-
1
-
-
77949417518
-
Metabolomics approaches for discovering biomarkers of drug-induced hepatotoxicity and nephrotoxicity
-
Beger R.D., Sun J., Schnackenberg L.K. Metabolomics approaches for discovering biomarkers of drug-induced hepatotoxicity and nephrotoxicity. Toxicol. Appl. Pharmacol. 2010, 243:154-166.
-
(2010)
Toxicol. Appl. Pharmacol.
, vol.243
, pp. 154-166
-
-
Beger, R.D.1
Sun, J.2
Schnackenberg, L.K.3
-
2
-
-
50349092811
-
Absolute quantitation of intracellular metabolite concentrations by an isotope ratio-based approach
-
Bennett B.D., Yuan J., Kimball E.H., Rabinowitz J.D. Absolute quantitation of intracellular metabolite concentrations by an isotope ratio-based approach. Nat. Protoc. 2008, 3:1299-1311.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1299-1311
-
-
Bennett, B.D.1
Yuan, J.2
Kimball, E.H.3
Rabinowitz, J.D.4
-
3
-
-
33749440288
-
FCCP is cardioprotective at concentrations that cause mitochondrial oxidation without detectable depolarisation
-
Brennan J.P., Berry R.G., Baghai M., Duchen M.R., Shattock M.J. FCCP is cardioprotective at concentrations that cause mitochondrial oxidation without detectable depolarisation. Cardiovasc. Res. 2006, 72:322-330.
-
(2006)
Cardiovasc. Res.
, vol.72
, pp. 322-330
-
-
Brennan, J.P.1
Berry, R.G.2
Baghai, M.3
Duchen, M.R.4
Shattock, M.J.5
-
4
-
-
77952985821
-
Ultrahigh performance liquid chromatography-tandem mass spectrometry method for fast and robust quantification of anionic and aromatic metabolites
-
Buescher J.M., Moco S., Sauer U., Zamboni N. Ultrahigh performance liquid chromatography-tandem mass spectrometry method for fast and robust quantification of anionic and aromatic metabolites. Anal. Chem. 2010, 82:4403-4412.
-
(2010)
Anal. Chem.
, vol.82
, pp. 4403-4412
-
-
Buescher, J.M.1
Moco, S.2
Sauer, U.3
Zamboni, N.4
-
5
-
-
13544262322
-
Competition of electrons to enter the respiratory chain: a new regulatory mechanism of oxidative metabolism in Saccharomyces cerevisiae
-
Bunoust O., Devin A., Avéret N., Camougrand N., Rigoulet M. Competition of electrons to enter the respiratory chain: a new regulatory mechanism of oxidative metabolism in Saccharomyces cerevisiae. J Biol Chem. 2005, 280:3407-3413.
-
(2005)
J Biol Chem.
, vol.280
, pp. 3407-3413
-
-
Bunoust, O.1
Devin, A.2
Avéret, N.3
Camougrand, N.4
Rigoulet, M.5
-
6
-
-
51649104270
-
Leakage-free rapid quenching technique for yeast metabolomics
-
doi:10.1007/s11306-008-0116-4
-
Canelas A.B., Ras R., ten Pierick A., van Dam J.C., Heijnen J.J., van Gulik W.M. Leakage-free rapid quenching technique for yeast metabolomics. Metabolomics 2008, doi:10.1007/s11306-008-0116-4.
-
(2008)
Metabolomics
-
-
Canelas, A.B.1
Ras, R.2
ten Pierick, A.3
van Dam, J.C.4
Heijnen, J.J.5
van Gulik, W.M.6
-
7
-
-
58149185126
-
BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009
-
Chang A., Scheer M., Grote A., Schomburg I., Schomburg D. BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009. Nucleic Acids Res. 2009, 37:D588-592.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Chang, A.1
Scheer, M.2
Grote, A.3
Schomburg, I.4
Schomburg, D.5
-
8
-
-
77954457415
-
Towards quantitative metabolomics of mammalian cells: development of a metabolite extraction protocol
-
Dietmair S., Timmins N.E., Gray P.P., Nielsen L.K., Kromer J.O. Towards quantitative metabolomics of mammalian cells: development of a metabolite extraction protocol. Anal. Biochem. 2010, 404:155-164.
