Applications of self-organizing map for patterning macrofungal diversity of xerothermic swards

Ecological Research

Volumn 26, Issue 3, 2011, Pages 547-554

  Adamczyk, Jolanta J ^a  

^a UNIVERSITY OF LODZ   (Poland)

Author keywords

Fungi; Habitat factor; IndVal; Self organizing map; Xerothermic vegetation

Indexed keywords

ADAPTATION; ARTIFICIAL NEURAL NETWORK; COHORT ANALYSIS; FUNGUS; JURASSIC; MICROBIAL COMMUNITY; SELF ORGANIZATION; SPECIES DIVERSITY; SPECIES RICHNESS; SWARD; TEMPERATURE TOLERANCE; UNSUPERVISED CLASSIFICATION;

CZESTOCHOWA [POLAND]; POLAND;

BRACHYPODIETUM; FUNGI;

EID: 79955879192     PISSN: 09123814     EISSN: 14401703     Source Type: Journal    
DOI: 10.1007/s11284-011-0812-9     Document Type: Article

References (53)

1. Adamczyk J (2009) Grzyby wielkoowocnikowe zróżnicowanych zbiorowisk muraw kserotermicznych projektowanego rezerwatu krajobrazowego Olsztyńskie Skały (Wyżyna Cze{ogonek}stochowska) (in Polish with English summary). Parki Nar Rez Przyr 28: 101-108.
2. Adamczyk J, Głowacki Ł, Penczak T (2004) Structure of macrofungus communities in different habitats of small postglacial ponds margins. Acta Oecol 25: 53-60.
3. Arnolds E (1981) Ecology and coenology of macrofungi in grasslands and moist heathlands in Drenthe, the Netherlands. Part. 1: Introduction to synecology. Bibl Mycol 83: 1-410.
4. Arnolds E (1994) Mycocoenology of stands of Fagus sylvatica L. in the northeastern Netherlands. Phytocoenologia 24: 507-530.
5. Babczyńska B (1978) Zbiorowiska murawowe okolic Olsztyna koło Cze{ogonek}stochowy. Prace Nauk Uniw Śl 234 (in Polish with English summary). Acta Biologica 5: 169-215.
6. Babczyńska-Sendek B (1984) Zbiorowiska ła{ogonek}kowe i murawowe Wyżyny Cze{ogonek}stochowskiej (in Polish with English summary). PhD thesis, Uniwersytet Śla{ogonek}ski Katowice.
7. Bedoya D, Novotny V, Manolakos ES (2009) Instream and offstream environmental conditions and stream biotic integrity importance of scale and site similarities for learning and prediction. Ecol Model 220: 2393-2406.
8. Céréghino R, Park YS (2009) Review of the self-organizing map (SOM) approach in water resources: commentary. Environ Model Softw 24: 945-947.
9. Chmiel MA (2006) A checklist of Polish larger Ascomycetes. In: Mirek Z (ed) Biodiversity of Poland, vol 8. PAN, Kraków.
10. Cho SB (1997) Self-organizing map with dynamical mode-splitting: application to handwritten digit recognition. Neural Comput 9: 1345-1355.
11. Chon KH, Park TS, Moon YS, Cha EY (1996) Patternizing communities by using an artificial neural network. Ecol Model 90: 69-78.
12. Dennis RWG (1978) British Ascomycetes. Cramer, Vaduz.
13. Dufrene M, Legendre P (1997) Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol Monogr 67: 345-356.
14. Dylikowa A (1973) Geografia Polski. Krainy geograficzne (in Polish). Państw. Zakł Wyd Szkol Warszawa.
15. Elborn SA (2008) Rickenella Raithelh. In: Knudsen H, Vesterholt J (eds) Funga Nordica. Agaricoid, boletoid and cyphelloid genera. Nordsvamp, Copenhagen, pp 69-70.
16. Fraiture A (2004) Recherches mycocoenologiques dans les chênaies à charme u Pulmonario-Carpinetum et quelques autres associations forestières de haute Belgique. Thesis, Université Catholique de Louvin, Faculté des Sciences.
17. Fraiture A (2008) Mycocoenologie des forêts de Haute Belgique. Bull Soc Mycol Fr 124(3-4): 187-261.
18. Giraudel JL, Lek S (2001) A comparison of self-organizing map algorithm and some conventional statistical methods for ecological community ordination. Ecol Model 146: 329-339.
19. Gumińska B (1997) Flora Polska, Grzyby (Mycota) Basidiomycetes, Hygrophoraceae, vol 26 (in Polish). Kraków.
20. Hereźniak J (2002) Rezerwaty przyrody ziemi cze{ogonek}stochowskiej. Studium przyrodniczo-historyczne (in Polish). LOP Zarza{ogonek}d Okre{ogonek}gu w Cze{ogonek}stochowie.
21. Hereźniak J (2004) Z Jurajskim Parkiem Narodowym do Unii Europejskiej (in Polish). Cze{ogonek}stochowskie Towarzystwo Naukowe Cze{ogonek}stochowa.
22. Kalteh AM, Hjorth P, Berndtsson R (2008) Review of the self-organizing map (SOM) approach in water resources: analysis, modelling and application. Environ Model Softw 23: 835-845.
23. Kenan D, Yuzuf U (2002) Macrofungi of Aǧri Province. Turk J Bot 26: 291-295.
24. Kohonen T (1982) Self-organized formation of topologically correct feature maps. Biol Cyber 63: 201-208.
25. Kondracki J (1998) Geografia regionalna Polski (in Polish). Wydawnictwo Naukowe PWN, Warszawa.
26. Kruk A (2006) Self-organizing maps in revealing in non-obligatory riverine fish in long-term data. Hydrobiologia 553: 43-57.
