Simulating C cycles in forest soils: Including the active role of micro-organisms in the ANAFORE forest model

Ecological Modelling

Volumn 222, Issue 12, 2011, Pages 1972-1985

  Deckmyn, G ^a   Campioli, M ^a   Muys, B ^b   Kraigher, H ^c  

^a UNIVERSITY OF ANTWERP   (Belgium)

^b UNIVERSITY OF LEUVEN   (Belgium)

^c SLOVENIAN FORESTRY INSTITUTE   (Slovenia)

Author keywords

Forest; Mechanistic model; Micro organisms; Mycorrhizae; Soil processes

Indexed keywords

BAYESIAN PROCEDURES; BELGIUM; BIOLOGICAL PROCESS; FOREST; FOREST ECOSYSTEM; FOREST MODELS; FOREST SITES; FOREST SOILS; INPUT PARAMETER; MECHANISTIC MODEL; MODEL DESCRIPTION; MYCORRHIZAE; PARAMETER SET; PEDUNCULATE OAK; PHYSIOLOGICAL PRINCIPLES; SCOTS PINE; SINGLE PARAMETER; SOIL MODEL; SOIL ORGANISMS; SOIL PROCESSES; WOOD TISSUES;

BIOLOGY; C (PROGRAMMING LANGUAGE); COMPUTER SIMULATION; ECOSYSTEMS; FORESTRY; MICROORGANISMS; PHYSIOLOGICAL MODELS; SOILS; TISSUE;

GEOLOGIC MODELS;

BACTERIUM; BAYESIAN ANALYSIS; CARBON CYCLE; CONIFEROUS TREE; DECIDUOUS TREE; DEVELOPMENTAL BIOLOGY; EXPERIMENTAL STUDY; FOREST ECOSYSTEM; FUNGUS; MYCORRHIZA; NUMERICAL MODEL; PH; SOIL MICROORGANISM; SOIL ORGANIC MATTER; UNCERTAINTY ANALYSIS;

ECOSYSTEMS; FORESTRY; FORESTS; MATHEMATICAL MODELS; MICROORGANISMS; PROGRAMING LANGUAGES; SIMULATION; SOIL; TISSUE;

BELGIUM;

BACTERIA (MICROORGANISMS); FAGUS; FUNGI; PINUS SYLVESTRIS;

EID: 79955979222     PISSN: 03043800     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecolmodel.2011.03.011     Document Type: Article

References (35)

