An intraspecific genetic map of water yam (Dioscorea alata L.) based on AFLP markers and QTL analysis for anthracnose resistance

Euphytica

Volumn 179, Issue 3, 2011, Pages 405-416

  Petro, D ^a   Onyeka, T J ^a   Etienne, S ^a   Rubens, S ^a  

^a CEMAGREF   (France)

Author keywords

Anthracnose; Dioscorea alata; Genetic mapping; QTLs (quantitative trait loci); Yam

Indexed keywords

COLLETOTRICHUM; DIOSCOREA ALATA; GLOMERELLA CINGULATA;

EID: 79955703043     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-010-0338-1     Document Type: Article

References (54)

1. Abang MM, Mignouna HD, Green KR, Asiedu R (2001) Development of a tissue culture-based whole plant method for assessing anthracnose disease reactions in water yam (Dioscorea alata L.). In: Proceedings of the 5th biennial conference of the African Crop Science Society, 21-26 Oct 2001. Lagos, African Crop Science Society, Nigeria, 111 (abstract).
2. Abang MM, Hoffmann P, Winter S, Green KR, Wolf GA (2004) Vegetative compatibility among isolates of Colletotrichum gloeosporioides from yam (Dioscorea spp.) in Nigeria. J Phytopathol 152: 21-27.
3. Abang MM, Fagbola O, Smalla K, Winter S (2005) Two genetically distinct populations of Colletotrichum causing anthracnose disease of yam (Dioscorea spp.). J Phytopathol 153: 137-142.
4. Abraham K, Nair PG (1991) Polyploidy and sterility in relation to sex in Dioscorea alata L. Genetica 83: 93-97.
5. AlonsoBlanco C, Peters AJM, Korneef M, Lister C, Dean C, van den Bosch N, Pot J, Kuiper MTR (1998) Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsisthaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population. Plant J 14: 259-271.
6. Ano G, Anaïs G, Chidiac A (2002) Création et utilisation de variétés résistantes aux maladies, éléments essentiels de la diversification agricole en Guadeloupe. Phytoma 551: 36-37.
7. Ano G, Gélabale J, Marival P (2005) L'igname D. alata, la genetique et l'anthracnose. Phytoma 584: 36-39.
8. Arnau G, Némorin A, Maledon E, Abraham K (2009) Revision of ploidy status of Dioscorea alata L. (Dioscoreaceae) by cytogenetic and microsatellite segregation analysis. Theor Appl Genet 118: 1239-1249.
9. Arru L, Francia E, Pecchioni N (2003) Isolate-specific QTLs of resistance to leaf stripe (Pyrenophora graminea) in the 'Steptoe' × 'Morex' spring barley cross. Theor Appl Genet 106: 668-675.
10. Bert PF, Charmet G, Sourdille P, Hayward MD, Balfourier F (1999) A high-density molecular map for ryegrass (Lolium perenne) using AFLP markers. Theor Appl Genet 99: 445-452.
11. Bousalem M, Arnau G, Hochu I, Arnolin R, Viader V, Santoni S, David J (2006) Microsatellite segregation analysis and cytogenetic evidence for tetrasomic inheritance in the American yam Dioscorea trifida and a new basic chromosome number in the Dioscoreae. Theor Appl Genet 113: 439-451.
12. Burt A, Bell G, Harvey PH (1991) Sex differences in recombination. J Ecol Biol 4: 259-277.
13. Capo-chichi LJA, Morton CM, Weaver DB (2004) An intraspecific genetic map of velvet bean (Mucana sp.) based on AFLP markers. Theor Appl Genet 108: 814-821.
14. Castiglioni P, Ajmone-Marsan P, van Wijk R, Motto M (1999) AFLP markers in a molecular linkage map of maize: codominant scoring and linkage group distribution. Theor Appl Genet 99: 425-431.
15. Daïnou O, Agbangla C, Berthaud J, Tostain S (2002) Le nombre chromosomique de base des espèces de Dioscorea constituant la Section Enantiophyllum pourrait être égal à x = 20. Quelques éléments de preuves. Annales des Sciences Agronomiques du Bénin 3: 21-43.
