메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

A formal MIM specification and tools for the common exchange of MIM diagrams: An XML-Based format, an API, and a validation method

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL INFORMATION; CELLULAR SIGNALING NETWORKS; JAVA-BASED APPLICATIONS; MACHINE-READABLE FORMAT; SOFTWARE DEVELOPER; SOFTWARE PROJECT; SOFTWARE REQUIREMENTS; SOURCE CODES;

EID: 79955968330     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-167     Document Type: Article
Times cited : (18)

References (32)
  • 1
    • 0032776303 scopus 로고    scopus 로고
    • Molecular interaction map of the mammalian cell cycle control and DNA repair systems
    • 25504, 10436023
    • Kohn KW. Molecular interaction map of the mammalian cell cycle control and DNA repair systems. Molecular biology of the cell 1999, 10:2703-2734. 25504, 10436023.
    • (1999) Molecular biology of the cell , vol.10 , pp. 2703-2734
    • Kohn, K.W.1
  • 2
    • 77649208016 scopus 로고    scopus 로고
    • Predicted functions of MdmX in fine-tuning the response of p53 to DNA damage
    • 10.1371/journal.pcbi.1000665, 2824598, 20174603
    • Kim S, Aladjem MI, McFadden GB, Kohn KW. Predicted functions of MdmX in fine-tuning the response of p53 to DNA damage. PLoS computational biology 2010, 6:e1000665. 10.1371/journal.pcbi.1000665, 2824598, 20174603.
    • (2010) PLoS computational biology , vol.6
    • Kim, S.1    Aladjem, M.I.2    McFadden, G.B.3    Kohn, K.W.4
  • 4
    • 18144380735 scopus 로고    scopus 로고
    • Molecular interaction map of the p53 and Mdm2 logic elements, which control the Off-On switch of p53 in response to DNA damage
    • 10.1016/j.bbrc.2005.03.186, 15865937
    • Kohn KW, Pommier Y. Molecular interaction map of the p53 and Mdm2 logic elements, which control the Off-On switch of p53 in response to DNA damage. Biochemical and biophysical research communications 2005, 331:816-827. 10.1016/j.bbrc.2005.03.186, 15865937.
    • (2005) Biochemical and biophysical research communications , vol.331 , pp. 816-827
    • Kohn, K.W.1    Pommier, Y.2
  • 5
    • 3042808208 scopus 로고    scopus 로고
    • Properties of switch-like bioregulatory networks studied by simulation of the hypoxia response control system
    • 10.1091/mbc.E03-12-0897, 452562, 15107465
    • Kohn KW, Riss J, Aprelikova O, Weinstein JN, Pommier Y, Barrett JC. Properties of switch-like bioregulatory networks studied by simulation of the hypoxia response control system. Molecular biology of the cell 2004, 15:3042-3052. 10.1091/mbc.E03-12-0897, 452562, 15107465.
    • (2004) Molecular biology of the cell , vol.15 , pp. 3042-3052
    • Kohn, K.W.1    Riss, J.2    Aprelikova, O.3    Weinstein, J.N.4    Pommier, Y.5    Barrett, J.C.6
  • 6
    • 2442464889 scopus 로고    scopus 로고
    • Apoptosis defects and chemotherapy resistance: molecular interaction maps and networks
    • 10.1038/sj.onc.1207515, 15077155
    • Pommier Y, Sordet O, Antony S, Hayward RL, Kohn KW. Apoptosis defects and chemotherapy resistance: molecular interaction maps and networks. Oncogene 2004, 23:2934-2949. 10.1038/sj.onc.1207515, 15077155.
    • (2004) Oncogene , vol.23 , pp. 2934-2949
    • Pommier, Y.1    Sordet, O.2    Antony, S.3    Hayward, R.L.4    Kohn, K.W.5
  • 7
    • 22944462043 scopus 로고    scopus 로고
    • Targeting chk2 kinase: molecular interaction maps and therapeutic rationale
    • 10.2174/1381612054546716, 16101442
    • Pommier Y, Sordet O, Rao VA, Zhang H, Kohn KW. Targeting chk2 kinase: molecular interaction maps and therapeutic rationale. Current pharmaceutical design 2005, 11:2855-2872. 10.2174/1381612054546716, 16101442.
    • (2005) Current pharmaceutical design , vol.11 , pp. 2855-2872
    • Pommier, Y.1    Sordet, O.2    Rao, V.A.3    Zhang, H.4    Kohn, K.W.5
  • 10
    • 50849139490 scopus 로고    scopus 로고
    • Cataloging and organizing p73 interactions in cell cycle arrest and apoptosis
    • 10.1093/nar/gkn481, 2528188, 18660513
    • Tozluoǧlu M, Karaca E, Haliloglu T, Nussinov R. Cataloging and organizing p73 interactions in cell cycle arrest and apoptosis. Nucleic acids research 2008, 36:5033-5049. 10.1093/nar/gkn481, 2528188, 18660513.
    • (2008) Nucleic acids research , vol.36 , pp. 5033-5049
