The α-glucuronidase Agu1 from Schizophyllum commune is a member of a novel glycoside hydrolase family (GH115)

Applied Microbiology and Biotechnology

Volumn 90, Issue 4, 2011, Pages 1323-1332

  Chong, Sun Li ^a   Battaglia, Evy ^b   Coutinho, Pedro M ^c   Henrissat, Bernard ^c   Tenkanen, Maija ^a   De Vries, Ronald P ^b,d  

^a UNIVERSITY OF HELSINKI   (Finland)

^b UTRECHT UNIVERSITY   (Netherlands)

^c AIX MARSEILLE UNIVERSITY   (France)

^d CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

Author keywords

Glucuronidase; Gene expression; GH115; Schizophyllum commune; Xylan degradation

Indexed keywords

ASPERGILLUS ORYZAE; CANDIDATE GENES; ENCODING GENES; EXPRESSION ANALYSIS; GH115; GLUCURONIDASE; GLYCOSIDE HYDROLASES; HYPOCREA; OVER-EXPRESSION; PHYLOGENETIC ANALYSIS; PLANT BIOMASS; PUTATIVE GENES; SCHIZOPHYLLUM COMMUNE; SEQUENCE ANALYSIS; THREE-BRANCH; TRANSFORMANTS; XYLAN DEGRADATION; XYLANASES;

DEGRADATION; ENCODING (SYMBOLS); ENZYMES; FUNGI; GENE ENCODING; HYDROLASES; OLIGOMERS; SUGARS;

GENE EXPRESSION;

ALPHA GLUCURONIDASE; COMPLEMENTARY DNA; FUNGAL DNA; FUNGAL ENZYME; GLYCOSIDASE; GLYCOSIDE HYDROLASE 115; OLIGOSACCHARIDE; UNCLASSIFIED DRUG; XYLAN ENDO 1,3 BETA XYLOSIDASE;

CARBOXYLIC ACID; ENZYME ACTIVITY; GENE EXPRESSION; HYDROLYSIS; MOLECULAR ANALYSIS; MUSHROOM; PHYLOGENETICS; PHYTOMASS; POLYSACCHARIDE;

ARTICLE; ASPERGILLUS ORYZAE; CONTROLLED STUDY; DNA ISOLATION; FUNGAL GENE; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENE SEQUENCE; HYPOCREA JECORINA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROTEIN ANALYSIS; RNA ISOLATION; SCHIZOPHYLLUM COMMUNE; SEQUENCE ANALYSIS;

FUNGAL PROTEINS; GLYCOSIDE HYDROLASES; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; SCHIZOPHYLLUM;

ASPERGILLUS ORYZAE; FUNGI; HYPOCREA JECORINA; PROKARYOTA; SCHIZOPHYLLUM COMMUNE;

EID: 79955557813     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-011-3157-y     Document Type: Article

References (40)