1. Berg B., Meentemeyer V. Litter quality in a north European transect versus carbon storage potential. Plant and Soil 2002, 242:83-92.
2. Bossel H. TREEDYN3 forest simulation model. Ecological Modellling 1996, 90:187-227.
3. Campbell G.S., Norman J.M. An Introduction to Environmental Biophysics 1998, Springer-Verlag, New York, p. 286.
4. Coppens F., Mercxs R., Recous S. Impact of crop residue location on carbon and nitrogen distribution in soil and water-stable aggregates. European Journal of Soil Science 2006, 57:570-582.
5. Deckmyn G., Verbeeck H., Op de Beeck M., Vansteenkiste D., Steppe K., Ceulemans R. ANAFORE: a stand-scale process-based forest model that includes wood tissue development and labile carbon storage in trees. Ecological Modelling 2008, 215:345-368.
6. Deckmyn G., Mali B., Kraigher H., Torelli N., Op de Beeck M., Ceulemans R. Using the process-based stand model ANAFORE including Bayesian optimization to predict wood quality and quantity and their uncertainty in Slovenian beech. Silva Fennica 2009, 43:523-534.
7. DeVries D.A. Thermal properties of soil. Physics of Plant environment 1963, 210-235. North Holland Pub. Co., Amsterdam. W.R. Van Wick (Ed.).
8. Garnier P., Néel C., Mary B., Lafolie F. Evaluation of a nitrogen transport and transformation model in a bare soil. European Journal of Soil Science 2001, 52:253-268.
9. Garnier P., Néel C., Aita C., Recous S., Lafolie F., Mary B. Modeling carbon and nitrogen dynamics in a bare soil with and without straw incorporation. European Journal of Soil Science 2003, 54:555-568.
10. Graves J.D., Watkins N.K., Fitter A.H., Robinson D., Scrimgeour C. Intraspecific transfer of carbon between plants linked by a common mycorrhizal network. Plant and Soil 1997, 192:153-159.
11. Gregson K., Hector D.J., McGowan M. A one-parameter model for the soil water characteristics. Journal of Soil Science 1987, 38:483-486.
12. Hoosbeek M.R., Scarasia-Mugnozza G.E. Increased litter build up and soil organic matter stabilization in a poplar plantation after 6 years of atmospheric CO2 enrichment (FACE): final results of POP-EuroFACE compared to other forest FACE experiments. Ecosystems 2009, 12:220-239.
13. Jones H.G. Plants and Microclimate 1992, Cambridge University Press, p. 428.
14. Kelliher F.M., Ross D.J., Law B.E., Baldocchi D.D., Rodda N.J. Limitations to carbon mineralization in litter and mineral soil of young and old ponderosa pine forests. Forest Ecology and Management 2004, 191:201-213.
15. Lhomme J.P. Formulation of root-water uptake in a multiplayer soil-plant model: does Van den Honert's equation hold. Hydrology of the Earth System Science 1998, 2:31-40.
16. Lindahl B.O., Taylor A.F.S., Finlay R.D. Defining nutritional constraints on carbon cycling in boreal forests-towards a less phytocentric perspective. Plant and Soil 2002, 242:123-135.
17. Liski J., Palosuo T., Peltoniemi M., Sievänen R. Carbon and decomposition model Yasso for forest soils. Ecological Modelling 2005, 189:168-182.
18. Monteith J.L. Evaporation and environment. The State and Movement of Water in Living Organisms. 19th Symposium for Experimental Science 1965, 205-234. Cambridge University Press, London. G.F. Fogg (Ed.).
19. Montes F., Canellas I. Modeling coarse woody debris dynamics in even-aged Scots pine forests. Forest Ecology and Management 2006, 221:220-232.
20. Muys, B., 1993. Synecologische evaluatie van regenwormactiviteit en strooiselafbraak in de bossen van het vlaamse gewest als bijdrage tot een duurzaam bosbeheer. PhD Thesis, Universiteit Gent.
21. Muys B., Lust N. Inventory of the earthworm communities and the state of litter decomposition in the forests of Flanders (Belgium) and its implications for forest management. Soil Biology and Biochemistry 1992, 24:1677-1681.
22. Muys B. The influence of tree species on humus quality and nutrient availability on a regional scale (Flanders, Belgium). Nutrient Uptake and Cycling in Forest Ecosystems 1995, 649-660. Kluwer Academic Publishers. L.O. Nilsson, R.F. Hüttl, U.T. Johansson (Eds.).
23. Newman E.I. Resistance to water flow in soil and plant. I. Soil resistance in relation to amounts of root: theoretical estimate. Journal of Applied Ecology 1969, 6:1-12.
24. Parton W.J., Schimel D.S., Cole C.V., Ojima D.S. Analysis of factors controlling soil organic levels of grasslands in the Great Plains. Soil Science Society of America Journal 1987, 51:1173-1179.
25. Penman H.L. Natural evaporation from open water, bare soil and grass. Proceedings of the Royal Society A 1948, 193:120-145.
26. Rawls W.J., Ahuja L.R., Brakensiek D.L. Estimating soil hydraulic properties from soil data. Indirect Methods for Estimating Properties of Unsaturated Soils 1992, UC Riverside Press, CA. M. Van Genuchten, F.L. Leij, L.J. Lunds (Eds.).
27. Read D.J., Perez-Moreno J. Mycorrhizae and nutrient cycling in ecosystems-a journey towards relevance?. New Phytologist 2003, 157:475-492.
28. Rodrigo A., Recouns S., Neel C., Mary B. Modeling temperature and moisture effects on C-N transformations in soils: comparison of nine models. Ecological Modelling 1997, 102:325-339.
29. Rühlmann J. A new approach to estimating the pool of stable organic matter in soil using data from long-term field experiments. Plant and Soil 1999, 213:149-160.
30. Six J., Elliott E.T., Paustian K. Soil maccroaggregate turnover and microaggregate formation: a mechanism for C-sequestration under no-tillage agriculture. Soil Biology and Biochemistry 2000, 32:2099-2103.
31. Sung K., Kim J., Munster C.L., Corapcioglu M.Y., Park S., Drew M.C., Chang Y.Y. A simple approach to modelling microbial biomass in the rhizosphere. Ecological Modelling 2006, 190:277-286.
32. Thornley J.H.M. Grassland Dynamics, An Ecosystem Simulation Model 1998, CAB International, Cambridge, p. 241.
33. Van Oijen M., Rougier J., Smith R. Bayesian calibration of process-based forest models: bridging the gap between models and data. Tree Physiology 2005, 25:915-927.
34. Verbeeck H., Steppe K., Nadezhna N., Op De Beeck M., Deckmyn G., Meiresonne L., Lemeur R., Čermak J., Ceulemans R., Janssens I. Atmospheric drivers of storage water use in Scots pine. Biogeosciences 2007, 4:657-671.
35. Yi Z., Fu S., Zhou G., Mo J., Zhang D., Ding M., Wang X., Zhou L. Partitioning soil respiration of subtropical forests with different succesional stages in south China. Forest Ecology and Management 2007, 243:178-186.