-
(2010)
Anal. Biochem.
, vol.404
, pp. 155-164
-
-
Dietmair, S.1
Timmins, N.E.2
Gray, P.P.3
Nielsen, L.K.4
Kromer, J.O.5
-
9
-
-
28244435454
-
Proton pumping by complex I (NADH:ubiquinone oxidoreductase) from Yarrowia lipolytica reconstituted into proteoliposomes
-
Drose S., Galkin A., Brandt U. Proton pumping by complex I (NADH:ubiquinone oxidoreductase) from Yarrowia lipolytica reconstituted into proteoliposomes. Biochim. Biophys. Acta 2005, 1710:87-95.
-
(2005)
Biochim. Biophys. Acta
, vol.1710
, pp. 87-95
-
-
Drose, S.1
Galkin, A.2
Brandt, U.3
-
10
-
-
0003826721
-
-
Umetrics Academy, Umea, Schweden, ISBN 91-973730-1-X
-
Eriksson L., Johansson E., Kettaneh-Wold N., Wold S. Multi- and Megavariate Data Analysis - Principles and Applications 2001, Umetrics Academy, Umea, Schweden, ISBN 91-973730-1-X.
-
(2001)
Multi- and Megavariate Data Analysis - Principles and Applications
-
-
Eriksson, L.1
Johansson, E.2
Kettaneh-Wold, N.3
Wold, S.4
-
11
-
-
24044471810
-
Superoxide radical formation by pure complex I (NADH: ubiquinone oxidoreductase) from Yarrowia lipolytica
-
Galkin A., Brandt U. Superoxide radical formation by pure complex I (NADH: ubiquinone oxidoreductase) from Yarrowia lipolytica. J. Biol. Chem. 2005, 280:30129-30135.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 30129-30135
-
-
Galkin, A.1
Brandt, U.2
-
12
-
-
0016592229
-
Gylcerol-3-phosphate shuttle and its function in intermediary metabolism of hamster brown-adipose tissue
-
Houstěk J., Cannon B., Lindberg O. Gylcerol-3-phosphate shuttle and its function in intermediary metabolism of hamster brown-adipose tissue. Eur J Biochem. 1975, 54:11-18.
-
(1975)
Eur J Biochem.
, vol.54
, pp. 11-18
-
-
Houstěk, J.1
Cannon, B.2
Lindberg, O.3
-
13
-
-
71749110589
-
Analysis of in vitro toxicity of five cell-penetrating peptides by metabolic profiling
-
Kilk K., Mahlapuu R., Soomets U., Langel U. Analysis of in vitro toxicity of five cell-penetrating peptides by metabolic profiling. Toxicology 2009, 265:87-95.
-
(2009)
Toxicology
, vol.265
, pp. 87-95
-
-
Kilk, K.1
Mahlapuu, R.2
Soomets, U.3
Langel, U.4
-
14
-
-
0032472215
-
Rotenone-insensitive internal NADH-quinone oxidoreductase of Saccharomyces cerevisiae mitochondria: the enzyme expressed in Escherichia coli acts as a member of the respiratory chain in the host cells
-
Kitajima-Ihara T., Yagi T. Rotenone-insensitive internal NADH-quinone oxidoreductase of Saccharomyces cerevisiae mitochondria: the enzyme expressed in Escherichia coli acts as a member of the respiratory chain in the host cells. FEBS Lett. 1998, 421:37-40.
-
(1998)
FEBS Lett.
