Self-incompatibility: Smi silences through a novel sRNA pathway

Trends in Plant Science

Volumn 16, Issue 5, 2011, Pages 238-241

  Finnegan, E Jean ^a   Liang, Dacheng ^a   Wang, Ming Bo ^a  

^a CSIRO   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

PLANT RNA; PROTEIN KINASE; S RECEPTOR KINASE; S-RECEPTOR KINASE; SMALL UNTRANSLATED RNA; SP11 PROTEIN, BRASSICA; VEGETABLE PROTEIN;

ALLELE; BRASSICACEAE; DNA METHYLATION; DOMINANT GENE; FLOWER; GENE EXPRESSION REGULATION; GENE SILENCING; GENETICS; HAPLOTYPE; HETEROZYGOTE; METABOLISM; PHENOTYPE; PHYSIOLOGY; PLANT INFERTILITY; POLLEN; POLLINATION; PROMOTER REGION; REPRODUCTION; REVIEW;

ALLELES; BRASSICACEAE; DNA METHYLATION; FLOWERS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENE SILENCING; GENES, DOMINANT; HAPLOTYPES; HETEROZYGOTE; PHENOTYPE; PLANT INFERTILITY; PLANT PROTEINS; POLLEN; POLLINATION; PROMOTER REGIONS, GENETIC; PROTEIN KINASES; REPRODUCTION; RNA, PLANT; RNA, SMALL UNTRANSLATED;

BRASSICACEAE;

EID: 79955743363     PISSN: 13601385     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tplants.2011.01.002     Document Type: Review

References (34)

1. Tarutani Y., et al. Trans-acting small RNA determines dominance relationships in Brassica self-incompatibility. Nature 2010, 466:983-986.
2. Silva N.F., Goring D.R. Mechanisms of self-incompatibility in flowering plants. Cell. Mol. Life Sci. 2001, 58:1988-2007.
3. Hiscock S.J., Tabah D.A. The different mechanisms of sporophytic self-incompatibility in flowering plants. Philos. Trans. R. Soc. Lond. B: Biol. Sci. 2003, 358:1037-1045.
4. Franklin-Tong V.E., Franklin F.C.H. Gametophytic self-incompatibility inhibits pollen tube growth using different mechanisms. Trends Plant Sci. 2003, 8:598-605.
5. Ivanov R. When no means no: guide to Brassicaceae self-incompatibility. Trends Plant Sci. 2010, 15:387-394.
6. Takayama S., et al. Direct ligand-receptor complex interaction controls Brassica self-incompatibility. Nature 2001, 413:534-538.
7. Kachroo A., et al. Allele-specific receptor-ligand interactions in Brassica self-incompatibility. Science 2001, 293:1824-1826.
8. Shiba H., et al. The dominance of alleles controlling self-incompatibility in Brassica pollen is controlled at the RNA level. Plant Cell 2002, 14:491-504.
9. Shiba H., et al. Dominance relationships between self-incompatibility alleles controlled by DNA methylation. Nat. Genet. 2006, 38:297-299.
10. Wu L., et al. DNA methylation mediated by a microRNA pathway. Mol. Cell 2010, 38:465-475.
11. Daxinger L., et al. A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation. EMBO J. 2009, 28:48-57.
12. Chu Y., et al. Involvement of argonaute proteins in gene silencing and activation by RNAs complementary to a non-coding transcript at the progesterone receptor promoter. Nucl. Acids Res. 2010, 38:7736-7748.
13. Kim D.H., et al. MicroRNA-directed transcriptional gene silencing in mammalian cells. Proc. Natl. Acad. Sci. U.S.A. 2008, 105:16230-16235.
14. Okano Y., et al. Small interfering RNA (siRNA) targeting of endogenous promoters induces DNA methylation, but not necessarily gene silencing, in rice. Plant J. 2008, 53:65-77.
15. Mattick J. RNA regulation of epigenetic processes. BioEssays 2009, 31:51-59.
16. Schwab R., et al. Specific effects of microRNAs on the plant transcriptome. Devel. Cell 2005, 8:517-527.
17. Vazquez F., et al. Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol. Cell 2004, 16:69-79.
18. Allen E., et al. microRNA-directed phasing during Trans-acting siRNA biogenesis in plants. Cell 2005, 121:207-221.
19. Han J., et al. Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:12422-12427.
20. Wierzbicki A.T., et al. Noncoding transcription by RNA polymerase PolIVb/PolV mediates transcriptional gene silencing of overlapping and adjacent genes. Cell 2008, 135:635-648.
21. Napoli S., et al. Promoter-specific transcriptional interference and c-myc gene silencing by siRNAs in human cells. EMBO J. 2009, 28:1708-1719.
22. Hawkins P.G., et al. Promoter targeted small RNAs induce long-term transcriptional gene silencing in humans cells. Nucl. Acids Res. 2009, 37:2984-2995.
23. Bao N., et al. MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome. Devel. Cell 2004, 7:653-662.
24. Khraiwesh B., et al. Transcriptional control of gene expression by microRNAs. Cell 2010, 140:111-122.
25. Talmor-Neiman M., et al. Identification of trans-acting siRNAs in moss and an RNA dependent RNA polymerase required for their biogenesis. Plant J. 2006, 48:511-521.
26. Axtell M.J., et al. A two-hit trigger for siRNA biogenesis in plants. Cell 2006, 127:565-577.
27. Howell M.D., et al. Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell 2007, 19:926-942.
28. Luo Q.-J., et al. Evidence for antisense transcription associated with microRNA target mRNAs in Arabidopsis. PLoS Genet. 2009, 5:e1000457.
29. Lu C., et al. Elucidation of the small RNA component of the transcriptome. Science 2005, 309:1567-1569.
30. Arteaga-Vazquez M.A., Chandler V.L. Paramutation in maize: RNA mediated transgenerational gene silencing Current Opin. Genes Dev. 2010, 20:156-163.
31. Bi Y.M., et al. Transformation of Arabidopsis with a Brassica SLG/SRK region and ARC1 gene is not sufficient to transfer the self-incompatibility phenotype Mol. Gen. Genet. 2000, 263:648-654.
32. Sha K. A mechanistic view of genomic imprinting. Annu. Rev. Genomics Hum. Genet. 2008, 9:197-216.
33. Keverne B. Monoallelic gene expression and mammalian evolution. BioEssays 2009, 31:1318-1326.
34. Goring D.R., Indriolo E. How plants avoid incest. Nature 2010, 466:926-928.