메뉴 건너뛰기




Volumn 12, Issue 3, 2011, Pages 288-300

Case studies in reproducibility

Author keywords

Reproducible research; Software; Statistical analyzes; Sweave

Indexed keywords

ARTICLE; BIOLOGY; METHODOLOGY; REPRODUCIBILITY; RESEARCH; STATISTICAL MODEL;

EID: 79955753954     PISSN: 14675463     EISSN: 14774054     Source Type: Journal    
DOI: 10.1093/bib/bbq084     Document Type: Article
Times cited : (61)

References (27)
  • 1
    • 58649108073 scopus 로고    scopus 로고
    • Partner wealth predicts self-reported orgasm frequency in a sample of chinese women
    • Pollet TV, Nettle D. Partner wealth predicts self-reported orgasm frequency in a sample of chinese women. Evol Hum Behav 2009;30:146-51.
    • (2009) Evol Hum Behav , vol.30 , pp. 146-151
    • Pollet, T.V.1    Nettle, D.2
  • 2
    • 76749150125 scopus 로고    scopus 로고
    • A re-evaluation of the statistical model in Pollet and Nettle 2009
    • Herberich E, Hothorn T, Nettle D, et al. A re-evaluation of the statistical model in Pollet and Nettle 2009. Evol Hum Behav 2010;31(2):150-51.
    • (2010) Evol Hum Behav , vol.31 , Issue.2 , pp. 150-151
    • Herberich, E.1    Hothorn, T.2    Nettle, D.3
  • 3
    • 0032560125 scopus 로고    scopus 로고
    • Global-scale temperature patterns and climate forcing over the past six centuries
    • Mann ME, Bradley RS, Hughes MK. Global-scale temperature patterns and climate forcing over the past six centuries. Nature 1998;392:779-87.
    • (1998) Nature , vol.392 , pp. 779-787
    • Mann, M.E.1    Bradley, R.S.2    Hughes, M.K.3
  • 4
    • 0347541276 scopus 로고    scopus 로고
    • proxy data base and northern hemispheric average temperature series
    • Corrections to the Mann
    • McIntyre S, McKitrick R. Corrections to the Mann et. al. (1998) proxy data base and northern hemispheric average temperature series. Energy & Environment 2003;14(6): 751-71.
    • (1998) Energy & Environment 2003 , vol.14 , Issue.6 , pp. 751-771
    • McIntyre, S.1    McKitrick, R.2
  • 5
    • 13944268782 scopus 로고    scopus 로고
    • The M&M critique of the MBH98 Northern Hemisphere climate index: Update and implications
    • McIntyre S, McKitrick R. The M&M critique of the MBH98 Northern Hemisphere climate index: Update and implications. Energy Environ 2005;16(1):69-100.
    • (2005) Energy Environ , vol.16 , Issue.1 , pp. 69-100
    • McIntyre, S.1    McKitrick, R.2
  • 6
    • 59149088407 scopus 로고    scopus 로고
    • Repeatability of published microarray gene expression analyses
    • Ioannidis JPA, Allison DB, Ball CA, et al. Repeatability of published microarray gene expression analyses. Nat Genet 2009;41(2):149-55.
    • (2009) Nat Genet , vol.41 , Issue.2 , pp. 149-155
    • Ioannidis, J.P.A.1    Allison, D.B.2    Ball, C.A.3
  • 7
    • 77951163222 scopus 로고    scopus 로고
    • Deriving chemosensitivity from cell lines: Forensic bioinformatics and reproducible research in high-throughput biology
    • Baggerly KA, Coombes KR. Deriving chemosensitivity from cell lines: Forensic bioinformatics and reproducible research in high-throughput biology. Ann Appl Stat 2009; 3(4):1309-34.
    • (2009) Ann Appl Stat , vol.3 , Issue.4 , pp. 1309-1334
    • Baggerly, K.A.1    Coombes, K.R.2
  • 8
    • 41949101394 scopus 로고    scopus 로고
    • Run Batch Effects Potentially Compromise the Usefulness of Genomic Signatures for Ovarian Cancer
    • Baggerly KA, Coombes KR, Neeley ES. Run Batch Effects Potentially Compromise the Usefulness of Genomic Signatures for Ovarian Cancer. J Clin Oncol 2008;26(7): 1186-87.
    • (2008) J Clin Oncol , vol.26 , Issue.7 , pp. 1186-1187