, vol.421
, pp. 37-40
-
-
Kitajima-Ihara, T.1
Yagi, T.2
-
15
-
-
33846995458
-
Metabolic flux analysis of a glycerol-overproducing Saccharomyces cerevisiae strain based on GC-MS, LC-MS and NMR-derived C-labelling data
-
Kleijn R.J., Geertman J.M., Nfor B.K., Ras C., Schipper D., Pronk J.T., Heijnen J.J., van Maris A.J., van Winden W.A. Metabolic flux analysis of a glycerol-overproducing Saccharomyces cerevisiae strain based on GC-MS, LC-MS and NMR-derived C-labelling data. FEMS Yeast Res. 2007, 7:216-231.
-
(2007)
FEMS Yeast Res.
, vol.7
, pp. 216-231
-
-
Kleijn, R.J.1
Geertman, J.M.2
Nfor, B.K.3
Ras, C.4
Schipper, D.5
Pronk, J.T.6
Heijnen, J.J.7
van Maris, A.J.8
van Winden, W.A.9
-
16
-
-
43649098283
-
High quality metabolomic data for Chlamydomonas reinhardtii
-
Lee do Y., Fiehn O. High quality metabolomic data for Chlamydomonas reinhardtii. Plant Methods 2008, 4:7.
-
(2008)
Plant Methods
, vol.4
, pp. 7
-
-
Lee do, Y.1
Fiehn, O.2
-
17
-
-
77953105101
-
Gluconeogenic carbon flow of tricarboxylic acid cycle intermediates is critical for Mycobacterium tuberculosis to establish and maintain infection
-
Marrero J., Rhee K.Y., Schnappinger D., Pethe K., Ehrt S. Gluconeogenic carbon flow of tricarboxylic acid cycle intermediates is critical for Mycobacterium tuberculosis to establish and maintain infection. Proceedings of the National Academy of Sciences of the United States of America, 107 2010, 9819-9824.
-
(2010)
Proceedings of the National Academy of Sciences of the United States of America, 107
, pp. 9819-9824
-
-
Marrero, J.1
Rhee, K.Y.2
Schnappinger, D.3
Pethe, K.4
Ehrt, S.5
-
18
-
-
0024324318
-
Intracellular acidosis protects cultured hepatocytes from the toxic consequences of a loss of mitochondrial energization
-
Masaki N., Thomas A.P., Hoek J.B., Farber J.L. Intracellular acidosis protects cultured hepatocytes from the toxic consequences of a loss of mitochondrial energization. Arch. Biochem. Biophys. 1989, 272:152-161.
-
(1989)
Arch. Biochem. Biophys.
, vol.272
, pp. 152-161
-
-
Masaki, N.1
Thomas, A.P.2
Hoek, J.B.3
Farber, J.L.4
-
19
-
-
33846303951
-
Metabolome dynamic responses of Saccharomyces cerevisiae to simultaneous rapid perturbations in external electron acceptor and electron donor
-
Mashego M.R., van Gulik W.M., Heijnen J.J. Metabolome dynamic responses of Saccharomyces cerevisiae to simultaneous rapid perturbations in external electron acceptor and electron donor. FEMS Yeast Res. 2007, 7:48-66.
-
(2007)
FEMS Yeast Res.
, vol.7
, pp. 48-66
-
-
Mashego, M.R.1
van Gulik, W.M.2
Heijnen, J.J.3
-
20
-
-
1442326111
-
MIRACLE: mass isotopomer ratio analysis of U-13C-labeled extracts. A new method for accurate quantification of changes in concentrations of intracellular metabolites
-
Mashego M.R., Wu L., Van Dam J.C., Ras C., Vinke J.L., Van Winden W.A., Van Gulik W.M., Heijnen J.J. MIRACLE: mass isotopomer ratio analysis of U-13C-labeled extracts. A new method for accurate quantification of changes in concentrations of intracellular metabolites. Biotechnol. Bioeng. 2004, 85:620-628.
-
(2004)
Biotechnol. Bioeng.