27. Kruk A, Lek S, Park YS, Penczak T (2007) Fish assemblages in the large lowland Narew River system (Poland): application of the self-organizing map algorithm. Ecol Model 203: 45-61.
28. Krzakowa M, Michalak M (2007) Genetic variability of selected marginal populations of Stipa capillata L. Biol Lett 44(2): 127-135.
29. Lantieri A, Gargano ML, Venturella G (2008) The sabulicolous fungi from Sicily (southern Italy): addition and critical review. Mycotaxon 110: 151-154.
30. Lasne E, Lek S, Laffaille P (2007) Patterns in fish assemblages in the Loire floodplain: the role of hydrological connectivity and implications for conservation. Biol Conserv 139: 258-268.
31. Ławrynowicz M (1973) Grzyby wyższe makroskopowe w gra{ogonek}dach Polski środkowej [Higher macroscopic fungi in the oak-hornbeam forests of the Central Poland]. Acta Mycol 9(2): 133-204.
32. MacCune B, Mefford MS (1992) PcOrd multivariate analysis of ecological data, version 2. 0. MjM Software Design, Gleneden Beach, OR.
33. MacGeoch MA, van Rensburg BJ, Botes A (2002) The verification and application of bioindicators: a case study of dung beetles in savanna ecosystem. J Appl Ecol 39: 661-672.
34. Magura T, Tóthmérész B, Molnár T (2001) Forest edge and diversity: carabids along forest-grassland. Biodivers Conserv 10: 287-295.
35. Magura T, Elek Z, Tóthmérész B (2002) Impacts of non-native spruce reforestation on ground beetles. Eur J Soil Biol 38: 291-295.
36. Matuszkiewicz M (2001) Przewodnik do oznaczania zbiorowisk roślinnych Polski (in Polish). Vademecum Geobotanicum, Wydawnictwo Naukowe PWN, Warszawa.
37. Noori R, Karbassi A, Sabahi MS (2010) Evaluation of PCA and Gamma test techniques on ANN operation for weekly solid waste prediction. J Environ Manage 91: 767-771.
38. Olaczek R (1998) Przyroda Polski pod ochrona{ogonek} (in Polish). Zarza{ogonek}d Główny LOP, Warszawa.
39. Paavola R, Muotka T, Virtanen R, Heino J, Krevi P (2003) Are biological classification of headwater streams concordant across multiple taxonomic groups? Freshw Biol 48: 1912-1923.
40. Park YS, Céréghino R, Compin A, Lek S (2003) Applications of artificial neural networks for patterning and predicting aquatic insect species richness in running waters. Ecol Model 160: 265-280.
41. Park YS, Lek S, Scardi M, PFM Verdonschot, Jřrgensend SE (2006) Patterning exergy of benthic macroinvertebrate communities using self-organizing maps. Ecol Model 195: 105-113.
42. Penczak T (2009) Fish assemblage compositions after implementation of the IndVal method on the Narew River System. Ecol Model 220: 419-423.
43. Penczak T, Kruk A, Park YS, Lek S (2005) Patterning spatial variation in fish assemblage structures and diversity in the Pilica River system. In: Lek S, Scardi M, Verdonschot PFM, Descy JP, Park YS (eds) Modelling community structure in freshwater ecosystems. Springer, Berlin, pp 100-113.
44. Penczak T, Agostinho AA, Gomes LC, Latini JD (2009) Impacts of a reservoir on fish assemblages of small tributaries of the Corumbá River, Brazil. Riv Res Appl 25: 1013-1024.
45. Stasińska M (2005) Macromycetes of xerothermic swards of the Western Pomerania (NW) Poland. Acta Mycol 40(1): 133-140.
46. Stasińska M (2008) The state of knowledge of Macromycetes in xerothermic grasslands in Poland. Ann Univ Marie Curie-Skłodowska Lublin-Polonia sectio C 63(1/5): 71-78.
47. Szafer W (1977) Szata roślinna Polski niżowej. In: Szafer W, Zarzycki K (eds) Szata roślinna Polski. Wyd 3 Wydawnictwo Naukowe PWN, Warszawa.
48. Versanto J, Himberg J, Alhoniemi E, Parhankangas J (2000) SOM Toolbox for Matlab 5. Technical report A57. Neural Networks Research Centre, Helsinki University of Technology, Helsinki.
49. Whitehouse HE, Bayley E (2005) Vegetation patterns and biodiversity of peatland plant communities surrounding mid-boreal wetland ponds in Alberta, Canada. Can J Bot 83: 621-637.
50. Wojewoda W (1974) Macromycetes Ojcowskiego Parku Narodowego (in Polish with English summary). I. Flora. Acta Mycol 10: 181-265.
51. Wojewoda W (1975) Macromycetes Ojcowskiego Parku Narodowego. II. Charakterystyka socjologiczno-ekologiczno-geograficzna (in Polish with English summary). Acta Mycol 11: 163-209.
52. Wojewoda W (1977) Grzyby wielkoowocnikowe. In: Zabierowski K (ed) Przyroda Ojcowskiego Parku Narodowego (in Polish). Studia Naturae B 28: 161-181.
53. Wojewoda W (2003) Checlist of polish larger Basidiomycetes. Krytyczna lista wielkoowocnikowych grzybów podstawkowych Polski (in Polish with English summary). Inst Bot im W Szafera PAN Kraków.