메뉴 건너뛰기




Volumn 61, Issue 5, 2011, Pages 1133-1137

Paenibacillus tianmuensis sp. nov., isolated from soil

Author keywords

[No Author keywords available]

Indexed keywords

DIAMINOPIMELIC ACID; FATTY ACID; FRUCTOSE; GLYCOGEN; OXIDOREDUCTASE; RNA 16S;

EID: 79955838341     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.024109-0     Document Type: Article
Times cited : (23)

References (33)
  • 1
    • 54749141609 scopus 로고    scopus 로고
    • Complete rpoB gene sequencing as a suitable supplement to DNA- DNA hybridization for bacterial species and genus delineation
    • Adékambi, T., Shinnick, T. M., Raoult, D. & Drancourt, M. (2008). Complete rpoB gene sequencing as a suitable supplement to DNA- DNA hybridization for bacterial species and genus delineation. Int J Syst Evol Microbiol 58, 1807-1814.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 1807-1814
    • Adékambi, T.1    Shinnick, T.M.2    Raoult, D.3    Drancourt, M.4
  • 2
    • 0027860384 scopus 로고
    • Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus
    • Ash, C., Priest, F. G. & Collins, M. D. (1993). Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. Antonie van Leeuwenhoek 64, 253-260.
    • (1993) Antonie Van Leeuwenhoek , vol.64 , pp. 253-260
    • Ash, C.1    Priest, F.G.2    Collins, M.D.3
  • 3
    • 0003869328 scopus 로고
    • Barrow, G. I. & Feltham, R. K. A. (editors), 3rd edn. Cambridge: Cambridge University Press
    • Barrow, G. I. & Feltham, R. K. A. (editors) (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press
    • (1993) Cowan and Steel's Manual For the Identification of Medical Bacteria
  • 4
    • 0036827429 scopus 로고    scopus 로고
    • Paenibacillus turicensis sp. nov., a novel bacterium harbouring heterogeneities between 16S rRNA genes
    • Bosshard, P. P., Zbinden, R. & Altwegg, M. (2002). Paenibacillus turicensis sp. nov., a novel bacterium harbouring heterogeneities between 16S rRNA genes. Int J Syst Evol Microbiol 52, 2241-2249.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 2241-2249
    • Bosshard, P.P.1    Zbinden, R.2    Altwegg, M.3
  • 5
    • 0343193322 scopus 로고    scopus 로고
    • Paenibacillus koreensis sp. nov., a new species that produces an iturin-like antifungal compound
    • Chung, Y. R., Kim, C. H., Hwang, I. & Chun, J. (2000). Paenibacillus koreensis sp. nov., a new species that produces an iturin-like antifungal compound. Int J Syst Evol Microbiol 50, 1495-1500.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1495-1500
    • Chung, Y.R.1    Kim, C.H.2    Hwang, I.3    Chun, J.4
  • 6
    • 3042700320 scopus 로고    scopus 로고
    • Use of rpoB gene analysis for identification of nitrogen-fixing Paenibacillus species as an alternative to the 16S rRNA gene
    • da Mota, F. F., Gomes, E. A., Paiva, E., Rosado, A. S. & Seldin, L. (2004). Use of rpoB gene analysis for identification of nitrogen-fixing Paenibacillus species as an alternative to the 16S rRNA gene. Lett Appl Microbiol 39, 34-40.
    • (2004) Lett Appl Microbiol , vol.39 , pp. 34-40
    • da Mota, F.F.1    Gomes, E.A.2    Paiva, E.3    Rosado, A.S.4    Seldin, L.5
  • 7
    • 0014713693 scopus 로고
    • The quantitative measurement of DNA hybridization from renaturation rates
    • De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
    • (1970) Eur J Biochem , vol.12 , pp. 133-142
    • de Ley, J.1    Cattoir, H.2    Reynaerts, A.3
  • 8
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 9
    • 0003437299 scopus 로고    scopus 로고
    • PHYLIP (phylogeny inference package)
    • Version 3.63. Distributed by the author. Department of Genome Sciences Seattle, USA
    • Felsenstein, J. (2005). PHYLIP (phylogeny inference package) version 3.63. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
    • (2005) University of Washington
    • Felsenstein, J.1
  • 10
    • 0018099415 scopus 로고
    • Rapid method for distinction of Gram-negative from Gram-positive bacteria