, vol.85
, pp. 620-628
-
-
Mashego, M.R.1
Wu, L.2
Van Dam, J.C.3
Ras, C.4
Vinke, J.L.5
Van Winden, W.A.6
Van Gulik, W.M.7
Heijnen, J.J.8
-
21
-
-
77952886120
-
A protocol for the investigation of the intracellular Staphylococcus aureus metabolome
-
Meyer H., Liebeke M., Lalk M. A protocol for the investigation of the intracellular Staphylococcus aureus metabolome. Anal. Biochem. 2010, 401:250-259.
-
(2010)
Anal. Biochem.
, vol.401
, pp. 250-259
-
-
Meyer, H.1
Liebeke, M.2
Lalk, M.3
-
22
-
-
0021061819
-
Rapid colorimetric assay for cellular growth and survival: application to proliferation and cytotoxicity assays
-
Mosmann T. Rapid colorimetric assay for cellular growth and survival: application to proliferation and cytotoxicity assays. J. Immunol. Methods 1983, 65:55-63.
-
(1983)
J. Immunol. Methods
, vol.65
, pp. 55-63
-
-
Mosmann, T.1
-
23
-
-
53649110425
-
Systems-level metabolic flux profiling identifies fatty acid synthesis as a target for antiviral therapy
-
Munger J., Bennett B.D., Parikh A., Feng X.J., McArdle J., Rabitz H.A., Shenk T., Rabinowitz J.D. Systems-level metabolic flux profiling identifies fatty acid synthesis as a target for antiviral therapy. Nat. Biotechnol. 2008, 26:1179-1186.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1179-1186
-
-
Munger, J.1
Bennett, B.D.2
Parikh, A.3
Feng, X.J.4
McArdle, J.5
Rabitz, H.A.6
Shenk, T.7
Rabinowitz, J.D.8
-
24
-
-
0028001390
-
ATP depletion rather than mitochondrial depolarization mediates hepatocyte killing after metabolic inhibition
-
Nieminen A.L., Saylor A.K., Herman B., Lemasters J.J. ATP depletion rather than mitochondrial depolarization mediates hepatocyte killing after metabolic inhibition. Am. J. Physiol. 1994, 267:C67-74.
-
(1994)
Am. J. Physiol.
, vol.267
-
-
Nieminen, A.L.1
Saylor, A.K.2
Herman, B.3
Lemasters, J.J.4
-
25
-
-
34047177923
-
Metabolic flux analysis at ultra short time scale: isotopically non-stationary 13C labeling experiments
-
Noh K., Gronke K., Luo B., Takors R., Oldiges M., Wiechert W. Metabolic flux analysis at ultra short time scale: isotopically non-stationary 13C labeling experiments. J. Biotechnol. 2007, 129:249-267.
-
(2007)
J. Biotechnol.
, vol.129
, pp. 249-267
-
-
Noh, K.1
Gronke, K.2
Luo, B.3
Takors, R.4
Oldiges, M.5
Wiechert, W.6
-
26
-
-
0037008725
-
Kinetic regulation of the mitochondrial glycerol-3-phosphate dehydrogenase by the external NADH dehydrogenase in Saccharomyces cerevisiae
-
Pahlman I.L., Larsson C., Averet N., Bunoust O., Boubekeur S., Gustafsson L., Rigoulet M. Kinetic regulation of the mitochondrial glycerol-3-phosphate dehydrogenase by the external NADH dehydrogenase in Saccharomyces cerevisiae. J. Biol. Chem. 2002, 277:27991-27995.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 27991-27995
-
-
Pahlman, I.L.1
Larsson, C.2
Averet, N.3
Bunoust, O.4
Boubekeur, S.5
Gustafsson, L.6
Rigoulet, M.7
-
27
-
-
37549064772
-
Simultaneous extraction of several metabolites of energy metabolism and related substances in mammalian cells: optimization using experimental design
-
Ritter J.B., Genzel Y., Reichl U. Simultaneous extraction of several metabolites of energy metabolism and related substances in mammalian cells: optimization using experimental design. Anal. Biochem. 2008, 373:349-369.
