Morphological and molecular characterization of Phytophthora glovera sp. nov. from tobacco in Brazil

Mycologia

Volumn 103, Issue 2, 2011, Pages 341-350

  Gloria Abad, Z ^a   Ivors, Kelly L ^b   Gallup, Courtney A ^b   Abad, Jorge A ^a   Shew, H David ^b  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

tubulin; Amarel o; ITS; Morphology; Oomycetes; Straminipiles; Taxonomy; Translation elongation factor 1

Indexed keywords

INFECTIOUS DISEASE; MORPHOLOGY; PATHOGENICITY; PHYLOGENETICS; ROOT ROT; TOBACCO;

BRAZIL;

FUNGI; NICOTIANA OBTUSIFOLIA; NICOTIANA TABACUM; OOMYCETES; PHYTOPHTHORA; PHYTOPHTHORA CAPSICI; PHYTOPHTHORA GLOVERA; PHYTOPHTHORA NICOTIANAE; PHYTOPHTHORA SP.;

FUNGAL PROTEIN; TUBULIN;

ARTICLE; BRAZIL; CLASSIFICATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PHYTOPHTHORA; PLANT DISEASE; TOBACCO;

BRAZIL; FUNGAL PROTEINS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PHYTOPHTHORA; PLANT DISEASES; TOBACCO; TUBULIN;

EID: 79955951075     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/09-157     Document Type: Article

References (34)

