21744443970 scopus 로고    scopus 로고
    • TmRNA-induced release of messenger RNA from stalled ribosomes
    • DOI 10.1016/j.jmb.2005.05.033, PII S0022283605005760
    • Ivanova N., Pavlov M. Y., Ehrenberg M., tmRNA-induced release of messenger RNA from stalled ribosomes. Journal of Molecular Biology 2005 350 5 897 905 2-s2.0-21744443970 10.1016/j.jmb.2005.05.033 (Pubitemid 40943449)
    • (2005) Journal of Molecular Biology , vol.350 , Issue.5 , pp. 897-905
    • Ivanova, N.1    Pavlov, M.Y.2    Ehrenberg, M.3
  • 75
    • 17844398246 scopus 로고    scopus 로고
    • Transfer-messenger RNA unfolds as it transits the ribosome
    • DOI 10.1261/rna.7269305
    • Wower I. K., Zwieb C., Wower J., Transfer-messenger RNA unfolds as it transits the ribosome. RNA 2005 11 5 668 673 2-s2.0-17844398246 10.1261/rna.7269305 (Pubitemid 40594333)
    • (2005) RNA , vol.11 , Issue.5 , pp. 668-673
    • Wower, I.K.1    Zwieb, C.2    Wower, J.3
  • 77
    • 34247338538 scopus 로고    scopus 로고
    • Structure probing of tmRNA in distinct stages of trans-translation
    • DOI 10.1261/rna.451507
    • Ivanova N., Lindell M., Pavlov M., Schiavone L. H., Wagner E. G. H., Ehrenberg M., Structure probing of tmRNA in distinct stages of trans -translation. RNA 2007 13 5 713 722 2-s2.0-34247338538 10.1261/rna.451507 (Pubitemid 46641530)
    • (2007) RNA , vol.13 , Issue.5 , pp. 713-722
    • Ivanova, N.1    Lindell, M.2    Pavlov, M.3    Schiavone, L.H.4    Wagner, E.G.H.5    Ehrenberg, M.6
  • 80
    • 42149193165 scopus 로고    scopus 로고
    • One SmpB molecule accompanies tmRNA during its passage through the ribosomes
    • 2-s2.0-42149193165 10.1016/j.febslet.2008.03.049
    • Bugaeva E. Y., Shpanchenko O. V., Felden B., Isaksson L. A., Dontsova O. A., One SmpB molecule accompanies tmRNA during its passage through the ribosomes. FEBS Letters 2008 582 10 1532 1536 2-s2.0-42149193165 10.1016/j.febslet.2008.03.049
    • (2008) FEBS Letters , vol.582 , Issue.10 , pp. 1532-1536
    • Bugaeva, E.Y.1    Shpanchenko, O.V.2    Felden, B.3    Isaksson, L.A.4    Dontsova, O.A.5
  • 81
    • 77954650144 scopus 로고    scopus 로고
    • Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy
    • 10.1038/nature09206
    • Fischer N., Konevega A. L., Wintermeyer W., Rodnina M. V., Stark H., hstark1@gwdg.de Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy. Nature 2010 466 7304 329 333 10.1038/nature09206
    • (2010) Nature , vol.466 , Issue.7304 , pp. 329-333
    • Fischer, N.1    Konevega, A.L.2    Wintermeyer, W.3    Rodnina, M.V.4    Stark, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.