-
(2008)
Anal. Biochem.
, vol.373
, pp. 349-369
-
-
Ritter, J.B.1
Genzel, Y.2
Reichl, U.3
-
28
-
-
33745209659
-
Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption
-
Soga T., Baran R., Suematsu M., Ueno Y., Ikeda S., Sakurakawa T., Kakazu Y., Ishikawa T., Robert M., Nishioka T., Tomita M. Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption. J. Biol. Chem. 2006, 281:16768-16776.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 16768-16776
-
-
Soga, T.1
Baran, R.2
Suematsu, M.3
Ueno, Y.4
Ikeda, S.5
Sakurakawa, T.6
Kakazu, Y.7
Ishikawa, T.8
Robert, M.9
Nishioka, T.10
Tomita, M.11
-
29
-
-
67349235296
-
A direct cell quenching method for cell-culture based metabolomics
-
Teng Q., Hung W., Collette T.W., Ekman D.R., Tan C. A direct cell quenching method for cell-culture based metabolomics. Metabolomics 2009, 5:199-208.
-
(2009)
Metabolomics
, vol.5
, pp. 199-208
-
-
Teng, Q.1
Hung, W.2
Collette, T.W.3
Ekman, D.R.4
Tan, C.5
-
31
-
-
66149148316
-
Quantitative phosphorus metabolomics using nanoflow liquid chromatography-tandem mass spectrometry and culture-derived comprehensive global internal standards
-
Uehara T., Yokoi A., Aoshima K., Tanaka S., Kadowaki T., Tanaka M., Oda Y. Quantitative phosphorus metabolomics using nanoflow liquid chromatography-tandem mass spectrometry and culture-derived comprehensive global internal standards. Anal. Chem. 2009, 81:3836-3842.
-
(2009)
Anal. Chem.
, vol.81
, pp. 3836-3842
-
-
Uehara, T.1
Yokoi, A.2
Aoshima, K.3
Tanaka, S.4
Kadowaki, T.5
Tanaka, M.6
Oda, Y.7
-
32
-
-
0026719153
-
The purine nucleotide cycle and its molecular defects
-
Van den Berghe G., Bontemps F., Vincent M.F., Van den Bergh F. The purine nucleotide cycle and its molecular defects. Prog. Neurobiol. 1992, 39:547-561.
-
(1992)
Prog. Neurobiol.
, vol.39
, pp. 547-561
-
-
Van den Berghe, G.1
Bontemps, F.2
Vincent, M.F.3
Van den Bergh, F.4
-
33
-
-
77955927758
-
The individual and combined metabolite profiles (metabolomics) of dibutylphthalate and di(2-ethylhexyl)phthalate following a 28-day dietary exposure in rats
-
van Ravenzwaay B., Coelho-Palermo Cunha G., Strauss V., Wiemer J., Leibold E., Kamp H., Walk T., Mellert W., Looser R., Prokoudine A., Fabian E., Krennrich G., Herold M. The individual and combined metabolite profiles (metabolomics) of dibutylphthalate and di(2-ethylhexyl)phthalate following a 28-day dietary exposure in rats. Toxicol Lett. 2010, 98:159-170.
-
(2010)
Toxicol Lett.
, vol.98
, pp. 159-170
-
-
van Ravenzwaay, B.1
Coelho-Palermo Cunha, G.2
Strauss, V.3
Wiemer, J.4
Leibold, E.5
Kamp, H.6
Walk, T.7
Mellert, W.8
Looser, R.9
Prokoudine, A.10
Fabian, E.11
Krennrich, G.12
Herold, M.13
-
34
-
-
37849024323
-
A novel in vitro metabolomics approach for neurotoxicity testing, proof of principle for methyl mercury chloride and caffeine
-
van Vliet E., Morath S., Eskes C., Linge J., Rappsilber J., Honegger P., Hartung T., Coecke S. A novel in vitro metabolomics approach for neurotoxicity testing, proof of principle for methyl mercury chloride and caffeine. Neurotoxicology 2008, 29:1-12.