1. Abad ZG, Abad JA. 2001. Integrating morphological and molecular characterization for the identification of new species of Phytophthora: The case of P. bisheria and P. glovera. Phytopathology 91:S1, doi:10.1094/PHY-TO.2001.91.6.S1
2. Abad ZG, Abad JA, Coffey MD, Oudemans PV, Man in 't Veld WA, de Gruyter H, Cunnington J, Louws FJ. 2008. Phytophthora bisheria sp. nov., a new species identified in isolates from the Rosaceous raspberry, rose and strawberry in three continents. Mycologia 100:99-110, doi:10.3852/mycologia.100.1.99
3. Aragaki M, Uchida J. 2001. Morphological distinctions between Phytophthora capsici and P. tropicalis sp. nov. Mycologia 93:137-145, doi:10.2307/3761611
4. Blair JA, Coffey MD, Park S, Geiser DM, Kang S. 2008. A multilocus phylogeny for Phytophthora utilizing markers derived from complete genome sequences. Fungal Genet Biol 45:266-277, doi:10.1016/j.fgb.2007.10.010
5. Cooke DEL, Drenth A, Duncan JM, Wagels G, Brasier CM. 2000. A molecular phylogeny of Phytophthora and related Oomycetes. Fungal Genet Biol 30:17-32, doi:10.1006/fgbi.2000.1202
6. Dick MW. 2001. Straminipilous Fungi: Systematics of the Peronosporomycetes including accounts on the marine straminipilous protists, the plasmodiophorids and similar organisms. Dordrecht, the Netherlands: Kluwer Academic Publishers. 670 p.
7. Donahoo RS, Lamour KH. 2008. Interspecific hybridization and apomixes between Phytophthora capsici and Phytophthora tropicalis. Mycologia 100:911-920, doi:10.3852/08-028
8. Erwin DC, Ribeiro OK. 1996. Phytophthora diseases worldwide. St Paul, Minnesota: American Phytopathological Society. 562 p.
9. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791, doi:10.2307/2408678
10. Hong CX, Gallegly ME, Browne GT, Bhat RG, Richardson PA, Kong P. 2009. The avocado subgroup of Phytophthora citricola constitutes a distinct species, Phytophthora mengei sp. nov. Mycologia 101:833-840, doi:10.3852/08-214
11. Hong CX, Gallegly ME, Richardson PA, Kong P. 2010a. Phytophthora pini Leonian resurrected to distinct species status. Mycologia. (In press).
12. Hong CX, Gallegly ME, Richardson PA, Kong P, Moorman GW, Lea-Cox JD, Ross DS. 2010b. Phytophthora hydropathica, a new pathogen identified from irrigation water, Rhododen- dron catawbiense and Kalmia latifolia. Plant Pathol 59: 913-921, doi:10.1111/j.1365-3059.2010.02323.x
13. Jung T, Burgess TI. 2009. Re-evaluation of Phytophthora citricola isolates from multiple woody hosts in Europe and North America reveals a new species, Phytophthora plurivora sp. nov. Persoonia 22:95-100.
14. Kannwischer ME, Michell DJ. 1978. The influence of a fungicide on the epidemiology of black shank of tobacco. Phytopathology 68:1760-1765, doi:10.1094/Phyto-68-1760
15. Kroon LP, Bakker FT, van den Bosch GB, Bonants PJ, Flier WG. 2004. Phylogenetic analysis of Phytophthora species based on mitochondrial and nuclear DNA sequences. Fungal Genet Biol 41:766-782, doi:10.1016/j.fgb.2004.03.007
16. Levesque CA, de Cock AWAM. 2004. Molecular phylogeny and taxonomy of the genus Pythium. Mycol Res 108: 1363-1383, doi:10.1017/S0953756204001431
17. Martin FN, Tooley PW. 2003. Phylogenetic relationships among Phytophthora species inferred from sequence analysis of mitochondrially encoded cytochrome oxidase I and II genes. Mycologia 95:269-284, doi: 10.2307/3762038
18. Maseko B, Burgess TI, Coutinho TA, Wingfield MJ. 2007. Two new Phytophthora species from South African eucalyptus plantations. Mycol Res 111:321-1338, doi:10.1016/j.mycres.2007.08.011
19. Milne I, Wright F, Rowe G, Marshal DF, Husmeier D, McGuire G. 2004. TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments. Bioinformatics 20:1806-1807, doi:10.1093/bioinformatics/bth155
20. Naher M, Motohash K, Watanabe H, Chikuo Y, Senda M, Suga H, Brasier C, Kageyama K. 2010. Phytophthora chrysanthemi sp. nov., a new species causing root rot of chrysanthemum in Japan. Mycol Prog.
21. Nelson S, Abad ZG. 2010. Phytophthora morindae, a new species causing black flag on Noni (Morinda citrifolia L) in Hawaii. Mycologia 102:122-134, doi:10.3852/ 08-209
22. Nirenberg HI, Gerlach WF, Gräfenhan T. 2009. Phytophthora 3 pelgrandis, a new natural hybrid pathogenic to Pelargonium grandiflorum hort. Mycologia 101: 220-231, doi:10.3852/06-157
23. Oliva RF, Kroon LPNM, Chacón G, Flier WG, Ristaino JB, Forbes GA. 2010. Phytophthora andina sp. nov., a newly identified heterothallic pathogen of solanaceous hosts in the Andean highlands. Plant Pathol 59:613-625, doi:10.1111/j.1365-3059.2010.02287.x
24. Page RDM. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comp Appl Biosci 12:357-358.
25. Reeser PW, Hansen EM, Sutton W. 2007. Phytophthora siskiyouensis, a new species from soil, water, myrtlewood (Umbellularia californica) and tanoak (Lithocarpus densiflorus) in southwestern Oregon. Mycologia 99: 639-643, doi:10.3852/mycologia.99.5.639
26. Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
27. Scott PM, Burgess TI, Barber PA, Shearer BL, Stukely MJC, Hardy GE, Jung T. 2009. Phytophthora multivora sp. nov., a new species recovered from declining Eucalyptus, Banksia, Agonis and other plant species in Western Australia. Persoonia 22:1-13.
28. Shew HD. 1983. Effects of soil matric potential on infection of tobacco by Phytophthora parasitica var. nicotianae. Phytopathology 73:1160-1163, doi:10.1094/Phyto-73-1160
29. Shew HD, Abad ZG, Olivera G, Abad JA. 1999. Morphological and molecular characterization of Phytophthora glovera sp. nov. from tobacco. Phytopathology 89:S72.
30. Shew HD, Lucas GB. 1991. Compendium of tobacco diseases. St Paul, Minnesota: American Phytopathological Soci- ety. 90 p.
31. Stamps DJ, Waterhouse GM, Newhook FJ, Hall GS. 1990. Revised tabular key to the species of Phytophthora. Commonwealth Mycological Society, Kew, UK. Mycol Pap 162.
32. Tamura K, Nei M, Kumar S. 2004. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Nat Acad Sci (USA) 101:11030-11035, doi:10.1073/pnas.0404206101
33. Waterhouse GM. 1963. Key to the Species of Phytophthora de Bary. Mycol Pap 92.
34. White TJ, Bruns T, Lee SB, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego: Academic Press. p 315-322.