    • Baggerly, K.A.1    Coombes, K.R.2    Neeley, E.S.3
  • 9
    • 33947512381 scopus 로고    scopus 로고
    • An Integrated Genomic-Based Approach to Individualized Treatment of Patients With Advanced-Stage Ovarian Cancer
    • Dressman HK, Berchuck A, Chan G, et al. An Integrated Genomic-Based Approach to Individualized Treatment of Patients With Advanced-Stage Ovarian Cancer. J Clin Oncol 2007;25(5):517-25.
    • (2007) J Clin Oncol , vol.25 , Issue.5 , pp. 517-525
    • Dressman, H.K.1    Berchuck, A.2    Chan, G.3
  • 10
    • 79955763421 scopus 로고    scopus 로고
    • Reproducible research concepts and tools for cancer bioinformatics
    • Ochs MF, Casagrande JT, Davuluri RV, (eds). New York: Springer
    • Carey VJ, Stodden V. Reproducible research concepts and tools for cancer bioinformatics. In: Ochs MF, Casagrande JT, Davuluri RV, (eds). Biomedical Informatics for Cancer Research. New York: Springer, 2010;149-75.
    • (2010) Biomedical Informatics for Cancer Research , pp. 149-175
    • Carey, V.J.1    Stodden, V.2
  • 11
    • 77955381532 scopus 로고    scopus 로고
    • Reproducible research and the substantive context
    • With discussion
    • Keiding N. Reproducible research and the substantive context. Biostatistics 2010;11(3):376-78. With discussion.
    • (2010) Biostatistics , vol.11 , Issue.3 , pp. 376-378
    • Keiding, N.1
  • 12
    • 63149197681 scopus 로고    scopus 로고
    • Technical Report 2001031101, Department of Statistics Papers, University of California, Los Angeles (29 August 2010, date last accessed)
    • de Leeuw J. Reproducible research: The bottom line. Technical Report 2001031101, Department of Statistics Papers, University of California, Los Angeles, 2001. http://repositories.cdlib.org/uclastat/papers/2001031101 (29 August 2010, date last accessed).
    • (2001) Reproducible research: The bottom line
    • de Leeuw, J.1
  • 13
    • 0002649812 scopus 로고
    • Wavelab and reproducible research
    • Antoniadis A, (ed). New York: Springer
    • Buckheit JB, Donoho DL. Wavelab and reproducible research. In: Antoniadis A, (ed). Wavelets and Statistics. New York: Springer, 1995.
    • (1995) Wavelets and Statistics
    • Buckheit, J.B.1    Donoho, D.L.2
  • 15
    • 20444458948 scopus 로고    scopus 로고
    • Reproducible statistical research
    • Leisch F, Rossini AJ. Reproducible statistical research. Chance 2003;16(2):46-50.
    • (2003) Chance , vol.16 , Issue.2 , pp. 46-50
    • Leisch, F.1    Rossini, A.J.2
  • 16
    • 34147207728 scopus 로고    scopus 로고
    • Temple Lang D Statistical analyses and reproducible research
    • Gentleman R, Temple Lang D. Statistical analyses and reproducible research. J Comput Graph Stat 2007;16(1):1-23.
    • (2007) J Comput Graph Stat , vol.16 , Issue.1 , pp. 1-23
    • Gentleman, R.1
  • 17
    • 70350702464 scopus 로고    scopus 로고
    • Biometrical journal and reproducible research
    • Hothorn T, Held L, Friede T. Biometrical journal and reproducible research. Biometrical Journal 2009;51(4):553-5.
    • (2009) Biometrical Journal , vol.51 , Issue.4 , pp. 553-555
    • Hothorn, T.1    Held, L.2    Friede, T.3
  • 18
    • 0033659169 scopus 로고    scopus 로고
    • Association studies of candidate genes in bipolar disorders
    • Heiden A, Schüssler P, Itzlinger U, et al. Association studies of candidate genes in bipolar disorders. Neuropsychobiology 2000;42(suppl 1):18-21.
    • (2000) Neuropsychobiology , vol.42 , Issue.SUPPL. 1 , pp. 18-21
    • Heiden, A.1    Schüssler, P.2    Itzlinger, U.3
  • 19
    • 2142644516 scopus 로고    scopus 로고
