The roche cancer genome database 2.0

BMC Medical Genomics

Volumn 4, Issue , 2011, Pages

  Küntzer, Jan ^a   Maisel, Daniela ^a   Lenhof, Hans Peter ^b   Klostermann, Stefan ^a   Burtscher, Helmut ^a  

^a ROCHE DIAGNOSTICS GMBH   (Germany)

^b SAARLAND UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ARTICLE; BIOINFORMATICS; CANCER GENETICS; COMPUTER INTERFACE; GENE MUTATION; GENETIC DATABASE; INFORMATION RETRIEVAL; PRIORITY JOURNAL; ROCHE CANCER GENOME DATABASE; SINGLE NUCLEOTIDE POLYMORPHISM; GENETICS; HUMAN; HUMAN GENOME; MUTATION; NEOPLASM; SEARCH ENGINE;

EPIDERMAL GROWTH FACTOR RECEPTOR; EPIDERMAL GROWTH FACTOR RECEPTOR 2; ERBB2 PROTEIN, HUMAN;

DATABASES, GENETIC; GENOME, HUMAN; HUMANS; MUTATION; NEOPLASMS; RECEPTOR, EPIDERMAL GROWTH FACTOR; RECEPTOR, ERBB-2; SEARCH ENGINE;

EID: 79955956964     PISSN: None     EISSN: 17558794     Source Type: Journal    
DOI: 10.1186/1755-8794-4-43     Document Type: Article

References (25)

1. The genetic basis of human cancer. B Vogelstein K Kinzler, McGraw-Hill Professional 2002
2. High-throughput oncogene mutation profiling in human cancer. RK Thomas AC Baker RM Debiasi W Winckler T Laframboise WM Lin M Wang W Feng T Zander L MacConaill,, et al. Nat Genet 2007 39 347 351 10.1038/ng1975 17293865 (Pubitemid 46328493)
3. The Genomic Landscapes of Human Breast and Colorectal Cancers. L Wood D Parsons S Jones J Lin T Sjoblom R Leary D Shen S Boca T Barber J Ptak,, et al. Science 2007 318
4. A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer. P Stephens S Edkins H Davies C Greenman C Cox C Hunter G Bignell J Teague R Smith C Stevens,, et al. Nat Genet 2005 37 590 592 10.1038/ng1571 15908952 (Pubitemid 40770413)
5. Somatic mutations of the protein kinase gene family in human lung cancer. H Davies C Hunter R Smith P Stephens C Greenman G Bignell J Teague A Butler S Edkins C Stevens,, et al. Cancer Res 2005 65 7591 7595 16140923 (Pubitemid 41297230)
6. Mutational analysis of the tyrosine phosphatome in colorectal cancers. Z Wang D Shen DW Parsons A Bardelli J Sager S Szabo J Ptak N Silliman BA Peters MS van der Heijden,, et al. Science 2004 304 1164 1166 10.1126/science.1096096 15155950 (Pubitemid 38661854)
7. Sequence analysis of the protein kinase gene family in human testicular germ-cell tumors of adolescents and adults. G Bignell R Smith C Hunter P Stephens H Davies C Greenman J Teague A Butler S Edkins C Stevens,, et al. Genes Chromosomes Cancer 2006 45 42 46 10.1002/gcc.20265 16175573 (Pubitemid 46930860)
8. Somatic mutations in human cancer: insights from resequencing the protein kinase gene family. PA Futreal R Wooster MR Stratton, Cold Spring Harb Symp Quant Biol 2005 70 43 49 10.1101/sqb.2005.70.015 16869737 (Pubitemid 44131319)
9. Cancer: drivers and passengers. DA Haber J Settleman, Nature 2007 446 145 146 10.1038/446145a 17344839 (Pubitemid 46398653)
10. A census of human cancer genes. P Futreal L Coin M Marshall T Down T Hubbard R Wooster N Rahman M Stratton, Nat Rev Cancer 2004 4
11. The cancer genome. MR Stratton PJ Campbell PA Futreal, Nature 2009 458 719 724 10.1038/nature07943 19360079
12. Patterns of somatic mutation in human cancer genomes. C Greenman P Stephens R Smith G Dalgliesh C Hunter G Bignell H Davies J Teague A Butler C Stevens,, et al. Nature 2007 446
13. The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources. GR Cochrane MY Galperin, Nucleic Acids Res 2010 38 1 D4 10.1093/nar/gkp1077 19965766
14. The Roche Cancer Genome database (RCGDB). J Kuntzer D Eggle HP Lenhof H Burtscher S Klostermann, Hum Mutat 2010 31 407 413 10.1002/humu.21207 20127971
15. The Catalogue of Somatic Mutations in Cancer (COSMIC). SA Forbes G Bhamra S Bamford E Dawson C Kok J Clements A Menzies JW Teague PA Futreal MR Stratton, Curr Protoc Hum Genet 2008 10
16. Comprehensive genomic characterization defines human glioblastoma genes and core pathways. R Mclendon A Friedman D Bigner E Van Meir D Brat MG Mastrogianakis J Olson T Mikkelsen N Lehman K Aldape,, et al. Nature 2008 455 1061 1068 10.1038/nature07385 18772890
17. Impact of mutant p53 functional properties on TP53 mutation patterns and tumor phenotype: lessons from recent developments in the IARC TP53 database. A Petitjean E Mathe S Kato C Ishioka SV Tavtigian P Hainaut M Olivier, Hum Mutat 2007 28 622 629 10.1002/humu.20495 17311302 (Pubitemid 46744292)
18. Mendelian Inheritance in Man. VA McKusick, Baltimore: Johns Hopkins University Press 1998
19. KinMutBase: a registry of disease-causing mutations in protein kinase domains. C Ortutay J Valiaho K Stenberg M Vihinen, Hum Mutat 2005 25 435 442 10.1002/humu.20166 15832311 (Pubitemid 40675292)
20. Genotype-phenotype correlations in L1 syndrome: a guide for genetic counselling and mutation analysis. YJ Vos HE de Walle KK Bos JA Stegeman AM Ten Berge M Bruining MC van Maarle MW Elting NS den Hollander B Hamel,, et al. J Med Genet 2009
21. A second generation human haplotype map of over 3.1 million SNPs. KA Frazer DG Ballinger DR Cox DA Hinds LL Stuve RA Gibbs JW Belmont A Boudreau P Hardenbol SM Leal,, et al. Nature 2007 449 851 861 10.1038/nature06258 17943122 (Pubitemid 47598626)
22. dbSNP: the NCBI database of genetic variation. ST Sherry MH Ward M Kholodov J Baker L Phan EM Smigielski K Sirotkin, Nucleic Acids Res 2001 29 308 311 10.1093/nar/29.1.308 11125122 (Pubitemid 32054478)
23. Detection of large-scale variation in the human genome. AJ Iafrate L Feuk MN Rivera ML Listewnik PK Donahoe Y Qi SW Scherer C Lee, Nat Genet 2004 36 949 951 10.1038/ng1416 15286789 (Pubitemid 39167488)
24. The landscape of somatic copy-number alteration across human cancers. R Beroukhim CH Mermel D Porter G Wei S Raychaudhuri J Donovan J Barretina JS Boehm J Dobson M Urashima,, et al. Nature 2010 463 899 905 10.1038/nature08822 20164920
25. KEGG for representation and analysis of molecular networks involving diseases and drugs. M Kanehisa S Goto M Furumichi M Tanabe M Hirakawa, Nucleic Acids Res 2010 38 355 D360 10.1093/nar/gkp896 19880382