Minutisphaera and natipusilla: Two new genera of freshwater dothideomycetes

Mycologia

Volumn 103, Issue 2, 2011, Pages 411-423

  Ferrer, Astrid ^a   Miller, Andrew N ^b   Shearer, Carol A ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b UNIVERSITY OF ILLINOIS   (United States)

Author keywords

Aquatic; Dothideomycetes; Fungal systematics

Indexed keywords

FRESHWATER ECOSYSTEM; FUNGUS; MOLECULAR ANALYSIS; MORPHOLOGY; NEW GENUS; NEW SPECIES; TAXONOMY; TEMPERATE FOREST; WOODY DEBRIS;

CENTRAL AMERICA; NORTH AMERICA; SOUTH AMERICA;

ASCOMYCOTA; DECOROSPORA; DOTHIDEOMYCETES; FARLOWIELLA CARMICHAELIANA;

FRESH WATER; FUNGAL DNA; RIBOSOME DNA;

ARTICLE; ASCOMYCETES; CLASSIFICATION; FUNGUS SPORE; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY;

ASCOMYCOTA; DNA, FUNGAL; DNA, RIBOSOMAL; FRESH WATER; MOLECULAR SEQUENCE DATA; PHYLOGENY; SPORES, FUNGAL;

EID: 79955955584     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/10-177     Document Type: Article

References (30)

1. Edgar R. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797, doi:10.1093/nar/gkh340
2. Ellis JP. 1976. British Microthyrium species and similar fungi. T. Br. Mycol. Soc. 67:381-394, doi:10.1016/S0007-1536 (76)80162-3
3. Ferrer A, Shearer CA. 2005. New records and a new species of Canalisporium from aquatic habitats in Panama. Mycotaxon 93:179-188.
4. Galtier N, Gouy M, Gautier C. 1996. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12:543-548.
5. Huelsenbeck JP, Mark PVD, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. 3.1.2. http:mrbayes.csit.fsu.edu/download.php [Accessed Jan 2009].
6. Inderbitzin P, Landvik S, Abdel-Wahab A, Berbee ML. 2001. Aliquandostipitaceae, a new family for two new tropical ascomycetes with unusually wide hyphae and dimorphic ascomata. Am J Bot 88:52-61, doi:10.2307/2657126
7. Jones EBG. 1994. Ultrastructure and taxonomy of the aquatic ascomycetous order Halosphaeriales. Can J Bot 73(Suppl. 1):S790-S801.
8. Jones EBG. 2006. Form and function of fungal spore appendages. Mycoscience 47:167-183, doi:10.1007/s10267-006-0295-7
9. Jones EBG, Hawksworth DL. 2001. Micropeltopsis quinquecladiopsis belongs in Lichenopeltella. Mycol Res 105:642, doi:10.1017/S0953756201229931
10. Jones EBG, Wong SW, Sivichai S, Au DWT, Hywel-Jones NL. 1999. Lignicolous freshwater Ascomycota from Thailand: Micropeltopsis quinquecladiopsis sp. nov. Mycol Res 103:729-735, doi:10.1017/S0953756298007618
11. Madisson WP, Madisson D. 2000. MacClade: analysis of phylogeny and character evolution. Sunderland, Massachusetts: Sinauer Associates.
12. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 49:817-818, doi:10.1093/bioinformatics/14.9.817
13. Promputtha I, Miller AN. 2010. Three new species of Acanthostigma (Tubeufiaceae, Pleosporales) from the Great Smoky Mountains National Park. Mycologia 102: 574-587, doi:10.3852/09-051
14. Raja HA, Shearer CA. 2006. Jahnula species from North and Central America, including three new species. Mycologia 98:319-332, doi:10.3852/mycologia.98.2.319
15. Raja HA, Shearer CA. 2007. Freshwater ascomycetes: Aliquandostipite minuta (Jahnulales, Dothideomycetes), a new species from Florida. Mycoscience 48:395-398, doi:10.1007/s10267-007-0375-3
16. Ranghoo VM, Hyde KD. 2000. Ascominuta lignicola, a new loculoascomycete from submerged wood in Hong Kong. Mycoscience 41:1-5, doi:10.1007/BF02464379
17. Rehner SA, Samuels GJ. 1994. Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences. Mycol Res 98:625-634, doi:10.1016/S0953-7562(09)80409-7
18. Ronquist FR, Huelsenbeck JP. 2003. MrBayes: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574, doi:10.1093/bioinformatics/btg180
19. Shearer CA. 1993. The feshwater ascomycetes. Nova Hedwigia 56:1-33.
20. Shearer CA, Langsam DM, Longcore JE. 2004. Fungi in Freshwater Habitats. In: Mueller GM, Bills GF, Foster MS, eds. Measuring and monitoring biological diversity: standard methods for Fungi. Washington, DC: Smithsonian Institution Press. p 513-531.
21. Shearer CA, Raja HA, Miller AN, Nelson P, Tanaka K, Hirayama K, Marvanova L, Hyde KD, Zhang Y. 2009. The molecular phylogeny of freshwater Dothideomycetes. Stud Mycol 64:145-153, doi:10.3114/sim.2009.64.08
22. Schoch CL, Crous PW, Groenewald JZ, Boehm EWA, Burgess TI, de Gruyter J, de Hoog GS, Dixon LJ, Grube M, Gueidan C, Harada Y, Hatakeyama S, Hirayama K, Hosoya T, Huhndorf SM, Hyde KD, Jones EBG, Kohlmeyer J, Kruys A, Li YM, Lücking R, Lumbsch HT, Marvanová L, Mbatchou JS, McVay AH, Miller AN, Mugambi GK, Muggia L, Nelsen MP, Nelson P, Owensby CA, Phillips AJL, Phonpaichit S, Pointing SB, Pujade-Renaud V, Raja HA, Rivas Plata E, Robbertse B, Ruibal C, Sakayaroj J, Sano T, Selbmann L, Shearer CA, Shirouzu T, Slippers B, Suetrong S, Tanaka K, Volkmann-Kohlmeyer B, Wingfield MJ, Wood AR, Woudenberg JHC, Yonezawa H, Zhang Y, Spatafora JW. 2009. A classwide phylogenetic assessment of Dothideomycetes. Stud Mycol 64:1-15, doi:10.3114/sim.2009.64.01
23. Schoch CL, Shoemaker RA, Seifert KA, Hambelton S, Spatafora JW, Crous PW. 2006. A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 98: 1041-1052, doi:10.3852/mycologia.98.6.1041
24. Shoemaker RA, Babcock CE. 1987. Wettsteinina. Can J Bot 65:373-405, doi:10.1139/b87-048
25. Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4. Sunderland, Massachusetts: Sinauer Associates.
26. Tsui CKM, Berbee ML. 2006. Phylogenetic relationships and convergence of helicosporous fungi inferred from ribosomal DNA sequences. Mol Phylogenet Evol 39: 587-597, doi:10.1016/j.ympev.2006.01.025
27. Vilgalys R, Hester M. 1990. Rapid identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238-4246.
28. Volkmann-Kohlmeyer B, Kohlmeyer J. 1996. How to prepare truly permanent microscope slides. Mycologist 10:107-108, doi:10.1016/S0269-915X(96)80068-1
29. Wang H-K, Aptroot A, Crous PW, Hyde KD, Jeewon R. 2007. The polyphyletic nature of Pleosporales: an example from Massariosphaeria based on rDNA and RBP2 gene phylogenies. Mycol Res 111:1268-1276, doi:10.1016/ j.mycres.2007.08.014
30. White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JS, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego: Academic Press. p 315-322.