1. GO Aspinall 1980 Chemistry of cell wall polysaccharides Biochem Plants 3 473 500 1:CAS:528:DyaL38Xot1KjsQ%3D%3D
2. P Biely CR MacKenzie H Schneider 1988 Production of acetyl xylan esterase by Trichoderma reesei and Schizophyllum commune Can J Microbiol 34 767 772 10.1139/m88-130 1:CAS:528:DyaL1cXlvVKqt74%3D
3. P Biely RP de Vries M Vrsanska J Visser 2000 Inverting character of α-glucuronidase A from Aspergillus tubingensis Biochim Biophys Acta, Gen Subj 1474 360 364 10.1016/S0304-4165(00)00029-5 1:CAS:528:DC%2BD3cXisFGlur0%3D (Pubitemid 30209877)
4. I Choi H Kim Y Choi 2000 Gene cloning and characterization of α-glucuronidase of Bacillus stearothermophilus No. 236 Biosci Biotechnol Biochem 64 2530 2537 10.1271/bbb.64.2530 1:CAS:528:DC%2BD3MXmtVOqsA%3D%3D
5. RP de Vries CH Poulsen S Madrid J Visser 1998 aguA, the gene encoding an extracellular α-glucuronidase from Aspergillus tubingensis, is specifically induced on xylose and not on glucuronic acid J Bacteriol 180 243 249 (Pubitemid 28100288)
6. RP de Vries J Visser LH de Graaff 1999 CreA modulates the XlnR-induced expression on xylose of Aspergillus niger genes involved in xylan degradation Res Microbiol 150 281 285 10.1016/S0923-2508(99)80053-9
7. RP de Vries PJI van de Vondervoort L Hendriks M van de Belt J Visser 2002 Regulation of the α-glucuronidase-encoding gene (aguA) from Aspergillus niger Mol Genet Genomics 268 96 102 10.1007/s00438-002-0729-7
8. JJM Dons OMH de Vries JGH Wessels 1979 Characterization of the genome of the basidiomycete Schizophyllum commune Biochim Biophys Acta Nucleic Acids Protein Synth 563 100 112 10.1016/0005-2787(79)90011-X 1:CAS:528: DyaE1MXkslWrsrg%3D
9. MS Dudkin NG Shkantova MA Parfent'eva 1974 Structure of arabinoglucuronoxylan of Poa pratensis Khim Prir Soedin 10 723 724
10. A Ebringerová T Heinze 2000 Xylan and xylan derivatives- biopolymers with valuable properties. 1. Naturally occurring xylans structures, isolation procedures and properties Macromol Rapid Commun 21 542 556 10.1002/1521-3927(20000601)21:9<542::AID-MARC542>3.0.CO;2-7
11. Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797 (Pubitemid 38832724)
12. R Fauré CM Courtin JA Delcour C Dumon CB Faulds GB Fincher S Fort SC Fry S Halila MA Kabel L Pouvreau B Quemener A Rivet L Saulnier HA Schols H Driquez MJ O'Donohue 2009 A brief and informationally rich naming system for oligosaccharide motifs of heteroxylans found in plant cell walls Aust J Chem 62 1 5 10.1071/CH08458
13. N Halgasova E Kutejova J Timko 1994 Purification and some characteristics of the acetylxylan esterase from Schizophyllum commune Biochem J 298 751 755 1:CAS:528:DyaK2cXjtFyisL8%3D (Pubitemid 24085206)
14. D Haltrich W Steiner 1994 Formation of xylanase by Schizophyllum commune: effect of medium components Enzyme Microb Technol 16 229 235 10.1016/0141-0229(94)90047-7 1:CAS:528:DyaK2cXhvVOjsrc%3D (Pubitemid 24102658)
15. MN Heneghan L McLoughlin PG Murray MG Tuohy 2007 Cloning, characterization and expression analysis of α-glucuronidase from the thermophilic fungus Talaromyces emersonii Enzyme Microb Technol 41 677 682 10.1016/j.enzmictec.2007.05.014 1:CAS:528:DC%2BD2sXhtVWmtrfE (Pubitemid 47361314)
16. DH Huson DC Richter C Rausch T Dezulian M Franz R Rupp 2007 Dendroscope: an interactive viewer for large phylogenetic trees BMC Bioinformatics 8 460 10.1186/1471-2105-8-460 (Pubitemid 351168201)
17. K Kolenová M Vršanská P Biely 2005 Purification and characterization of two minor endo-β-1, 4-xylanases of Schizophyllum commune Enzyme Microb Technol 36 903 910 10.1016/j.enzmictec.2005.01.006 (Pubitemid 40591708)
18. K Kolenová M Vršanská P Biely 2006 Mode of action of endo-β-1, 4-xylanases of families 10 and 11 on acidic xylooligosaccharides J Biotechnol 121 338 345 10.1016/j.jbiotec.2005.08.001 (Pubitemid 43113106)
19. K Kolenová O Ryabova M Vrsanska P Biely 2010 Inverting character of family GH115 α-glucuronidases FEBS Lett 584 4063 4068 10.1016/j.febslet.2010.08.031
20. Lugones LG, Scholtmeijer K, Klootwijk R, Wessels JG (1999) Introns are necessary for mRNA accumulation in Schizophyllum commune. Mol Microbiol 32:681-689 (Pubitemid 29241510)
21. CR MacKenzie D Bilous 1988 Ferulic acid esterase activity from Schizophyllum commune Appl Environ Microbiol 54 1170 1173 1:CAS:528: DyaL1cXktlChur0%3D