    • Gregersen, T. (1978). Rapid method for distinction of Gram-negative from Gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5, 123-127
    • (1978) Eur J Appl Microbiol Biotechnol , vol.5 , pp. 123-127
    • Gregersen, T.1
  • 11
    • 27644501369 scopus 로고    scopus 로고
    • Paenibacillus macerans possesses two types of 16S rDNA copies in a genome with a length difference of twelve base pairs
    • Hamasaki, Y., Watanabe, Y., Kotoura, S., Fuchu, H., Sugiyama, M., Hashizume, K. & Morita, H. (2005). Paenibacillus macerans possesses two types of 16S rDNA copies in a genome with a length difference of twelve base pairs. Biosci Biotechnol Biochem 69, 1995-1998.
    • (2005) Biosci Biotechnol Biochem , vol.69 , pp. 1995-1998
    • Hamasaki, Y.1    Watanabe, Y.2    Kotoura, S.3    Fuchu, H.4    Sugiyama, M.5    Hashizume, K.6    Morita, H.7
  • 12
    • 0021077093 scopus 로고
    • A rapid analysis for chemical grouping of aerobic actinomycetes
    • Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
    • (1983) J Gen Appl Microbiol , vol.29 , pp. 319-322
    • Hasegawa, T.1    Takizawa, M.2    Tanida, S.3
  • 13
    • 33846145110 scopus 로고    scopus 로고
    • Isolation and identification of a Paenibacillus polymyxa strain that coproduces a novel lantibiotic and polymyxin
    • He, Z. G., Kisla, D., Zhang, L. W., Yuan, C. H., Green-Church, K. B. & Yousef, A. E. (2007). Isolation and identification of a Paenibacillus polymyxa strain that coproduces a novel lantibiotic and polymyxin. Appl Environ Microbiol 73, 168-178.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 168-178
    • He, Z.G.1    Kisla, D.2    Zhang, L.W.3    Yuan, C.H.4    Green-Church, K.B.5    Yousef, A.E.6
  • 14
    • 0015341783 scopus 로고
    • Jokipeptin, a new peptide antibiotic. I. Isolation, physico-chemical and biological characteristics
    • (Tokyo)
    • Ito, M. & Koyama, Y. (1972). Jokipeptin, a new peptide antibiotic. I. Isolation, physico-chemical and biological characteristics. J Antibiot (Tokyo) 25, 304-308.
    • (1972) J Antibiot , vol.25 , pp. 304-308
    • Ito, M.1    Koyama, Y.2
  • 15
    • 0029876296 scopus 로고    scopus 로고
    • Fusaricidin A, a new depsipeptide antibiotic produced by Bacillus polymyxa KT-8. Taxonomy, fermentation, isolation, structure elucidation and biological activity
    • (Tokyo)
    • Kajimura, Y. & Kaneda, M. (1996). Fusaricidin A, a new depsipeptide antibiotic produced by Bacillus polymyxa KT-8. Taxonomy, fermentation, isolation, structure elucidation and biological activity. J Antibiot (Tokyo) 49, 129-135.
    • (1996) J Antibiot , vol.49 , pp. 129-135
    • Kajimura, Y.1    Kaneda, M.2
  • 16
    • 0030994849 scopus 로고    scopus 로고
    • Fusaricidins B, C and D, new depsipeptide antibiotics produced by Bacillus polymyxa KT-8: Isolation, structure elucidation and biological activity
    • (Tokyo)
    • Kajimura, Y. & Kaneda, M. (1997). Fusaricidins B, C and D, new depsipeptide antibiotics produced by Bacillus polymyxa KT-8: isolation, structure elucidation and biological activity. J Antibiot (Tokyo) 50, 220-228.
    • (1997) J Antibiot , vol.50 , pp. 220-228
    • Kajimura, Y.1    Kaneda, M.2
  • 17
    • 0017646341 scopus 로고
    • The peptide antibiotics of Bacillus: Chemistry, biogenesis, and possible functions
    • Katz, E. & Demain, A. L. (1977). The peptide antibiotics of Bacillus: chemistry, biogenesis, and possible functions. Bacteriol Rev 41, 449-474
    • (1977) Bacteriol Rev , vol.41 , pp. 449-474
    • Katz, E.1    Demain, A.L.2
  • 19
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 20
    • 84963036271 scopus 로고
    • Quantitative phyletics and the evolution of anurans
    • Kluge, A. G. & Farris, J. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
    • (1969) Syst Zool , vol.18 , pp. 1-32
    • Kluge, A.G.1    Farris, J.S.2
  • 21
    • 36949064696 scopus 로고
    • Identification of Pseudomonas pyocyanea by the oxidase reaction
    • Kovács, N. (1956). Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 178, 703
    • (1956) Nature , vol.178 , pp. 703
