The MEMPACK alpha-helical transmembrane protein structure prediction server

Bioinformatics

Volumn 27, Issue 10, 2011, Pages 1438-1439

  Nugent, Timothy ^a   Ward, Sean ^a   Jones, David T ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL PROTEIN; ARCHAERHODOPSIN PROTEIN, ARCHAEA; MEMBRANE PROTEIN;

ALGORITHM; ARTICLE; ARTIFICIAL INTELLIGENCE; CHEMISTRY; PROTEIN SECONDARY STRUCTURE;

ALGORITHMS; ARCHAEAL PROTEINS; ARTIFICIAL INTELLIGENCE; MEMBRANE PROTEINS; PROTEIN STRUCTURE, SECONDARY;

EID: 79955774472     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr096     Document Type: Article

References (6)

1. Altschul,S.F. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
2. Jones,D.T. (2007) Improving the accuracy of transmembrane protein topology prediction using evolutionary information. Bioinformatics, 23, 538-544.
3. Möller,S. et al. (2000) A collection of well characterised integral membrane proteins. Bioinformatics, 16, 1159-1160.
4. Nugent,T. and Jones,D.T. (2009a) Transmembrane protein topology prediction using support vector machines. BMC Bioinformatics, 10, 159.
5. Nugent,T. and Jones,D.T. (2009b) Predicting transmembrane helix packing arrangements using residue contacts and a force-directed algorithm. PLoS Comput. Biol., 6, e1000714.
6. Sansom,M.S. et al. (2008) Coarse-grained simulation: a high-throughput computational approach to membrane proteins. Biochem Soc. Trans., 36, 27-32.