-
(2008)
Neurotoxicology
, vol.29
, pp. 1-12
-
-
van Vliet, E.1
Morath, S.2
Eskes, C.3
Linge, J.4
Rappsilber, J.5
Honegger, P.6
Hartung, T.7
Coecke, S.8
-
35
-
-
28044440100
-
Global metabolite analysis of yeast: evaluation of sample preparation methods
-
Villas-Boas S.G., Hojer-Pedersen J., Akesson M., Smedsgaard J., Nielsen J. Global metabolite analysis of yeast: evaluation of sample preparation methods. Yeast 2005, 22:1155-1169.
-
(2005)
Yeast
, vol.22
, pp. 1155-1169
-
-
Villas-Boas, S.G.1
Hojer-Pedersen, J.2
Akesson, M.3
Smedsgaard, J.4
Nielsen, J.5
-
36
-
-
41149120242
-
Visualization of GC/TOF-MS-based metabolomics data for identification of biochemically interesting compounds using OPLS class models
-
Wiklund S., Johansson E., Sjoestroem L. Visualization of GC/TOF-MS-based metabolomics data for identification of biochemically interesting compounds using OPLS class models. Anal. Chem. 2008, 80:115-122.
-
(2008)
Anal. Chem.
, vol.80
, pp. 115-122
-
-
Wiklund, S.1
Johansson, E.2
Sjoestroem, L.3
-
37
-
-
42349111860
-
Global metabolic profiling of Escherichia coli cultures: an evaluation of methods for quenching and extraction of intracellular metabolites
-
Winder C.L., Dunn W.B., Schuler S., Broadhurst D., Jarvis R., Stephens G.M., Goodacre R. Global metabolic profiling of Escherichia coli cultures: an evaluation of methods for quenching and extraction of intracellular metabolites. Anal. Chem. 2008, 80:2939-2948.
-
(2008)
Anal. Chem.
, vol.80
, pp. 2939-2948
-
-
Winder, C.L.1
Dunn, W.B.2
Schuler, S.3
Broadhurst, D.4
Jarvis, R.5
Stephens, G.M.6
Goodacre, R.7
-
38
-
-
1642374638
-
Impact of the cold shock phenomenon on quantification of intracellular metabolites in bacteria
-
Wittmann C., Kromer J.O., Kiefer P., Binz T., Heinzle E. Impact of the cold shock phenomenon on quantification of intracellular metabolites in bacteria. Anal. Biochem. 2004, 327:135-139.
-
(2004)
Anal. Biochem.
, vol.327
, pp. 135-139
-
-
Wittmann, C.1
Kromer, J.O.2
Kiefer, P.3
Binz, T.4
Heinzle, E.5
-
39
-
-
69249150110
-
Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli
-
Yuan J., Doucette C.D., Fowler W.U., Feng X.J., Piazza M., Rabitz H.A., Wingreen N.S., Rabinowitz J.D. Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli. Mol. Syst. Biol. 2009, 5:302.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 302
-
-
Yuan, J.1
Doucette, C.D.2
Fowler, W.U.3
Feng, X.J.4
Piazza, M.5
Rabitz, H.A.6
Wingreen, N.S.7
Rabinowitz, J.D.8
-
40
-
-
33748878445
-
Kinetic flux profiling of nitrogen assimilation in Escherichia coli
-
Yuan J., Fowler W.U., Kimball E., Lu W., Rabinowitz J.D. Kinetic flux profiling of nitrogen assimilation in Escherichia coli. Nat. Chem. Biol. 2006, 2:529-530.
-
(2006)
Nat. Chem. Biol.
, vol.2
, pp. 529-530
-
-
Yuan, J.1
Fowler, W.U.2
Kimball, E.3
Lu, W.4
Rabinowitz, J.D.5
|