16. Darvishzadeh R, Poormohammad Kiani S, Dechamp-Guillaume G, Gentzbittel L, Sarrafi A (2007) Quantitative trait loci associated with isolate specific and isolate non-specific partial resistance to Phomamacdonaldii in sunflower. Plant Pathol 56: 855-861.
17. FAO (2008) FAO production STAT.
18. Frézal L (2005) Etude de la diversité génétique de Colletotrichum gloeosporioides, responsable de l'anthracnosse de l'igname alata (Dioscorea alata) en Guadeloupe. PhD Thesis, Université de Paris-Sud, Paris, France.
19. Frézal L, Jacqua G, Neema C (2003) Etude de la diversité génétique de Colletotrichum gloeosporioides, agent causal de l'anthracnose de l'igname blanche en Guadeloupe. In: Abstracts of the 7th international conference on plant diseases, 3-5 Dec 2003, Tours, France. Association Française de Protection des Plantes (AFPP), Paris.
20. Gamiette F, Bakry F, Ano G (1999) Ploidy determination of some yam species (Dioscorea spp.) by flow cytometry and conventional chromosome counting. Genet Resour Crop Evol 46: 19-27.
21. Hochu I, Santoni S, Boussalem M (2006) Isolation, characterization and cross-species amplification of microsatellite DNA loci in the tropical American yam Dioscorea trifida. Mol Ecol Notes 6: 137-140.
22. Hulbert SH, Ilot TW, Legg EJ, Lincoln SE, Lander ES, Michelmore RW (1988) Genetic analysis of the fungus, Bremia lactucae, using restriction fragment length polymorphism. Genetics 120: 947-958.
23. Jacqua G, Frézal L, Neema C (2005) Evaluation de la sensibilité de génotypes d'ignames à l'anthracnose (Colletotrichum gloeosporioides): test in vitro sur feuilles isolées. In: Huyez-Levrat M (ed) Methodes d'appréciation du comportement variétal vis-a-vis des bioagresseurs. Le Cahier des Techniques de l'Inra, INRA, Paris, pp 139-142.
24. Jenczewski E, Ghérardi M, Bonnin J, Prosperi JM, Olivieri I, Huguet T (1997) Insight on segregation distortions in two intraspecific crosses between annual species of Medicago (Leguminosae). Theor Appl Genet 94: 682-691.
25. Ky CL, Barre P, Lorieux M, Trouslot P, Akaffou S, Louarn J, Charrier A, Hamon S (2000) Interspecific genetic linkage map, segregation distortion and genetic conversion in coffee (Coffea sp.). Theor Appl Genet 101: 669-676.
26. Lashermes P, Combes MC, Prakash NS, Trouslot P, Lorieux M, Charrier A (2001) Genetic linkage map of Coffea canephora: effect of segregation distortion and analysis of recombination rate in male and female meioses. Genome 44: 589-596.
27. Martin FW, Ortiz S (1963) Chromosome numbers and behaviour in some species of Dioscorea. Cytologia 28: 603-607.
28. Martin FW, Ortiz S (1966) New chromosome numbers in some Dioscorea species. Cytologia 31: 105-107.
29. McDonald FD, Alleyne AT, Ogarro LW, Delauney AJ (1998) Yam anthracnose in the English-speaking islands of the Eastern Caribbean-successes and research advances in disease management. Trop Agric 75: 53-57.
30. Mignouna HD, Abang MM, Green KR, Asiedu R (2001) Inheritance of resistance in water yam (Dioscorea alata) to anthracnose (Colletotrichum gloeosporioides). Theor Appl Genet 103: 52-55.
31. Mignouna HD, Mank RA, Ellis THN, van den Bosch N, Asiedu R, Abang MM, Peleman J (2002a) A genetic linkage map of Guinea yam (Dioscorea rotundata Poir.) based on AFLP markers. Theor Appl Genet 105: 716-725.
32. Mignouna HD, Mank RA, Ellis THN, van den Bosch N, Asiedu R, Abang MM, Peleman J (2002b) A genetic linkage map of water yam (Dioscorea alata L.) based on AFLP markers and QTL analysis for anthracnose resistance. Theor Appl Genet 105: 726-735.
33. Nilsson NO, Hallden C, Hansen M, Hjerdin A, Säll T (1997) Comparing the distribution of RAPD and RFLP markers in a high density linkage map of sugar beet. Genome 40: 644-651.
