Enrichment and sequencing of phosphopeptides on indium tin oxide coated glass slides

Molecular BioSystems

Volumn 7, Issue 6, 2011, Pages 1828-1837

  Kouvonen, Petri ^a   Rainio, Eeva Marja ^a   Suni, Veronika ^a   Koskinen, Päivi ^a   Corthals, Garry L ^a  

^a UNIVERSITY OF TURKU   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

CASEIN; CYCLIC AMP DEPENDENT PROTEIN KINASE; GLASS; INDIUM TIN OXIDE; PHOSPHOPROTEIN; PHOSPHORUS; RECOMBINANT PROTEIN; TIN DERIVATIVE; TRANSCRIPTION FACTOR NFAT;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; BIOSYNTHESIS; CELL STRAIN COS1; CERCOPITHECUS; CHEMISTRY; ISOLATION AND PURIFICATION; LIMIT OF DETECTION; MASS SPECTROMETRY; PHOSPHORYLATION; SEQUENCE ANALYSIS; TANDEM MASS SPECTROMETRY;

AMINO ACID SEQUENCE; ANIMALS; CASEINS; CERCOPITHECUS AETHIOPS; COS CELLS; CYCLIC AMP-DEPENDENT PROTEIN KINASES; GLASS; LIMIT OF DETECTION; NFATC TRANSCRIPTION FACTORS; PHOSPHOPROTEINS; PHOSPHORUS RADIOISOTOPES; PHOSPHORYLATION; RECOMBINANT PROTEINS; SEQUENCE ANALYSIS, PROTEIN; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TANDEM MASS SPECTROMETRY; TIN COMPOUNDS;

EID: 79956087391     PISSN: 1742206X     EISSN: 17422051     Source Type: Journal    
DOI: 10.1039/c0mb00269k     Document Type: Article

References (31)