    • Guided self-help versus cognitive-behavioral group therapy in the treatment of bulimia nervosa
    • Bailer U, de Zwaan M, Leisch F, et al. Guided self-help versus cognitive-behavioral group therapy in the treatment of bulimia nervosa. J Eat Disorders 2004;35(4):522-37.
    • (2004) J Eat Disorders , vol.35 , Issue.4 , pp. 522-537
    • Bailer, U.1    de Zwaan, M.2    Leisch, F.3
  • 20
    • 13244298225 scopus 로고    scopus 로고
    • Overdispersed logistic regression for SAGE: Modelling multiple groups and covariates
    • Baggerly K, Deng L, Morris J, et al. Overdispersed logistic regression for SAGE: Modelling multiple groups and covariates. BMC Bioinformatics 2004;5(1):144.
    • (2004) BMC Bioinformatics , vol.5 , Issue.1 , pp. 144
    • Baggerly, K.1    Deng, L.2    Morris, J.3
  • 21
    • 37249041630 scopus 로고    scopus 로고
    • Statistical analysis and significance testing of serial analysis of gene expression data using a poisson mixture model
    • Zuyderduyn S. Statistical analysis and significance testing of serial analysis of gene expression data using a poisson mixture model. BMC Bioinformatics 2007;8(1):282.
    • (2007) BMC Bioinformatics , vol.8 , Issue.1 , pp. 282
    • Zuyderduyn, S.1
  • 22
    • 11244333649 scopus 로고    scopus 로고
    • Flex Mix: A general framework for finite mixture models and latent class regression in R
    • Leisch F. Flex Mix: A general framework for finite mixture models and latent class regression in R. J Stat Softw 2004; 11(8):1-18.
    • (2004) J Stat Softw , vol.11 , Issue.8 , pp. 1-18
    • Leisch, F.1
  • 23
    • 77951964158 scopus 로고    scopus 로고
    • Small-sample precision of roc-related estimates
    • Hanczar B, Hua J, Sima C, et al. Small-sample precision of roc-related estimates. Bioinformatics 2010;26(6):822-30.
    • (2010) Bioinformatics , vol.26 , Issue.6 , pp. 822-830
    • Hanczar, B.1    Hua, J.2    Sima, C.3
  • 24
    • 77951955992 scopus 로고    scopus 로고
    • Non-linear classification for on-the-fly fractional mass filtering and targeted precursor fragmentation in mass spectrometry experiments
    • Kirchner M, Timm W, Fong P, et al. Non-linear classification for on-the-fly fractional mass filtering and targeted precursor fragmentation in mass spectrometry experiments. Bioinformatics 2010;26(6):791-97.
    • (2010) Bioinformatics , vol.26 , Issue.6 , pp. 791-797
    • Kirchner, M.1    Timm, W.2    Fong, P.3
  • 25
    • 0242529706 scopus 로고    scopus 로고
    • Sweave: Dynamic generation of statistical reports using literate data analysis
    • Härdle W, Rönz B, (eds). Heidelberg: Physica
    • Leisch F. Sweave: Dynamic generation of statistical reports using literate data analysis. In: Härdle W, Rönz B, (eds). Compstat 2002-Proceedings in Computational Statistics. Heidelberg: Physica, 2002;575-80.
    • (2002) Compstat 2002-Proceedings in Computational Statistics , pp. 575-580
    • Leisch, F.1
  • 26
    • 79955782375 scopus 로고    scopus 로고
    • USA: University of Virginia
    • Ramsey N. Noweb man page. USA: University of Virginia, 1998.
    • (1998) Noweb man page
    • Ramsey, N.1
  • 27
    • 79951480123 scopus 로고    scopus 로고
    • R Development Core Team. Vienna, Austria: R foundation for statistical Computing, (15 October 2010, date last accessed)
    • R Development Core Team. R:ALanguage and Environment for Statistical Computing. Vienna, Austria: R foundation for statistical Computing, 2010 (15 October 2010, date last accessed).
    • (2010) R:ALanguage and Environment for Statistical Computing


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.