34. Onyeka TJ, Pétro D, Jacqua G, Etienne S, Rubens S (2005) Assessment of partial resistance to anthracnose in water yam (D. alata) using tissue culture-generated whole plant. In: Breeding for Plant resistance to pests and diseases. IOBC WPRS Bull 28: 51-57.
35. Onyeka TJ, Pétro D, Ano G, Etienne S, Rubens S (2006a) Resistance in water yam (Dioscorea alata) cultivars in the French West Indies to anthracnose disease based on tissue culture-derived whole-plant assay. Plant Pathol 55: 671-678.
36. Onyeka TJ, Pétro D, Etienne S, Jacqua G, Ano G (2006b) Optimizing controlled environment assessment of levels of resistance to yam anthracnose disease using tissue culture-derived whole plants. J Phytopathol 154: 286-292.
37. Pearl HM, Nagai C, Moore PH, Steiger DL, Osgood RV, Ming R (2004) Construction of a genetic map for Arabica coffee. Theor Appl Genet 108: 829-835.
38. Perchepied L, Dogimont C, Pitrat M (2005) Strain-specific and recessive QTLs involved in the control of partial resistance to Fusarium oxysporum f. sp. melonis race 1. 2 in a recombinant inbred line population of melon. Theor Appl Genet 111: 65-74.
39. Qi X, Stam P, Lindhout P (1998) Use of locus-specific AFLP markers to construct a high-density molecular map in barley. Theor Appl Genet 96: 376-384.
40. Qi X, Jiang G, Ghen W, Niks NE, Stam P, Lindhout P (1999) Isolate-specific QTLs for partial resistance to Puccinia hordei in barley. Theor Appl Genet 99: 877-884.
41. Ramachadran K (1968) Cytological studies in Dioscoreacea. Cytologia 33: 401-410.
42. Saghai Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci USA 81: 8014-8018.
43. SAS Institute Inc (1989) SAS system for Windows, version 6·12. SAS Institute, Cary.
44. Scarcelli N, Daïnou O, Agbangla C, Tostain S, Pham J-L (2005) Segregation patterns of isozyme loci and microsatellite markers show the diploidy of African yam Dioscorea rotundata (2n = 40). Theor Appl Genet 111: 226-232.
45. Simons SA, Green KR (1994) Quantitative methods for assessing the severity of anthracnose on yam (Dioscorea alata). Trop Sci 34: 216-224.
46. Talukder ZI, Tharreau D, Price AH (2004) Quantitative trait loci analysis suggests that partial resistance to rice blast is mostly determined by race-specific interactions. New Physiol 162: 197-209.
47. Terauchi R, Kahl G (1999) Mapping of the Dioscorea tokoro genome: AFLP markers linked to sex. Genome 42: 752-762.
48. Thoquet P, Ghérardi M, Journet EP, Kereszt A, Ané JM, Prosperi JM et al (2002) The molecular genetic linkage map of the model legume Medicago truncatula: an essential tool for comparative legume genomics and the isolation of agronomically genes. BMC Plant Biol 2: 1.
49. Toribio JA, Jacqua G (1978) Traitements fongicides contre l'anthracnose de l'igname. Nouvelles Agronomiques des Antilles et de la Guyane (Guadeloupe) 4: 147-152.
50. ® 5 software for the mapping of quantitative trait loci in experimental populations. Kyazma B. V., Wageningen.
51. van Ooijen JW (2006) JoinMap 4 software for the calculation of genetic linkage maps in experimental populations. Kyazma B. V., Wageningen.
52. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Freijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414.
53. Winch JE, Newhook FJ, Jackson GVH, Cole JS (1984) Studies of Colletotrichum gloeosporioides disease on yam, Dioscorea alata, in the Solomon Islands. Plant Pathol 33: 467-477.
54. Zoundjihekpon J, Hamon S, Tio-Touré B, Hamon P (1994) First controlled progenies checked by isozymic markers in cultivated yams Dioscorea cayenensis-rotundata. Theor Appl Genet 88: 1011-1016.