    • Tozluoǧlu, M.1    Karaca, E.2    Haliloglu, T.3    Nussinov, R.4
  • 12
    • 77958130983 scopus 로고    scopus 로고
    • Cancer chemoprevention mechanisms mediated through the Keap1-Nrf2 pathway
    • 10.1089/ars.2010.3221, 21590811
    • Hayes JD, McMahon M, Chowdhry S, Dinkova-Kostova AT. Cancer chemoprevention mechanisms mediated through the Keap1-Nrf2 pathway. Antioxidants & redox signaling 2010, 13:1713-1748. 10.1089/ars.2010.3221, 21590811.
    • (2010) Antioxidants & redox signaling , vol.13 , pp. 1713-1748
    • Hayes, J.D.1    McMahon, M.2    Chowdhry, S.3    Dinkova-Kostova, A.T.4
  • 15
    • 77956507353 scopus 로고    scopus 로고
    • BioPAX - Biological Pathways Exchange Language Level 2, Version 1.0 Documentation
    • BioPAX Workgroup
    • BioPAX Workgroup BioPAX - Biological Pathways Exchange Language Level 2, Version 1.0 Documentation. 2005, BioPAX Workgroup.
    • (2005)
  • 18
    • 70449347441 scopus 로고    scopus 로고
    • Challenges for automatically extracting molecular interactions from full-text articles
    • 10.1186/1471-2105-10-311, 2761905, 19778419
    • McIntosh T, Curran JR. Challenges for automatically extracting molecular interactions from full-text articles. BMC bioinformatics 2009, 10:311. 10.1186/1471-2105-10-311, 2761905, 19778419.
    • (2009) BMC bioinformatics , vol.10 , pp. 311
    • McIntosh, T.1    Curran, J.R.2
  • 21
    • 30044440098 scopus 로고    scopus 로고
    • Molecular interaction maps of bioregulatory networks: a general rubric for systems biology
    • 1345641, 16267266
    • Kohn KW, Aladjem MI, Weinstein JN, Pommier Y. Molecular interaction maps of bioregulatory networks: a general rubric for systems biology. Molecular biology of the cell 2006, 17:1-13. 1345641, 16267266.
    • (2006) Molecular biology of the cell , vol.17 , pp. 1-13
    • Kohn, K.W.1    Aladjem, M.I.2    Weinstein, J.N.3    Pommier, Y.4
  • 22
    • 33750735728 scopus 로고    scopus 로고
    • Depicting combinatorial complexity with the molecular interaction map notation
    • 1681518, 17016517
    • Kohn KW, Aladjem MI, Kim S, Weinstein JN, Pommier Y. Depicting combinatorial complexity with the molecular interaction map notation. Molecular systems biology 2006, 2:51. 1681518, 17016517.
    • (2006) Molecular systems biology , vol.2 , pp. 51
    • Kohn, K.W.1    Aladjem, M.I.2    Kim, S.3    Weinstein, J.N.4    Pommier, Y.5
  • 24
    • 0003328608 scopus 로고    scopus 로고
    • Extensible Markup Language (XML) 1.0
    • World Wide Web Consortium, Bray T, Paoli J, Sperberg-McQueen CM, xxiii + 426
    • Bray T, Paoli J, Sperberg-McQueen CM, Maler E, Yergeau F. Extensible Markup Language (XML) 1.0. W3C Recommendation 1998, 6. World Wide Web Consortium, Bray T, Paoli J, Sperberg-McQueen CM, xxiii + 426.
    • (1998) W3C Recommendation , vol.6
    • Bray, T.1    Paoli, J.2    Sperberg-McQueen, C.M.3    Maler, E.4    Yergeau, F.5
  • 26
    • 79959210378 scopus 로고    scopus 로고
    • Information technology - Document Schema Definition Languages (DSDL) - Part 3: Rule-based validation - Schematron
    • ISO
    • Jelliffe R. Information technology - Document Schema Definition Languages (DSDL) - Part 3: Rule-based validation - Schematron. 2006, ISO.
    • (2006)
    • Jelliffe, R.1
  • 29
    • 33645241830 scopus 로고    scopus 로고
    • VANTED: a system for advanced data analysis and visualization in the context of biological networks
    • 10.1186/1471-2105-7-109, 1413562, 16519817
    • Junker BH, Klukas C, Schreiber F. VANTED: a system for advanced data analysis and visualization in the context of biological networks. BMC Bioinformatics 2006, 7:109. 10.1186/1471-2105-7-109, 1413562, 16519817.
    • (2006) BMC Bioinformatics , vol.7 , pp. 109
    • Junker, B.H.1    Klukas, C.2    Schreiber, F.3
  • 30
    • 9444266171 scopus 로고    scopus 로고
    • CellDesigner: a process diagram editor for gene-regulatory and biochemical networks
    • Funahashi A, Tanimura N, Morohashi M, Kitano H. CellDesigner: a process diagram editor for gene-regulatory and biochemical networks. BIOSILICO 2003, 1:159-162.
    • (2003) BIOSILICO , vol.1 , pp. 159-162
    • Funahashi, A.1    Tanimura, N.2    Morohashi, M.3    Kitano, H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.