22. DJ Niederpruem H Hobbs L Henry 1964 Nutritional studies of development in Schizophyllum commune J Bacteriol 88 1721 1729 1:CAS:528:DyaF2MXhtVOktQ%3D%3D
23. KL O'Connell JT Stults 1997 Identification of mouse liver proteins on two-dimensional electrophoresis gels by matrix-assisted laser desorption/ionization mass spectrometry of in situ enzymic digests Electrophoresis 18 349 359 10.1002/elps.1150180309 (Pubitemid 27174419)
24. RA Ohm JF de Jong LG Lugones A Aerts E Kothe JE Stajich RP de Vries E Record A Levasseur SE Baker KA Bartholomew PM Coutinho S Erdmann TJ Fowler AC Gathman V Lombard B Henrissat N Knabe U Kües WW Lilly E Lindquist S Lucas JK Magnuson F Piumi M Raudaskoski A Salamov J Schmutz FWMR Schwarze PA van Kuyk JS Horton IV Grigoriev HAB Wösten 2010 Genome sequence of the model mushroom Schizophyllum commune Nat Biotechnol 28 957 963 10.1038/nbt.1643 1:CAS:528:DC%2BC3cXos1aitb0%3D
25. P Ruile C Winterhalter W Liebl 1997 Isolation and analysis of a gene encoding α-glucuronidase, an enzyme with a novel primary structure involved in the breakdown of xylan Mol Microbiol 23 267 279 10.1046/j.1365-2958. 1997.2011568.x 1:CAS:528:DyaK2sXpsVOrtQ%3D%3D (Pubitemid 27049180)
26. O Ryabova M Vrsanska S Kaneko WH van Zyl P Biely 2009 A novel family of hemicellulolytic α-glucuronidase FEBS Lett 583 1457 1462 10.1016/j.febslet.2009.03.057 1:CAS:528:DC%2BD1MXlsVKgsb0%3D
27. Sambrook JF, Russell DW (2000) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory, New York
28. Schuren FH, Wessels JG (1994) Highly-efficient transformation of the homobasidiomycete Schizophyllum commune to phleomycin resistance. Curr Genet 26:179-183 (Pubitemid 24217726)
29. W Shao SKC Obi J Puls J Wiegel 1995 Purification and characterization of the α-glucuronidase from Thermoanaerobacterium sp. strain JW/SL-YS485, an important enzyme for the utilization of substituted xylans Appl Environ Microbiol 61 1077 1081 1:CAS:528:DyaK2MXktV2rtrY%3D
30. M Siika-aho M Tenkanen J Buchert J Puls L Viikari 1994 An α-glucuronidase from Trichoderma reesei Rut C-30 Enzyme Microb Technol 16 813 819 10.1016/0141-0229(94)90041-8 1:CAS:528:DyaK2cXmsV2is74%3D
31. 13C NMR spectroscopy Carbohydr Res 329 807 815 10.1016/S0008-6215(00)00249-4 1:CAS:528:DC%2BD3cXptVWksLs%3D (Pubitemid 32056152)
32. M Tenkanen M Siika-aho 2000 An α-glucuronidase of Schizophyllum commune acting on polymeric xylan J Biotechnol 78 149 161 10.1016/S0168-1656(99) 00240-0 1:CAS:528:DC%2BD3cXhvVOrtr0%3D (Pubitemid 30139557)
33. M Tenkanen E Luonteri A Teleman 1996 Effect of side groups on the action of β-xylosidase from Trichoderma reesei against substituted xylo-oligosaccharides FEBS Lett 399 303 306 10.1016/S0014-5793(96)01313-0 1:CAS:528:DyaK2sXktlSqtw%3D%3D (Pubitemid 26426870)
34. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680 10.1093/nar/22.22.4673 1:CAS:528:DyaK2MXitlSgu74%3D (Pubitemid 24354800)
35. TE Timell 1967 Recent progress in the chemistry of wood hemicelluloses Wood Sci Technol 1 45 70 10.1007/BF00592255 1:CAS:528:DyaF1cXktFWhtg%3D%3D
36. H Uchida T Nanri Y Kawabata I Kusakabe K Murakami 1992 Purification and characterization of intracellular α-glucuronidase from Aspergillus niger 5-16 Biosci Biotechnol Biochem 56 1608 1615 10.1271/bbb.56.1608 1:CAS:528:DyaK3sXnsFymsA%3D%3D
37. NNME van Peij MMC Gielkens RP de Vries J Visser LH de Graaff 1998 The transcriptional activator XlnR regulates both xylanolytic and endoglucanase gene expression in Aspergillus niger Appl Environ Microbiol 64 3615 3619 (Pubitemid 28462948)
38. MA Verbruggen G Beldman AG Voragen 1998 Enzymic degradation of sorghum glucuronoarabinoxylans leading to tentative structures Carbohydr Res 306 275 282 10.1016/S0008-6215(97)10065-9 1:CAS:528:DyaK1cXksFCitb0%3D (Pubitemid 28304995)
39. S Yoshida I Kusakabe N Matsuo K Shimizu T Yasui K Murakami 1990 Structure of rice-straw arabinoglucuronoxylan and specificity of Streptomyces xylanase toward the xylan Agric Biol Chem 54 449 457 1:CAS:528:DyaK3cXitFGnsLw%3D
40. Y Zhang MA Frohman 1997 Using rapid amplification of cDNA ends (RACE) to obtain full-length cDNAs Methods Mol Biol 69 61 87 1:CAS:528:DyaK28XntlSmsbw%3D