    • Kovács, N.1
  • 22
    • 0003174184 scopus 로고
    • Preparation and analysis of DNA
    • Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York Wiley
    • Moore, D. D. & Dowhan, D. (1995). Preparation and analysis of DNA. In Current Protocols in Molecular Biology, pp. 2-11. Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York Wiley
    • (1995) Current Protocols In Molecular Biology , pp. 2-11
    • Moore, D.D.1    Dowhan, D.2
  • 23
    • 0015329544 scopus 로고
    • A New Antibiotic, Gatavalin. I. Isolation and Characterization
    • (Tokyo)
    • Nakajima, N., Chihara, S. & Koyama, Y. (1972). A new antibiotic, gatavalin. I. Isolation and characterization. J Antibiot (Tokyo) 25, 243-247.
    • (1972) J Antibiot , vol.25 , pp. 243-247
    • Nakajima, N.1    Chihara, S.2    Koyama, Y.3
  • 24
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • Nübel, U., Engelen, B., Felske, A., Snaidr, J., Wieshuber, A., Amann, R. I., Ludwig, W. & Backhaus, H. (1996). Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J Bacteriol 178, 5636-5643
    • (1996) J Bacteriol , vol.178 , pp. 5636-5643
    • Nübel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 25
    • 0028819970 scopus 로고
    • Gavaserin and saltavalin, new peptide antibiotics produced by Bacillus polymyxa
    • Pichard, B., Larue, J. P. & Thouvenot, D. (1995). Gavaserin and saltavalin, new peptide antibiotics produced by Bacillus polymyxa. FEMS Microbiol Lett 133, 215-218.
    • (1995) FEMS Microbiol Lett , vol.133 , pp. 215-218
    • Pichard, B.1    Larue, J.P.2    Thouvenot, D.3
  • 26
    • 4344571043 scopus 로고    scopus 로고
    • Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures
    • Roux, V. & Raoult, D. (2004). Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures. Int J Syst Evol Microbiol 54, 1049-1054.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1049-1054
    • Roux, V.1    Raoult, D.2
  • 27
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 28
    • 0030937122 scopus 로고    scopus 로고
    • Emended description of Paenibacillus amylolyticus and description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov
    • Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, K. (1997). Emended description of Paenibacillus amylolyticus and description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov. Int J Syst Bacteriol 47, 299-306.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 299-306
    • Shida, O.1    Takagi, H.2    Kadowaki, K.3    Nakamura, L.K.4    Komagata, K.5
  • 29
    • 0000612080 scopus 로고
    • Phenotypic characterization
    • Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
    • Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
    • (1994) Methods For General and Molecular Bacteriology, Pp. 607-654
    • Smibert, R.M.1    Krieg, N.R.2
  • 30
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 31
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 32
    • 0000770675 scopus 로고
    • International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
    • Other Authors
    • Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
    • (1987) Int J Syst Bacteriol , vol.37 , pp. 463-464
    • Wayne, L.G.1    Brenner, D.J.2    Colwell, R.R.3    Grimont, P.A.D.4    Kandler, O.5    Krichevsky, M.I.6    Moore, L.H.7    Moore, W.E.C.8    Murray, R.G.E.9
  • 33
    • 58949083249 scopus 로고    scopus 로고
    • Taxonomic study of a chromomycin-producing strain and reclassification of Streptomyces cavourensis subsp. washingtonensis as a later synonym of Streptomyces griseus
    • Wu, X., Wen, Y., Qian, C., Li, O., Fang, H. & Chen, W. (2008). Taxonomic study of a chromomycin-producing strain and reclassification of Streptomyces cavourensis subsp. washingtonensis as a later synonym of Streptomyces griseus. Int J Syst Evol Microbiol 58, 2783-2787.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2783-2787
    • Wu, X.1    Wen, Y.2    Qian, C.3    Li, O.4    Fang, H.5    Chen, W.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.