1. T. Hunter Signaling - 2000 and beyond Cell (Cambridge, Mass.) 2000 100 113 127 (Pubitemid 30046300)
2. M. W. H. Pinkse A. J. R. Heck Essential enrichment strategies in phosphoproteomics Drug Discovery Today: Technol. 2006 3 331 337 (Pubitemid 44734723)
3. A. Paradela J. P. Albar Advances in the Analysis of Protein Phosphorylation J. Proteome Res. 2008 7 1809 1818
4. J. D. Dunn G. E. Reid M. L. Bruening Techniques for phosphopeptide enrichment prior to analysis by mass spectrometry Mass Spectrom. Rev. 2010 29 1 29 54
5. T. E. Thingholm O. N. Jensen M. R. Larsen Analytical strategies for phosphoproteomics Proteomics 2009 9 1451 1468
6. J. V. Olsen B. Blagoev F. Gnad B. Macek C. Kumar P. Mortensen M. Mann Global, in vivo, and site-specific phosphorylation dynamics in signaling networks Cell (Cambridge, Mass.) 2006 127 635 648 (Pubitemid 44647421)
7. J. Villen S. P. Gygi The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry Nat. Protoc. 2008 3 1630 1638
8. S. Y. Imanishi P. Kouvonen J. H. Smatt M. Heikkila E. Peuhu A. Mikhailov M. Ritala M. Linden G. L. Corthals J. E. Eriksson Phosphopeptide enrichment with stable spatial coordination on a titanium dioxide coated glass slide Rapid Commun. Mass Spectrom. 2009 23 3661 3667
9. J. Porath J. A. N. Carlsson I. Olsson G. Belfrage Metal chelate affinity chromatography, a new approach to protein fractionation Nature 1975 258 598 599
10. G. R. Blacken M. Volny T. Vaisar M. Sadilek F. Turecek In situ enrichment of phosphopeptides on MALDI plates functionalized by reactive landing of zirconium(iv)-n-propoxide ions Anal. Chem. 2007 79 5449 5456 (Pubitemid 47121065)
11. G. R. Blacken M. Volný M. Diener K. E. Jackson P. Ranjitkar D. J. Maly F. Turecek Reactive Landing of Gas-Phase Ions as a Tool for the Fabrication of Metal Oxide Surfaces for In situ Phosphopeptide Enrichment J. Am. Soc. Mass Spectrom. 2009 20 915 926
12. H. Zhou S. Xu M. Ye S. Feng C. Pan X. Jiang X. Li G. Han Y. Fu H. Zou Zirconium phosphonate-modified porous silicon for highly specific capture of phosphopeptides and MALDI-TOF MS analysis J. Proteome Res. 2006 5 2431 2437 (Pubitemid 44330837)
13. L. Qiao C. Roussel J. Wan P. Yang H. H. Girault B. Liu Specific on-plate enrichment of phosphorylated peptides for direct MALDI-TOF MS analysis J. Proteome Res. 2007 6 4763 4769
14. T. Hoang U. Roth K. Kowalewski C. Belisle K. Steinert M. Karas Highly Specific Capture and Direct MALDI MS Analysis of Phosphopeptides by Zirconium Phosphonate on Self-Assembled Monolayers Anal. Chem. 2009 82 219 228
15. M.-L. Niklew U. Hochkirch A. Melikyan T. Moritz S. Kurzawski H. Schlüter I. Ebner M. W. Linscheid Phosphopeptide Screening Using Nanocrystalline Titanium Dioxide Films as Affinity Matrix-Assisted Laser Desorption Ionization Targets in Mass Spectrometry Anal. Chem. 2010 82 3 1047 1053
16. F. Torta M. Fusi C. S. Casari C. E. Bottani A. Bachi Titanium Dioxide Coated MALDI Plate for On Target Analysis of Phosphopeptides J. Proteome Res. 2009 8 1932 1942
17. G. L. Corthals, S. Gygi, R. Aebersold and S. P. Patterson, in Proteome research: 2D gel electrophoresis and detection methods, ed., T. Rabilloud,, Springer-Verlag, Heidelberg, 1999, p. 197
18. M. R. Larsen T. E. Thingholm O. N. Jensen P. Roepstorff T. J. Jorgensen Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns Mol. Cell. Proteomics 2005 4 873
19. S. S. Jensen M. R. Larsen Evaluation of the impact of some experimental procedures on different phosphopeptide enrichment techniques Rapid Commun. Mass Spectrom. 2007 21 3635 3645 (Pubitemid 350124632)
20. M. Schuerenberg C. Luebbert H. Eickhoff M. Kalkum H. Lehrach E. Nordhoff Prestructured MALDI-MS Sample Supports Anal. Chem. 2000 72 3436 3442 (Pubitemid 30614913)
21. L. A. McDonnell R. M. A. Heeren Imaging mass spectrometry Mass Spectrom. Rev. 2007 26 606 643 (Pubitemid 47169781)
22. P. Chaurand S. A. Schwartz D. Billheimer B. J. Xu A. Crecelius R. M. Caprioli Integrating Histology and Imaging Mass Spectrometry Anal. Chem. 2004 76 1145 1155 (Pubitemid 38235565)
23. C. R. Beals C. M. Sheridan C. W. Turck P. Gardner G. R. Crabtree Nuclear Export of NF-ATc Enhanced by Glycogen Synthase Kinase-3 Science 1997 275 1930 1933 (Pubitemid 27148814)
24. C. M. Sheridan E. K. Heist C. R. Beals G. R. Crabtree P. Gardner Protein Kinase A Negatively Modulates the Nuclear Accumulation of NF-ATc1 by Priming for Subsequent Phosphorylation by Glycogen Synthase Kinase-3 J. Biol. Chem. 2002 277 48664 48676 (Pubitemid 35470830)
25. J. Nak Cheon L. Ji Sun T. Eunju Lee L. Young Ju Y. Kyung Byung Acidity Scale for Metal Oxides and Sanderson's Electronegativities of Lanthanide Elements Angew. Chem., Int. Ed. 2008 120 10282 10286
26. J. B. Shabb Physiological Substrates of cAMP-Dependent Protein Kinase Chem. Rev. 2001 101 2381 2412
27. C. Peng A. Knebel N. A. Morrice X. Li K. Barringer J. Li S. Jakes B. Werneburg L. Wang Pim Kinase Substrate Identification and Specificity J. Biochem. 2007 141 353 362 (Pubitemid 46770388)
28. H. Okamura J. Aramburu C. García-Rodríguez J. P. B. Viola A. Raghavan M. Tahiliani X. Zhang J. Qin P. G. Hogan A. Rao Concerted Dephosphorylation of the Transcription Factor NFAT1 Induces a Conformational Switch that Regulates Transcriptional Activity Mol. Cell 2000 6 539 550
29. E. M. Rainio J. Sandholm P. J. Koskinen Cutting edge: transcriptional activity of NFATc1 is enhanced by the Pim-1 kinase J. Immunol. 2002 168 1524 1527 (Pubitemid 34135742)
30. S. Y. Imanishi V. Kochin S. E. Ferraris A. de Thonel H. M. Pallari G. L. Corthals J. E. Eriksson Reference-facilitated phosphoproteomics: fast and reliable phosphopeptide validation by microLC-ESI-Q-TOF MS/MS Mol. Cell. Proteomics 2007 6 1380
31. M. Mann M. Wilm Error-tolerant identification of peptides in sequence databases by peptide sequence tags Anal. Chem. 1994 66 4390 4399 (Pubitemid 124006101)